Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00272 * 2 1 4 4 H 1.48501 * 109.47361 * 270.00010 * 3 2 1 5 5 H 1.48492 * 109.47414 * 30.00356 * 3 2 1 6 6 H 1.48504 * 109.47023 * 150.00497 * 3 2 1 7 7 C 1.37878 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00034 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.53383 * 300.09928 * 9 7 2 11 11 C 1.53118 * 109.50290 * 60.19931 * 9 7 2 12 12 C 1.53109 * 109.16093 * 177.59596 * 11 9 7 13 13 C 1.53041 * 109.28110 * 302.34409 * 12 11 9 14 14 N 1.46843 * 109.52141 * 59.17528 * 13 12 11 15 15 C 1.38424 * 111.00015 * 174.16325 * 14 13 12 16 16 N 1.31964 * 120.14457 * 62.10174 * 15 14 13 17 17 C 1.32656 * 122.63893 * 180.02562 * 16 15 14 18 18 C 1.36065 * 121.99382 * 359.97293 * 17 16 15 19 19 C 1.40852 * 118.85895 * 0.02562 * 18 17 16 20 20 C 1.40181 * 122.17222 * 179.97438 * 19 18 17 21 21 C 1.36284 * 119.47419 * 179.97438 * 20 19 18 22 22 C 1.39281 * 120.97433 * 0.03084 * 21 20 19 23 23 C 1.36295 * 121.04502 * 359.97438 * 22 21 20 24 24 C 1.40088 * 119.53711 * 359.97438 * 23 22 21 25 25 C 1.46846 * 111.20046 * 298.26052 * 14 13 12 26 26 H 0.97003 * 119.99494 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52151 * 297.49742 * 11 9 7 28 28 H 1.08998 * 109.52595 * 57.62238 * 11 9 7 29 29 H 1.08999 * 109.50765 * 62.28121 * 12 11 9 30 30 H 1.09005 * 109.50586 * 182.36091 * 12 11 9 31 31 H 1.09007 * 109.45571 * 299.16339 * 13 12 11 32 32 H 1.08998 * 109.46555 * 179.19972 * 13 12 11 33 33 H 1.07995 * 118.99451 * 179.97438 * 17 16 15 34 34 H 1.08006 * 120.56887 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.25858 * 0.27422 * 20 19 18 36 36 H 1.07997 * 119.51170 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.47455 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.23498 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.46216 * 181.75435 * 25 14 13 40 40 H 1.08993 * 109.46505 * 301.72385 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6229 -2.5574 0.8884 11 6 0.3736 -2.5829 -1.2527 12 6 -0.3421 -3.9362 -1.2753 13 6 0.6978 -5.0585 -1.2390 14 7 1.5109 -4.9348 -0.0225 15 6 2.3751 -6.0083 0.1079 16 7 3.3026 -6.2270 -0.8050 17 6 4.1557 -7.2401 -0.7298 18 6 4.1316 -8.1278 0.3012 19 6 3.1704 -7.9634 1.3175 20 6 3.0830 -8.8368 2.4105 21 6 2.1314 -8.6257 3.3631 22 6 1.2448 -7.5560 3.2659 23 6 1.3024 -6.6884 2.2164 24 6 2.2686 -6.8741 1.2191 25 6 2.2447 -3.6630 -0.0013 26 1 -0.4849 0.8401 0.0004 27 1 -0.3644 -1.7809 -1.2347 28 1 0.9969 -2.4844 -2.1414 29 1 -0.9952 -4.0172 -0.4064 30 1 -0.9358 -4.0188 -2.1857 31 1 1.3418 -4.9852 -2.1154 32 1 0.1910 -6.0235 -1.2406 33 1 4.8914 -7.3640 -1.5105 34 1 4.8376 -8.9443 0.3396 35 1 3.7674 -9.6674 2.4995 36 1 2.0633 -9.2984 4.2052 37 1 0.4998 -7.4117 4.0345 38 1 0.6081 -5.8635 2.1539 39 1 2.8614 -3.6144 0.8963 40 1 2.8815 -3.5963 -0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528053510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = 40.956867 kcal Electronic energy + Delta-G solvation = -21828.638677 eV Core-core repulsion = 18800.056410 eV Total energy + Delta-G solvation = -3028.582267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01702 -39.80572 -38.06590 -35.79045 -34.07505 -32.44833 -31.94468 -31.76940 -29.89961 -26.98419 -25.78360 -24.48914 -24.14351 -23.26637 -22.22883 -20.48159 -19.04500 -18.47618 -18.20235 -17.49419 -16.73751 -16.32873 -16.02626 -15.76256 -15.24327 -14.95977 -14.89002 -14.58160 -14.44691 -14.29535 -14.06673 -13.69125 -13.41273 -12.99178 -12.85609 -12.70373 -12.63376 -12.58251 -11.99133 -11.91890 -11.79589 -11.47673 -11.11812 -10.97544 -10.74560 -10.54407 -10.38792 -10.01287 -9.57367 -8.88678 -8.09448 -6.23319 -0.59214 -0.00961 0.98084 1.40913 1.41369 1.51776 2.13480 2.41081 2.68647 3.10996 3.17577 3.56398 3.75137 3.93439 3.95242 4.08634 4.17007 4.21895 4.32563 4.36984 4.50051 4.53062 4.55584 4.61768 4.82046 4.85800 4.88163 4.92493 5.02605 5.08980 5.14525 5.21836 5.32143 5.45145 5.51791 5.57579 5.60983 5.63156 5.82033 5.99858 6.01204 6.12425 6.38812 6.40822 6.85838 7.02343 7.44041 8.95397 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.004461 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.550071 B = 6275.789049 C = 6379.741881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.045 0.955 9 C 0.058 3.942 10 H 0.005 0.995 11 C -0.103 4.103 12 C -0.106 4.106 13 C 0.078 3.922 14 N -0.491 5.491 15 C 0.321 3.679 16 N -0.550 5.550 17 C 0.067 3.933 18 C -0.153 4.153 19 C -0.040 4.040 20 C -0.118 4.118 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.088 4.088 24 C -0.107 4.107 25 C 0.098 3.902 26 H 0.262 0.738 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.125 0.875 39 H 0.043 0.957 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -19.993 4.194 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.063 0.937 9 C 0.039 3.961 10 H 0.024 0.976 11 C -0.141 4.141 12 C -0.144 4.144 13 C -0.049 4.049 14 N -0.214 5.214 15 C 0.080 3.920 16 N -0.262 5.262 17 C -0.078 4.078 18 C -0.172 4.172 19 C -0.046 4.046 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.028 4.028 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.188 0.812 34 H 0.193 0.807 35 H 0.182 0.818 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.062 0.938 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.834 -19.377 3.818 20.118 hybrid contribution 0.800 0.994 -0.255 1.301 sum 4.634 -18.383 3.563 19.290 Atomic orbital electron populations 1.70012 1.06979 1.27203 1.50822 1.25649 0.95695 1.02068 0.94548 0.85629 0.78697 0.79510 0.78254 1.20117 1.20455 1.19665 1.21415 0.92744 0.92139 1.51429 0.93652 1.18575 0.92692 0.90550 0.94291 0.97646 1.21465 0.99136 0.96322 0.97186 1.21589 0.97015 0.94079 1.01732 1.21980 0.94663 0.99307 0.88936 1.59966 1.21637 1.00544 1.39241 1.20336 0.89950 0.91614 0.90097 1.67608 1.05894 1.22329 1.30411 1.22433 0.96483 0.90022 0.98865 1.22215 0.99441 1.01642 0.93894 1.18545 0.94779 0.94421 0.96817 1.21296 1.00137 0.99388 0.92716 1.21414 0.93526 0.96927 0.99223 1.21320 1.00210 0.94800 0.97970 1.21129 0.96913 0.99403 0.93326 1.18822 0.99230 0.96592 0.96417 1.21918 0.95375 0.87392 0.98141 0.92868 0.91578 0.96025 0.92110 0.90487 0.95085 0.90433 0.81150 0.80658 0.81778 0.82015 0.83430 0.85732 0.93841 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.08 11.36 21.45 0.24 -52.83 16 2 C 0.02 1.11 5.30 84.65 0.45 1.56 16 3 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.00 8.56 25.60 0.22 -30.78 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.06 3.06 2.26 -11.49 -0.03 3.04 16 10 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 11 C -0.10 -5.08 5.03 30.67 0.15 -4.93 16 12 C -0.11 -4.22 6.09 30.64 0.19 -4.04 16 13 C 0.08 2.96 5.26 86.33 0.45 3.41 16 14 N -0.49 -19.99 3.82 -700.73 -2.68 -22.67 16 15 C 0.32 11.99 5.33 133.92 0.71 12.71 16 16 N -0.55 -19.94 9.71 -193.32 -1.88 -21.82 16 17 C 0.07 1.82 11.06 84.06 0.93 2.75 16 18 C -0.15 -3.37 9.87 22.40 0.22 -3.15 16 19 C -0.04 -1.01 5.74 -21.30 -0.12 -1.14 16 20 C -0.12 -2.10 9.81 22.29 0.22 -1.88 16 21 C -0.09 -1.53 9.95 22.07 0.22 -1.31 16 22 C -0.13 -2.67 9.95 22.07 0.22 -2.45 16 23 C -0.09 -2.58 9.56 22.27 0.21 -2.36 16 24 C -0.11 -3.43 5.75 -21.21 -0.12 -3.55 16 25 C 0.10 4.65 4.48 86.33 0.39 5.04 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.07 3.61 6.16 -2.39 -0.01 3.60 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.03 1.24 8.04 -2.38 -0.02 1.22 16 32 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 33 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.12 4.04 7.61 -2.91 -0.02 4.02 16 39 H 0.04 2.11 8.10 -2.38 -0.02 2.10 16 40 H 0.02 0.99 8.03 -2.39 -0.02 0.97 16 Total: -1.00 -68.01 324.74 3.05 -64.96 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.02 Total: 12.84 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.31 Total: -27.09 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.31 Total: -97.32 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.01 3.05 -64.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528053510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.918 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds