Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47317 * 2 1 4 4 C 1.34227 * 117.00417 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00661 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47336 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.46899 * 180.02562 * 7 6 4 9 9 N 1.27544 * 119.41276 * 0.02562 * 8 7 6 10 10 N 1.39829 * 121.44364 * 180.15487 * 9 8 7 11 11 C 1.46491 * 119.81282 * 199.26778 * 10 9 8 12 12 C 1.50702 * 109.46957 * 269.99657 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.34799 * 120.37317 * 19.53945 * 10 9 8 21 21 O 1.21292 * 120.23082 * 179.27416 * 20 10 9 22 22 C 1.50836 * 119.53080 * 359.02827 * 20 10 9 23 23 C 1.50512 * 119.41005 * 180.02562 * 8 7 6 24 24 H 1.09000 * 109.46837 * 299.99668 * 1 2 3 25 25 H 1.08999 * 109.47435 * 59.99619 * 1 2 3 26 26 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46837 * 240.00332 * 2 1 3 28 28 H 1.08999 * 109.47435 * 120.00381 * 2 1 3 29 29 H 1.09008 * 109.46427 * 60.00218 * 6 4 3 30 30 H 1.08995 * 109.46794 * 300.00762 * 6 4 3 31 31 H 1.08997 * 109.46940 * 60.01019 * 7 6 4 32 32 H 1.08997 * 109.47344 * 300.00419 * 7 6 4 33 33 H 1.09004 * 109.47166 * 149.99923 * 11 10 9 34 34 H 1.08994 * 109.47507 * 29.99629 * 11 10 9 35 35 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.63789 * 207.61631 * 22 20 10 37 37 H 1.09007 * 109.32723 * 87.43905 * 22 20 10 38 38 H 1.08994 * 109.45134 * 265.84408 * 23 8 7 39 39 H 1.09002 * 109.44917 * 25.78529 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8572 0.0001 8 6 6.0247 4.2499 0.0002 9 7 5.2374 5.2534 0.0007 10 7 5.7257 6.5636 -0.0025 11 6 4.8568 7.6657 0.4175 12 6 4.1163 8.2054 -0.7790 13 1 4.2766 7.7706 -1.7545 14 6 3.2295 9.2502 -0.6271 15 7 2.5792 9.7176 -1.6703 16 14 2.9518 10.0018 1.0603 17 1 3.9131 11.1138 1.2712 18 1 1.5642 10.5239 1.1473 19 1 3.1570 8.9653 2.1037 20 6 6.9898 6.8189 -0.3949 21 8 7.4066 7.9579 -0.4091 22 6 7.8840 5.6777 -0.8109 23 6 7.5188 4.4317 -0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.5844 3.4700 0.8896 30 1 3.5852 3.4690 -0.8904 31 1 5.7846 2.3249 -0.8897 32 1 5.7846 2.3254 0.8903 33 1 5.4621 8.4581 0.8579 34 1 4.1407 7.3031 1.1548 35 1 1.9556 10.4529 -1.5635 36 1 8.9251 5.9414 -0.6247 37 1 7.7419 5.4766 -1.8728 38 1 7.8704 4.5493 1.0247 39 1 7.9907 3.5570 -0.4477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = -116.091740 kcal Electronic energy + Delta-G solvation = -21913.142983 eV Core-core repulsion = 18434.608563 eV Total energy + Delta-G solvation = -3478.534420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60575 -41.32276 -38.67781 -37.69488 -36.10319 -34.68107 -33.84498 -32.60775 -31.72488 -29.93016 -27.27436 -25.67435 -24.27466 -23.70685 -22.60839 -21.59947 -19.20949 -18.91786 -18.48751 -17.85105 -17.74076 -17.45450 -17.03864 -16.88486 -16.07914 -15.80398 -15.20960 -14.88561 -14.78964 -14.50484 -14.24135 -13.94269 -13.88939 -13.67130 -13.55839 -13.11527 -13.00961 -12.88235 -12.79469 -12.53251 -12.42857 -12.32527 -12.19203 -11.83195 -11.70006 -11.50621 -11.47121 -11.40590 -10.85677 -10.40076 -9.38715 -8.36620 -6.42553 0.80345 1.20643 1.30681 1.34989 1.43483 1.57073 1.73797 1.83844 2.28978 2.94848 3.11520 3.51331 3.65732 3.82188 4.04283 4.07572 4.11840 4.18808 4.24742 4.30111 4.38399 4.55923 4.67519 4.78046 4.80908 4.86018 4.88518 4.93541 4.95054 5.02451 5.08647 5.18548 5.35010 5.40414 5.51481 5.62590 6.16731 6.55916 6.75789 6.86552 7.19295 7.41645 8.80779 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.004717 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.918164 B = 5934.557131 C = 7669.452362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.371 6.371 4 C 0.472 3.528 5 O -0.531 6.531 6 C -0.109 4.109 7 C -0.035 4.035 8 C 0.107 3.893 9 N -0.277 5.277 10 N -0.452 5.452 11 C 0.247 3.753 12 C -0.536 4.536 13 H 0.023 0.977 14 C 0.014 3.986 15 N -0.944 5.944 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.240 1.240 20 C 0.468 3.532 21 O -0.581 6.581 22 C -0.133 4.133 23 C -0.110 4.110 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.032 0.968 34 H 0.051 0.949 35 H 0.270 0.730 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -22.821 6.757 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.288 6.288 4 C 0.317 3.683 5 O -0.421 6.421 6 C -0.147 4.147 7 C -0.074 4.074 8 C -0.086 4.086 9 N -0.083 5.083 10 N -0.268 5.268 11 C 0.125 3.875 12 C -0.574 4.574 13 H 0.041 0.959 14 C -0.185 4.185 15 N -0.583 5.583 16 Si 0.771 3.229 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.164 1.164 20 C 0.258 3.742 21 O -0.459 6.459 22 C -0.173 4.173 23 C -0.149 4.149 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.885 -21.967 6.701 23.147 hybrid contribution 0.235 0.901 -0.076 0.934 sum 3.121 -21.066 6.624 22.303 Atomic orbital electron populations 1.21843 0.91151 1.04297 1.03438 1.23279 0.96707 0.79181 1.02830 1.86557 1.24703 1.33906 1.83592 1.23950 0.80474 0.92835 0.71073 1.90630 1.60653 1.43878 1.46980 1.21281 0.96663 0.89571 1.07147 1.20390 0.91495 0.88493 1.07054 1.25414 0.94644 0.94545 0.93968 1.73800 1.30096 0.88889 1.15495 1.48992 1.11454 1.04012 1.62378 1.19279 0.89292 0.83828 0.95064 1.21393 1.24325 1.17491 0.94237 0.95856 1.25837 0.94559 0.96354 1.01707 1.70041 1.28427 1.27456 1.32407 0.85700 0.78209 0.79625 0.79359 1.19570 1.19537 1.16363 1.22320 0.82990 0.91916 0.76999 1.90663 1.74841 1.25731 1.54657 1.21900 1.00474 0.91855 1.03098 1.21203 0.91530 0.99030 1.03156 0.91569 0.91826 0.87968 0.91037 0.90764 0.87012 0.87914 0.86426 0.85884 0.95051 0.93102 0.92060 0.85157 0.87314 0.87411 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.37 -8.48 10.22 -51.38 -0.53 -9.00 16 4 C 0.47 10.64 7.96 71.24 0.57 11.20 16 5 O -0.53 -13.09 15.73 21.96 0.35 -12.74 16 6 C -0.11 -2.34 5.02 29.85 0.15 -2.19 16 7 C -0.04 -0.59 4.86 29.85 0.15 -0.45 16 8 C 0.11 2.51 6.78 46.54 0.32 2.82 16 9 N -0.28 -9.79 9.93 -41.56 -0.41 -10.21 16 10 N -0.45 -20.12 3.44 -466.61 -1.61 -21.73 16 11 C 0.25 12.80 4.51 85.64 0.39 13.19 16 12 C -0.54 -33.11 9.94 25.60 0.25 -32.86 16 13 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 14 C 0.01 0.83 5.47 84.66 0.46 1.29 16 15 N -0.94 -60.91 13.96 21.45 0.30 -60.61 16 16 Si 0.95 45.22 27.47 68.60 1.88 47.11 16 17 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 20 C 0.47 19.71 7.56 87.70 0.66 20.37 16 21 O -0.58 -29.99 16.70 -3.07 -0.05 -30.05 16 22 C -0.13 -3.39 6.22 29.91 0.19 -3.20 16 23 C -0.11 -1.87 6.03 29.81 0.18 -1.70 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.11 2.50 8.05 -2.38 -0.02 2.48 16 30 H 0.10 2.55 8.05 -2.39 -0.02 2.53 16 31 H 0.12 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.12 1.55 8.10 -2.39 -0.02 1.54 16 33 H 0.03 1.69 6.87 -2.38 -0.02 1.67 16 34 H 0.05 2.50 7.19 -2.39 -0.02 2.48 16 35 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.15 1.16 8.08 -2.39 -0.02 1.14 16 Total: -1.00 -85.36 334.96 5.41 -79.94 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.98 Total: 8.61 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 4.50 Total: 8.68 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -1.72 Total: -92.55 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.23 Total: -51.79 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -85.36 5.41 -79.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.149 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds