Wall clock time and date at job start Tue Mar 31 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38034 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41058 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99806 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99868 * 0.02686 * 7 6 5 10 10 C 1.46499 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46895 * 299.99821 * 11 10 9 13 13 C 1.52999 * 109.46967 * 59.99768 * 11 10 9 14 14 C 1.50700 * 109.46989 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99936 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99847 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00031 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00093 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46827 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46984 * 119.99398 * 18 16 14 21 21 H 1.48496 * 109.47219 * 239.99713 * 18 16 14 22 22 C 1.35909 * 107.17858 * 359.97438 * 6 5 4 23 23 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 24 24 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 29 29 H 0.96998 * 119.99677 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.46933 * 299.99386 * 10 9 7 31 31 H 1.08994 * 109.47243 * 59.99742 * 10 9 7 32 32 H 1.08998 * 109.46872 * 60.00314 * 12 11 10 33 33 H 1.09001 * 109.46390 * 179.97438 * 12 11 10 34 34 H 1.08995 * 109.47066 * 299.99618 * 12 11 10 35 35 H 1.08998 * 109.47113 * 60.00106 * 13 11 10 36 36 H 1.09004 * 109.46831 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.47604 * 299.99679 * 13 11 10 38 38 H 0.97002 * 120.00094 * 180.02562 * 17 16 14 39 39 H 1.07998 * 126.46073 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5324 3.1429 -0.0012 9 7 6.0357 4.7846 -0.0001 10 6 7.0886 5.8032 -0.0008 11 6 6.4521 7.1945 -0.0007 12 6 5.5834 7.3580 -1.2495 13 6 5.5848 7.3584 1.2490 14 6 7.5352 8.2424 -0.0009 15 1 8.5737 7.9456 -0.0007 16 6 7.2004 9.5799 -0.0002 17 7 5.9359 9.9412 0.0001 18 14 8.5429 10.8788 0.0003 19 1 9.8721 10.2167 -0.0007 20 1 8.4119 11.7265 -1.2119 21 1 8.4120 11.7255 1.2131 22 6 5.4846 1.1054 -0.0003 23 8 4.2630 0.5428 0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1031 5.0510 0.0001 30 1 7.7078 5.6864 0.8886 31 1 7.7062 5.6867 -0.8913 32 1 4.8000 6.6001 -1.2488 33 1 5.1296 8.3491 -1.2490 34 1 6.2013 7.2413 -2.1397 35 1 6.2037 7.2419 2.1387 36 1 5.1310 8.3495 1.2489 37 1 4.8014 6.6005 1.2496 38 1 5.7003 10.8822 0.0001 39 1 6.4308 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:09 Heat of formation + Delta-G solvation = -53.852808 kcal Electronic energy + Delta-G solvation = -21958.164605 eV Core-core repulsion = 18482.329067 eV Total energy + Delta-G solvation = -3475.835537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.52094 -39.36443 -38.94826 -36.32623 -34.99550 -33.20777 -32.29996 -30.80458 -29.58869 -25.98562 -25.64039 -25.17222 -24.12185 -23.33524 -22.27722 -20.43802 -19.13995 -18.60512 -17.72820 -17.27364 -16.48665 -15.87178 -15.74645 -15.28160 -14.98680 -14.65058 -14.59194 -13.75228 -13.29224 -13.20825 -13.17426 -12.85532 -12.80965 -12.18280 -12.12402 -11.68813 -11.34045 -11.14787 -11.00739 -10.82095 -10.82018 -10.62514 -10.31986 -10.18153 -9.86222 -9.56721 -9.26302 -8.81576 -8.72158 -8.41392 -8.27052 -5.97011 -4.07294 1.09294 1.73096 2.05313 2.57373 3.30569 3.38914 3.43003 3.57340 3.59683 4.37415 4.37747 4.42688 4.54583 4.69589 4.82729 5.05078 5.27028 5.27287 5.29538 5.42172 5.56861 5.76662 6.26589 6.35773 6.49492 6.57952 6.79549 6.94282 6.98676 7.06309 7.09297 7.39845 7.45391 7.63211 7.74778 8.07578 8.08088 8.20596 8.42956 8.62409 8.93510 9.58270 11.04390 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030393 B = 0.003358 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.042508 B = 8335.473418 C = 9054.852807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.245 6.245 4 C 0.379 3.621 5 N -0.451 5.451 6 C -0.037 4.037 7 C 0.590 3.410 8 O -0.547 6.547 9 N -0.693 5.693 10 C 0.129 3.871 11 C 0.056 3.944 12 C -0.132 4.132 13 C -0.132 4.132 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.008 4.008 23 O -0.229 6.229 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.409 0.591 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.009 0.991 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.086 0.914 37 H 0.009 0.991 38 H 0.259 0.741 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -19.827 -0.004 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.153 6.153 4 C 0.133 3.867 5 N -0.197 5.197 6 C -0.156 4.156 7 C 0.373 3.627 8 O -0.427 6.427 9 N -0.342 5.342 10 C 0.007 3.993 11 C 0.055 3.945 12 C -0.190 4.190 13 C -0.190 4.190 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.080 4.080 23 O -0.120 6.120 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.246 0.754 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.329 -19.192 0.000 21.339 hybrid contribution 0.509 -0.030 0.003 0.510 sum -8.820 -19.222 0.003 21.149 Atomic orbital electron populations 1.21809 0.91282 1.03543 1.04303 1.23036 0.96827 0.79535 1.02951 1.86394 1.09030 1.30601 1.89302 1.23311 0.83418 0.81650 0.98367 1.71177 1.04106 1.21378 1.23041 1.21952 0.90226 0.94267 1.09144 1.16724 0.85942 0.82223 0.77778 1.90798 1.17893 1.81615 1.52361 1.46209 1.12417 1.04830 1.70771 1.21844 0.88896 0.87762 1.00781 1.18369 0.94298 0.88817 0.93016 1.21838 0.97697 1.02035 0.97433 1.21840 0.97697 1.02038 0.97432 1.21018 0.92285 0.90299 1.50738 0.92339 1.24886 0.95387 0.98431 0.94859 1.69827 1.15656 1.16245 1.50618 0.86517 0.82262 0.81617 0.77482 1.19774 1.21104 1.21099 1.24928 0.85673 0.92957 1.04442 1.84364 1.16295 1.39207 1.72150 0.90921 0.90913 0.89535 0.90871 0.90874 0.75424 0.92309 0.92314 0.97220 0.89564 0.95448 0.95452 0.89560 0.97227 0.93080 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.05 0.35 6.38 37.16 0.24 0.59 16 3 O -0.24 -2.78 10.19 -40.97 -0.42 -3.20 16 4 C 0.38 5.07 8.98 52.22 0.47 5.54 16 5 N -0.45 -7.29 11.10 -11.71 -0.13 -7.42 16 6 C -0.04 -0.58 6.99 -82.98 -0.58 -1.16 16 7 C 0.59 11.09 7.81 -12.54 -0.10 10.99 16 8 O -0.55 -11.34 16.89 5.26 0.09 -11.25 16 9 N -0.69 -13.65 4.95 -61.40 -0.30 -13.96 16 10 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 11 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 12 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 13 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 14 C -0.50 -13.43 8.01 -34.44 -0.28 -13.71 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.88 -24.06 9.35 55.43 0.52 -23.54 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.01 -0.10 11.93 29.90 0.36 0.26 16 23 O -0.23 -2.66 10.20 -17.77 -0.18 -2.84 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.41 7.92 5.89 -40.82 -0.24 7.68 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 33 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 37 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.24 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -30.35 329.38 -4.93 -35.28 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.35 Total: 3.77 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 0.90 Total: 2.24 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.08 Total: -44.91 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.51 Total: -17.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.35 -4.93 -35.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.569 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds