Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47317 * 2 1 4 4 C 1.34227 * 117.00417 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00661 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47336 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.46899 * 180.02562 * 7 6 4 9 9 N 1.27544 * 119.41276 * 0.02562 * 8 7 6 10 10 N 1.39829 * 121.44364 * 180.15487 * 9 8 7 11 11 C 1.46491 * 119.81282 * 199.26778 * 10 9 8 12 12 C 1.50702 * 109.46957 * 269.99657 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.34799 * 120.37317 * 19.53945 * 10 9 8 21 21 O 1.21292 * 120.23082 * 179.27416 * 20 10 9 22 22 C 1.50836 * 119.53080 * 359.02827 * 20 10 9 23 23 C 1.50512 * 119.41005 * 180.02562 * 8 7 6 24 24 H 1.09000 * 109.46837 * 299.99668 * 1 2 3 25 25 H 1.08999 * 109.47435 * 59.99619 * 1 2 3 26 26 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46837 * 240.00332 * 2 1 3 28 28 H 1.08999 * 109.47435 * 120.00381 * 2 1 3 29 29 H 1.09008 * 109.46427 * 60.00218 * 6 4 3 30 30 H 1.08995 * 109.46794 * 300.00762 * 6 4 3 31 31 H 1.08997 * 109.46940 * 60.01019 * 7 6 4 32 32 H 1.08997 * 109.47344 * 300.00419 * 7 6 4 33 33 H 1.09004 * 109.47166 * 149.99923 * 11 10 9 34 34 H 1.08994 * 109.47507 * 29.99629 * 11 10 9 35 35 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.63789 * 207.61631 * 22 20 10 37 37 H 1.09007 * 109.32723 * 87.43905 * 22 20 10 38 38 H 1.08994 * 109.45134 * 265.84408 * 23 8 7 39 39 H 1.09002 * 109.44917 * 25.78529 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8572 0.0001 8 6 6.0247 4.2499 0.0002 9 7 5.2374 5.2534 0.0007 10 7 5.7257 6.5636 -0.0025 11 6 4.8568 7.6657 0.4175 12 6 4.1163 8.2054 -0.7790 13 1 4.2766 7.7706 -1.7545 14 6 3.2295 9.2502 -0.6271 15 7 2.5792 9.7176 -1.6703 16 14 2.9518 10.0018 1.0603 17 1 3.9131 11.1138 1.2712 18 1 1.5642 10.5239 1.1473 19 1 3.1570 8.9653 2.1037 20 6 6.9898 6.8189 -0.3949 21 8 7.4066 7.9579 -0.4091 22 6 7.8840 5.6777 -0.8109 23 6 7.5188 4.4317 -0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.5844 3.4700 0.8896 30 1 3.5852 3.4690 -0.8904 31 1 5.7846 2.3249 -0.8897 32 1 5.7846 2.3254 0.8903 33 1 5.4621 8.4581 0.8579 34 1 4.1407 7.3031 1.1548 35 1 1.9556 10.4529 -1.5635 36 1 8.9251 5.9414 -0.6247 37 1 7.7419 5.4766 -1.8728 38 1 7.8704 4.5493 1.0247 39 1 7.9907 3.5570 -0.4477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = -90.904912 kcal Electronic energy + Delta-G solvation = -21912.050800 eV Core-core repulsion = 18434.608563 eV Total energy + Delta-G solvation = -3477.442237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58550 -39.98382 -37.35834 -36.67953 -34.50130 -33.13933 -32.29312 -31.87067 -30.34748 -28.23637 -25.98627 -24.52558 -23.11676 -22.31694 -21.26061 -20.63001 -17.87767 -17.21245 -16.97069 -16.88339 -16.58995 -16.16125 -15.78508 -15.50748 -14.95191 -14.16590 -13.88270 -13.74593 -13.62998 -13.34649 -12.97681 -12.79814 -12.50062 -12.32756 -12.15018 -12.08603 -11.94351 -11.80567 -11.64106 -11.30023 -11.23828 -10.73959 -10.68325 -10.60510 -10.50658 -10.18721 -10.03673 -9.53493 -8.95820 -8.60069 -7.78649 -6.09247 -4.08225 2.00899 2.15805 2.56993 2.99811 3.28062 3.30537 3.35325 3.36629 4.23797 4.38314 4.53658 4.60804 4.70760 4.76880 4.79963 5.00287 5.03676 5.09007 5.18492 5.24235 5.31984 5.43926 5.53817 5.55231 5.66317 5.74754 5.77076 5.83443 5.95777 5.98305 6.35746 6.52406 6.72120 6.98376 7.09895 7.53695 7.68353 8.33819 8.50613 8.79387 8.94119 9.48708 11.04190 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.004717 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.918164 B = 5934.557131 C = 7669.452362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.518 6.518 6 C -0.109 4.109 7 C -0.040 4.040 8 C 0.071 3.929 9 N -0.223 5.223 10 N -0.434 5.434 11 C 0.235 3.765 12 C -0.526 4.526 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.895 5.895 16 Si 0.874 3.126 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.487 3.513 21 O -0.521 6.521 22 C -0.144 4.144 23 C -0.112 4.112 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -20.064 4.982 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.310 3.690 5 O -0.407 6.407 6 C -0.147 4.147 7 C -0.079 4.079 8 C -0.123 4.123 9 N -0.030 5.030 10 N -0.253 5.253 11 C 0.116 3.884 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.128 4.128 15 N -0.534 5.534 16 Si 0.701 3.299 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.190 1.190 20 C 0.274 3.726 21 O -0.394 6.394 22 C -0.185 4.185 23 C -0.152 4.152 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.914 -19.145 4.928 19.861 hybrid contribution 0.538 0.264 0.578 0.833 sum 2.452 -18.881 5.506 19.819 Atomic orbital electron populations 1.21813 0.92671 1.02808 1.03818 1.23004 0.95432 0.80416 1.02405 1.86560 1.24774 1.32128 1.83832 1.23990 0.80435 0.93015 0.71578 1.90643 1.60414 1.43487 1.46149 1.21312 0.95468 0.89926 1.07997 1.20193 0.92673 0.90348 1.04680 1.24572 0.92965 0.94646 1.00107 1.73672 1.29026 0.89994 1.10289 1.49145 1.11556 1.02694 1.61935 1.19749 0.89238 0.82510 0.96926 1.21214 1.23392 1.17120 0.94741 0.90670 1.24804 0.95176 0.96055 0.96775 1.69885 1.27427 1.26546 1.29519 0.86880 0.77930 0.80265 0.84829 1.19867 1.20822 1.18957 1.21001 0.82711 0.90684 0.78195 1.90714 1.73701 1.23006 1.51951 1.21827 1.00933 0.93440 1.02283 1.20995 0.93467 0.98792 1.01981 0.91370 0.91300 0.90393 0.91314 0.91354 0.86596 0.86404 0.88799 0.88714 0.93802 0.94059 0.92469 0.87584 0.88259 0.89352 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.24 10.22 -39.25 -0.40 -4.65 16 4 C 0.47 5.63 7.96 36.01 0.29 5.92 16 5 O -0.52 -7.03 15.73 -18.75 -0.29 -7.33 16 6 C -0.11 -1.26 5.02 -27.88 -0.14 -1.40 16 7 C -0.04 -0.41 4.86 -27.88 -0.14 -0.54 16 8 C 0.07 0.94 6.78 -79.19 -0.54 0.40 16 9 N -0.22 -4.02 9.93 35.29 0.35 -3.66 16 10 N -0.43 -9.49 3.44 -61.42 -0.21 -9.71 16 11 C 0.23 5.92 4.51 -5.20 -0.02 5.90 16 12 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 13 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 14 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 16 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 20 C 0.49 10.13 7.56 -10.91 -0.08 10.05 16 21 O -0.52 -12.91 16.70 5.55 0.09 -12.82 16 22 C -0.14 -2.02 6.22 -27.78 -0.17 -2.19 16 23 C -0.11 -1.23 6.03 -27.94 -0.17 -1.40 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.12 1.35 8.05 -51.92 -0.42 0.93 16 30 H 0.12 1.47 8.05 -51.93 -0.42 1.05 16 31 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.04 1.14 6.87 -51.93 -0.36 0.79 16 34 H 0.04 1.00 7.19 -51.93 -0.37 0.63 16 35 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -36.13 334.96 -5.91 -42.04 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.80 Total: -1.93 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.80 Total: 3.14 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.91 Total: -40.38 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.60 Total: -24.79 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.13 -5.91 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.867 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds