Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29945 * 126.28346 * 2 1 4 4 O 1.21296 * 110.25235 * 180.02562 * 3 2 1 5 5 C 1.33650 * 109.80759 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.54780 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46701 * 165.02714 * 6 5 4 8 8 C 1.53000 * 109.47333 * 285.02672 * 6 5 4 9 9 N 1.46498 * 109.47491 * 45.02889 * 6 5 4 10 10 C 1.46505 * 119.99825 * 299.99811 * 9 6 5 11 11 C 1.34774 * 120.00211 * 119.99557 * 9 6 5 12 12 O 1.21586 * 120.00048 * 0.02562 * 11 9 6 13 13 N 1.34773 * 119.99940 * 180.02562 * 11 9 6 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 C 1.50696 * 109.46969 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00408 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99883 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47155 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47086 * 120.00020 * 20 18 16 23 23 H 1.48500 * 109.46879 * 240.00077 * 20 18 16 24 24 N 1.31127 * 106.89847 * 0.23050 * 5 4 3 25 25 H 1.09005 * 109.47162 * 89.97804 * 1 2 3 26 26 H 1.09002 * 109.47166 * 209.97523 * 1 2 3 27 27 H 1.09005 * 109.47261 * 329.97473 * 1 2 3 28 28 H 1.09001 * 109.47192 * 60.00344 * 8 6 5 29 29 H 1.08998 * 109.47559 * 180.02562 * 8 6 5 30 30 H 1.09003 * 109.47049 * 300.00136 * 8 6 5 31 31 H 1.09000 * 109.47191 * 269.99691 * 10 9 6 32 32 H 1.09006 * 109.47198 * 29.99856 * 10 9 6 33 33 H 1.09004 * 109.46976 * 149.99501 * 10 9 6 34 34 H 0.97005 * 120.00161 * 359.72198 * 13 11 9 35 35 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 36 36 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 37 37 H 1.09000 * 109.46986 * 299.99958 * 15 14 13 38 38 H 1.09002 * 109.46857 * 60.00093 * 15 14 13 39 39 H 0.96999 * 119.99905 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5298 -0.6211 -0.0003 6 6 4.7970 -1.4368 -0.0014 7 1 4.5653 -2.4682 0.2646 8 6 5.4270 -1.3987 -1.3951 9 7 5.7370 -0.8802 0.9748 10 6 6.2052 0.5010 0.8357 11 6 6.1709 -1.6388 2.0008 12 8 5.7827 -2.7852 2.1160 13 7 7.0353 -1.1265 2.8991 14 6 7.5075 -1.9512 4.0141 15 6 8.4770 -1.1387 4.8746 16 6 8.9622 -1.9868 6.0219 17 1 8.6142 -3.0038 6.1265 18 6 9.8504 -1.4644 6.9380 19 7 10.2738 -0.2258 6.8109 20 14 10.4524 -2.5160 8.3597 21 1 9.8315 -3.8624 8.2771 22 1 11.9298 -2.6475 8.2872 23 1 10.0750 -1.8742 9.6446 24 7 2.3030 -1.0840 -0.0047 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 5.6587 -0.3673 -1.6610 29 1 6.3433 -1.9891 -1.3960 30 1 4.7277 -1.8129 -2.1214 31 1 7.1096 0.5186 0.2275 32 1 5.4320 1.1001 0.3545 33 1 6.4222 0.9121 1.8216 34 1 7.3482 -0.2131 2.8049 35 1 6.6572 -2.2633 4.6206 36 1 8.0181 -2.8316 3.6240 37 1 9.3272 -0.8266 4.2681 38 1 7.9662 -0.2583 5.2647 39 1 10.8984 0.1418 7.4556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579975437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = 38.422417 kcal Electronic energy + Delta-G solvation = -21989.341018 eV Core-core repulsion = 18549.799586 eV Total energy + Delta-G solvation = -3439.541432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.80276 -40.14155 -36.76130 -36.27605 -34.92379 -33.48831 -32.71413 -31.12577 -29.39933 -29.26442 -27.07085 -25.27180 -24.48452 -23.44624 -21.76440 -20.89925 -19.71174 -18.35619 -18.09561 -17.55466 -16.60846 -16.25168 -15.82449 -15.10106 -14.55033 -14.35518 -14.10964 -13.98742 -13.84127 -13.56213 -13.25438 -12.91940 -12.80759 -12.67871 -12.53585 -12.34794 -12.25132 -11.80089 -11.54483 -11.20176 -11.17606 -11.06360 -10.62899 -10.36832 -10.14980 -10.01369 -9.59217 -9.27049 -9.03666 -8.53085 -8.33511 -6.10521 -4.13096 0.88172 1.95972 2.49998 2.58562 3.28125 3.34212 3.35917 3.41130 3.49875 3.82211 4.16657 4.42944 4.57007 4.62856 4.91816 4.96269 5.06011 5.12808 5.23195 5.26901 5.29129 5.36015 5.49749 5.56361 5.64362 5.76074 5.82997 6.12505 6.31611 6.35806 6.73217 6.89406 6.93885 7.52638 7.60509 7.88391 7.94274 8.14830 8.28941 8.78622 8.93440 9.51861 11.01195 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.003047 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.891784 B = 9187.279518 C = 9349.370768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.078 5.922 5 C 0.180 3.820 6 C 0.251 3.749 7 H 0.147 0.853 8 C -0.159 4.159 9 N -0.634 5.634 10 C 0.070 3.930 11 C 0.704 3.296 12 O -0.589 6.589 13 N -0.732 5.732 14 C 0.138 3.862 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.474 5.474 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.401 3.236 -17.863 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 N -0.097 5.097 4 O 0.022 5.978 5 C -0.042 4.042 6 C 0.143 3.857 7 H 0.165 0.835 8 C -0.218 4.218 9 N -0.373 5.373 10 C -0.073 4.073 11 C 0.405 3.595 12 O -0.467 6.467 13 N -0.386 5.386 14 C 0.015 3.985 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.210 1.210 24 N -0.208 5.208 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.178 3.020 -17.630 22.824 hybrid contribution 0.663 0.142 0.829 1.071 sum -13.516 3.162 -16.801 21.793 Atomic orbital electron populations 1.20143 0.82863 1.04797 1.04230 1.25942 1.00650 0.83447 1.00527 1.74612 0.89586 1.24073 1.21470 1.85300 1.22212 1.24782 1.65550 1.29479 0.97346 0.82149 0.95245 1.19359 0.79220 0.96487 0.90647 0.83541 1.22204 1.02351 1.03812 0.93456 1.47087 1.48056 1.14225 1.27981 1.21925 1.00552 0.81685 1.03165 1.15942 0.79980 0.84384 0.79202 1.90904 1.62334 1.16892 1.76524 1.45695 1.47227 1.17514 1.28159 1.21668 0.97839 0.93899 0.85077 1.19331 0.93417 0.95649 0.94081 1.21079 1.26303 0.99143 1.09361 0.92128 1.24997 0.96149 0.95079 0.98090 1.69961 1.32728 1.14058 1.36563 0.86456 0.78525 0.80595 0.81995 1.19544 1.20933 1.20954 1.71899 0.99494 1.29446 1.19987 0.89323 0.88929 0.89484 0.91321 0.89578 0.90541 0.91659 0.90426 0.90570 0.76933 0.92640 0.92479 0.95893 0.95986 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.17 2.00 8.22 -156.37 -1.28 0.72 16 3 N -0.39 -5.01 12.16 30.90 0.38 -4.64 16 4 O 0.08 0.96 8.85 18.08 0.16 1.12 16 5 C 0.18 2.22 7.19 -13.06 -0.09 2.12 16 6 C 0.25 2.85 3.19 -69.08 -0.22 2.63 16 7 H 0.15 1.92 6.90 -51.93 -0.36 1.56 16 8 C -0.16 -1.25 9.18 37.16 0.34 -0.91 16 9 N -0.63 -8.07 2.75 -181.00 -0.50 -8.57 16 10 C 0.07 0.67 9.21 59.85 0.55 1.22 16 11 C 0.70 12.01 8.28 -86.92 -0.72 11.29 16 12 O -0.59 -12.13 15.67 5.29 0.08 -12.05 16 13 N -0.73 -12.71 5.42 -65.22 -0.35 -13.06 16 14 C 0.14 2.90 5.61 -4.04 -0.02 2.88 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 N -0.47 -6.28 11.55 -9.87 -0.11 -6.39 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.46 7.67 -51.93 -0.40 0.07 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.68 5.48 -51.93 -0.28 0.39 16 33 H 0.08 0.74 6.37 -51.93 -0.33 0.41 16 34 H 0.40 5.94 6.21 -40.82 -0.25 5.69 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -33.42 331.69 -6.65 -40.07 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.39 Total: 0.51 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -1.62 Total: 6.95 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.15 Total: -57.83 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.24 Total: -10.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.42 -6.65 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579975437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.490 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds