Wall clock time and date at job start Tue Mar 31 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00222 * 2 1 4 4 H 1.48489 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47013 * 300.00732 * 3 2 1 6 6 H 1.48507 * 109.46695 * 59.99876 * 3 2 1 7 7 C 1.37880 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99701 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99969 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50207 * 59.92342 * 9 7 2 11 11 C 1.53112 * 109.50586 * 299.80492 * 9 7 2 12 12 C 1.53117 * 109.16309 * 182.40341 * 11 9 7 13 13 C 1.53036 * 109.27541 * 57.65673 * 12 11 9 14 14 N 1.46854 * 109.52332 * 300.81717 * 13 12 11 15 15 C 1.38645 * 111.00050 * 185.84120 * 14 13 12 16 16 C 1.38620 * 121.05483 * 348.85926 * 15 14 13 17 17 C 1.38789 * 119.69187 * 180.02562 * 16 15 14 18 18 N 1.31287 * 121.86465 * 359.97438 * 17 16 15 19 19 C 1.33781 * 121.66986 * 0.02562 * 18 17 16 20 20 C 1.40568 * 120.98364 * 180.02562 * 19 18 17 21 21 C 1.36133 * 119.75127 * 179.13112 * 20 19 18 22 22 C 1.39278 * 121.03132 * 0.84892 * 21 20 19 23 23 C 1.36241 * 120.82074 * 359.45357 * 22 21 20 24 24 C 1.40172 * 119.63337 * 359.97438 * 23 22 21 25 25 C 1.46841 * 111.19337 * 61.74562 * 14 13 12 26 26 H 0.97007 * 120.00228 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.52218 * 302.31496 * 11 9 7 28 28 H 1.09001 * 109.52582 * 62.49698 * 11 9 7 29 29 H 1.08996 * 109.50605 * 177.59247 * 12 11 9 30 30 H 1.09000 * 109.50614 * 297.71363 * 12 11 9 31 31 H 1.09002 * 109.46187 * 180.80860 * 13 12 11 32 32 H 1.09002 * 109.46552 * 60.83587 * 13 12 11 33 33 H 1.08002 * 120.15808 * 359.97369 * 16 15 14 34 34 H 1.08005 * 119.07021 * 180.02562 * 17 16 15 35 35 H 1.07999 * 120.12210 * 359.97438 * 20 19 18 36 36 H 1.08005 * 119.48168 * 180.25662 * 21 20 19 37 37 H 1.08000 * 119.58790 * 179.43559 * 22 21 20 38 38 H 1.08002 * 120.18292 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.46930 * 58.27448 * 25 14 13 40 40 H 1.09000 * 109.46264 * 178.25449 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6227 -2.5566 -0.8895 11 6 0.3746 -2.5835 1.2521 12 6 -0.3411 -3.9369 1.2747 13 6 0.6989 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0200 15 6 2.3767 -6.0099 -0.1116 16 6 2.5719 -6.9025 0.9308 17 6 3.4455 -7.9687 0.7684 18 7 4.1007 -8.1633 -0.3525 19 6 3.9611 -7.3422 -1.3994 20 6 4.6694 -7.5646 -2.5930 21 6 4.4948 -6.7232 -3.6489 22 6 3.6359 -5.6303 -3.5617 23 6 2.9380 -5.3804 -2.4186 24 6 3.0851 -6.2336 -1.3162 25 6 2.2448 -3.6630 -0.0012 26 1 -0.4851 0.8401 -0.0004 27 1 0.9987 -2.4865 2.1405 28 1 -0.3634 -1.7815 1.2351 29 1 -0.9334 -4.0203 2.1858 30 1 -0.9948 -4.0175 0.4062 31 1 0.1922 -6.0241 1.2386 32 1 1.3437 -4.9861 2.1130 33 1 2.0474 -6.7685 1.8654 34 1 3.5897 -8.6583 1.5870 35 1 5.3392 -8.4076 -2.6767 36 1 5.0382 -6.9006 -4.5653 37 1 3.5219 -4.9726 -4.4107 38 1 2.2750 -4.5297 -2.3622 39 1 2.8823 -3.5965 0.8805 40 1 2.8607 -3.6138 -0.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596331544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:53 Heat of formation + Delta-G solvation = 54.986695 kcal Electronic energy + Delta-G solvation = -21974.141507 eV Core-core repulsion = 18946.167619 eV Total energy + Delta-G solvation = -3027.973888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93416 -38.56510 -36.77123 -34.52714 -32.59298 -30.79702 -30.76005 -29.95134 -28.92241 -25.23916 -24.60783 -23.42513 -22.81745 -21.53722 -20.90693 -18.98252 -17.82368 -17.11802 -16.98081 -16.13869 -14.96220 -14.83486 -14.57104 -14.35363 -14.02253 -13.91313 -13.84823 -13.48945 -13.01529 -12.67694 -12.58145 -12.50784 -11.84240 -11.57888 -11.38362 -11.25165 -11.04188 -10.88340 -10.80576 -10.41057 -10.26459 -9.98394 -9.66159 -9.42229 -9.17002 -8.87557 -8.64805 -8.58332 -8.38342 -7.53334 -6.09368 -4.16344 0.62645 1.02007 2.18566 3.11873 3.23620 3.32399 3.35920 3.94847 4.32578 4.37052 4.47732 4.89352 4.94546 5.04062 5.18743 5.21413 5.34696 5.39808 5.48640 5.52293 5.66208 5.75558 5.84859 5.96893 6.02800 6.16059 6.18992 6.23276 6.25714 6.44327 6.51356 6.52371 6.59752 6.68215 6.76326 6.98682 7.03126 7.22324 7.29542 7.56886 7.63821 7.87631 8.00476 8.15673 8.30650 8.86985 9.49185 10.96754 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.005208 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.591940 B = 5374.723704 C = 6326.079020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.054 3.946 10 H 0.037 0.963 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.057 3.943 14 N -0.487 5.487 15 C 0.195 3.805 16 C -0.260 4.260 17 C 0.156 3.844 18 N -0.511 5.511 19 C 0.147 3.853 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.069 4.069 24 C -0.115 4.115 25 C 0.067 3.933 26 H 0.261 0.739 27 H 0.034 0.966 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.035 0.965 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -12.389 -1.260 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.035 3.965 10 H 0.055 0.945 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.070 4.070 14 N -0.200 5.200 15 C 0.085 3.915 16 C -0.284 4.284 17 C -0.014 4.014 18 N -0.222 5.222 19 C 0.026 3.974 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.158 4.158 23 C -0.087 4.087 24 C -0.119 4.119 25 C -0.056 4.056 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.054 0.946 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.104 -12.848 -1.826 13.611 hybrid contribution 0.212 1.567 0.803 1.774 sum 4.316 -11.281 -1.023 12.121 Atomic orbital electron populations 1.69886 1.05873 1.26478 1.50260 1.24913 0.94831 0.99039 0.94829 0.86548 0.80158 0.83726 0.77659 1.19782 1.20924 1.20994 1.21097 0.92914 0.90305 1.51328 0.92617 1.18737 0.92461 0.90064 0.95207 0.94496 1.21705 1.00191 0.94768 0.98503 1.21724 0.97026 0.96066 1.00897 1.22290 0.95549 0.99894 0.89240 1.58656 1.21363 1.02440 1.37524 1.19437 0.87687 0.92589 0.91741 1.22228 1.05640 1.01044 0.99515 1.22580 0.90197 0.94176 0.94485 1.68031 1.25005 1.28920 1.00246 1.18767 0.94397 0.90712 0.93552 1.20670 1.00454 1.00653 0.91387 1.20882 0.97590 0.94465 0.98288 1.20896 0.98056 0.98313 0.98491 1.21251 0.97729 0.98059 0.91693 1.18587 1.00522 0.98316 0.94442 1.22691 0.96579 0.85728 1.00601 0.92938 0.94750 0.88666 0.92685 0.91816 0.91326 0.93901 0.84582 0.83050 0.85198 0.85744 0.85656 0.84013 0.94643 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 11.36 55.43 0.63 -23.58 16 2 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -13.50 8.56 -34.44 -0.29 -13.79 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.27 2.26 -91.69 -0.21 1.06 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.51 5.03 -26.61 -0.13 -2.64 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C 0.06 0.93 4.17 -3.83 -0.02 0.91 16 14 N -0.49 -8.73 4.23 -170.72 -0.72 -9.45 16 15 C 0.19 3.29 5.40 -83.39 -0.45 2.84 16 16 C -0.26 -3.81 8.88 -39.24 -0.35 -4.16 16 17 C 0.16 2.17 11.13 -17.58 -0.20 1.98 16 18 N -0.51 -8.11 10.33 -11.09 -0.11 -8.22 16 19 C 0.15 2.39 6.60 -84.88 -0.56 1.83 16 20 C -0.11 -1.55 9.98 -39.46 -0.39 -1.94 16 21 C -0.09 -1.13 9.94 -39.95 -0.40 -1.53 16 22 C -0.14 -1.88 9.96 -39.91 -0.40 -2.27 16 23 C -0.07 -1.10 8.33 -39.57 -0.33 -1.43 16 24 C -0.11 -1.94 5.63 -106.66 -0.60 -2.54 16 25 C 0.07 1.35 4.09 -3.84 -0.02 1.34 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.37 6.17 -51.93 -0.32 2.05 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.99 7.58 -51.93 -0.39 0.60 16 32 H 0.04 0.68 7.28 -51.93 -0.38 0.30 16 33 H 0.14 1.74 6.02 -52.49 -0.32 1.42 16 34 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.14 2.42 6.20 -52.49 -0.33 2.09 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.49 5.48 -51.93 -0.28 1.21 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -28.14 315.87 -10.43 -38.57 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.36 Total: 3.41 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -4.60 Total: -21.02 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.21 Total: -41.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.14 -10.43 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.553 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds