Wall clock time and date at job start Tue Mar 31 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38034 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41058 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99806 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99868 * 0.02686 * 7 6 5 10 10 C 1.46499 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46895 * 299.99821 * 11 10 9 13 13 C 1.52999 * 109.46967 * 59.99768 * 11 10 9 14 14 C 1.50700 * 109.46989 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99936 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99847 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00031 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00093 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46827 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46984 * 119.99398 * 18 16 14 21 21 H 1.48496 * 109.47219 * 239.99713 * 18 16 14 22 22 C 1.35909 * 107.17858 * 359.97438 * 6 5 4 23 23 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 24 24 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 29 29 H 0.96998 * 119.99677 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.46933 * 299.99386 * 10 9 7 31 31 H 1.08994 * 109.47243 * 59.99742 * 10 9 7 32 32 H 1.08998 * 109.46872 * 60.00314 * 12 11 10 33 33 H 1.09001 * 109.46390 * 179.97438 * 12 11 10 34 34 H 1.08995 * 109.47066 * 299.99618 * 12 11 10 35 35 H 1.08998 * 109.47113 * 60.00106 * 13 11 10 36 36 H 1.09004 * 109.46831 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.47604 * 299.99679 * 13 11 10 38 38 H 0.97002 * 120.00094 * 180.02562 * 17 16 14 39 39 H 1.07998 * 126.46073 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5324 3.1429 -0.0012 9 7 6.0357 4.7846 -0.0001 10 6 7.0886 5.8032 -0.0008 11 6 6.4521 7.1945 -0.0007 12 6 5.5834 7.3580 -1.2495 13 6 5.5848 7.3584 1.2490 14 6 7.5352 8.2424 -0.0009 15 1 8.5737 7.9456 -0.0007 16 6 7.2004 9.5799 -0.0002 17 7 5.9359 9.9412 0.0001 18 14 8.5429 10.8788 0.0003 19 1 9.8721 10.2167 -0.0007 20 1 8.4119 11.7265 -1.2119 21 1 8.4120 11.7255 1.2131 22 6 5.4846 1.1054 -0.0003 23 8 4.2630 0.5428 0.0049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1031 5.0510 0.0001 30 1 7.7078 5.6864 0.8886 31 1 7.7062 5.6867 -0.8913 32 1 4.8000 6.6001 -1.2488 33 1 5.1296 8.3491 -1.2490 34 1 6.2013 7.2413 -2.1397 35 1 6.2037 7.2419 2.1387 36 1 5.1310 8.3495 1.2489 37 1 4.8014 6.6005 1.2496 38 1 5.7003 10.8822 0.0001 39 1 6.4308 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:09 Heat of formation + Delta-G solvation = -76.771978 kcal Electronic energy + Delta-G solvation = -21959.158454 eV Core-core repulsion = 18482.329067 eV Total energy + Delta-G solvation = -3476.829387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.54675 -40.71392 -39.92812 -38.13729 -36.09216 -34.97079 -32.93019 -32.63216 -30.62455 -27.66993 -27.57864 -27.09661 -24.99389 -24.41575 -23.26306 -21.67613 -20.64109 -20.11432 -18.64984 -18.57033 -17.74338 -17.39893 -16.73368 -16.63949 -16.48906 -16.13814 -16.01792 -15.06815 -14.74641 -14.56112 -14.47276 -14.00093 -13.91760 -13.55675 -13.22265 -13.10608 -12.71868 -12.66201 -12.55623 -12.52485 -12.26271 -12.12733 -11.89678 -11.78120 -11.49257 -11.45960 -11.12648 -10.69512 -10.39943 -10.07049 -9.72740 -8.00502 -6.17008 0.02924 0.82832 0.91813 1.43633 1.47167 1.57045 1.67832 2.19799 2.21012 2.49355 3.23049 3.37720 3.73540 3.94206 3.97177 4.08476 4.27466 4.36910 4.43181 4.50782 4.64959 4.71448 4.84880 4.88029 4.97235 5.05541 5.11251 5.18618 5.19762 5.31956 5.52937 5.64879 5.65758 5.68396 6.11849 6.20618 6.34675 6.42858 6.63341 6.87426 7.11693 7.50853 8.99102 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030393 B = 0.003358 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.042508 B = 8335.473418 C = 9054.852807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.257 6.257 4 C 0.386 3.614 5 N -0.488 5.488 6 C -0.076 4.076 7 C 0.594 3.406 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.145 3.855 11 C 0.051 3.949 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.525 4.525 15 H 0.050 0.950 16 C 0.025 3.975 17 N -0.902 5.902 18 Si 0.950 3.050 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.033 3.967 23 O -0.213 6.213 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.410 0.590 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -21.824 -0.003 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.166 6.166 4 C 0.139 3.861 5 N -0.235 5.235 6 C -0.194 4.194 7 C 0.380 3.620 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.022 3.978 11 C 0.050 3.950 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.564 4.564 15 H 0.068 0.932 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.776 3.224 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.039 4.039 23 O -0.103 6.103 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.248 0.752 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.821 -21.208 0.001 23.372 hybrid contribution 0.568 0.461 0.003 0.732 sum -9.253 -20.747 0.003 22.717 Atomic orbital electron populations 1.21866 0.89832 1.05108 1.03807 1.23465 0.97931 0.77706 1.04240 1.86435 1.07765 1.33435 1.88958 1.23277 0.84227 0.81357 0.97215 1.71039 1.04480 1.23159 1.24778 1.21516 0.89751 0.94784 1.13355 1.17000 0.86406 0.82172 0.76452 1.90773 1.19109 1.81949 1.53369 1.46068 1.11761 1.05069 1.71641 1.21443 0.89079 0.87472 0.99842 1.18365 0.93948 0.89440 0.93210 1.21677 0.97887 1.01260 0.97077 1.21679 0.97886 1.01262 0.97077 1.21288 0.92587 0.91400 1.51125 0.93159 1.25515 0.97190 1.00056 0.94657 1.69940 1.16830 1.16533 1.50766 0.85635 0.79988 0.79325 0.77424 1.19684 1.20814 1.20804 1.25570 0.86681 0.91760 0.99932 1.84422 1.15900 1.38397 1.71625 0.91421 0.91410 0.86865 0.89566 0.89575 0.75246 0.93267 0.93272 0.95339 0.91787 0.95915 0.95922 0.91783 0.95347 0.93057 0.71358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 71.98 0.74 -0.36 16 2 C 0.04 0.45 6.38 71.98 0.46 0.91 16 3 O -0.26 -5.42 10.19 -64.17 -0.65 -6.07 16 4 C 0.39 9.64 8.98 130.43 1.17 10.81 16 5 N -0.49 -15.28 11.10 -419.39 -4.65 -19.93 16 6 C -0.08 -2.32 6.99 40.31 0.28 -2.04 16 7 C 0.59 22.01 7.81 86.65 0.68 22.69 16 8 O -0.57 -23.32 16.89 -4.10 -0.07 -23.39 16 9 N -0.70 -27.37 4.95 -466.41 -2.31 -29.68 16 10 C 0.14 6.42 4.50 86.38 0.39 6.81 16 11 C 0.05 2.47 0.50 -52.93 -0.03 2.45 16 12 C -0.12 -5.76 8.08 71.98 0.58 -5.18 16 13 C -0.12 -5.77 8.08 71.98 0.58 -5.19 16 14 C -0.53 -28.27 8.01 25.60 0.21 -28.07 16 15 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 16 C 0.03 1.36 5.15 84.65 0.44 1.79 16 17 N -0.90 -49.45 9.35 21.45 0.20 -49.25 16 18 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.03 0.72 11.93 67.28 0.80 1.52 16 23 O -0.21 -4.32 10.20 18.83 0.19 -4.12 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.74 8.14 -2.38 -0.02 0.73 16 29 H 0.41 15.82 5.89 -92.71 -0.55 15.27 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 33 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 34 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 3.34 6.07 -2.38 -0.01 3.33 16 37 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 38 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 39 H 0.27 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -65.23 329.38 1.55 -63.68 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.52 Total: 17.44 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.30 Total: 6.14 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -6.76 Total: -98.86 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.53 Total: -33.59 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.23 1.55 -63.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.093 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds