Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47444 * 175.00243 * 4 3 2 6 6 N 1.46904 * 109.47219 * 295.00266 * 4 3 2 7 7 C 1.46897 * 111.00087 * 205.00002 * 6 4 3 8 8 C 1.50700 * 109.47368 * 180.02562 * 7 6 4 9 9 O 1.21285 * 119.99655 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99764 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46928 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99725 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99790 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00189 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99636 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47268 * 90.00112 * 16 14 12 18 18 H 1.48508 * 109.46898 * 210.00234 * 16 14 12 19 19 H 1.48503 * 109.47286 * 329.99727 * 16 14 12 20 20 C 1.50703 * 109.46935 * 55.00002 * 4 3 2 21 21 C 1.34517 * 125.78677 * 100.00296 * 20 4 3 22 22 C 1.41383 * 106.83829 * 179.97438 * 21 20 4 23 23 C 1.34513 * 106.84299 * 0.02562 * 22 21 20 24 24 O 1.34298 * 125.79082 * 279.69125 * 20 4 3 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 1.00903 * 110.99791 * 328.95612 * 6 4 3 31 31 H 1.08999 * 109.47257 * 299.99772 * 7 6 4 32 32 H 1.08999 * 109.47131 * 60.00010 * 7 6 4 33 33 H 0.96995 * 120.00257 * 359.97438 * 10 8 7 34 34 H 1.09007 * 109.47028 * 299.99537 * 11 10 8 35 35 H 1.08993 * 109.47639 * 59.99759 * 11 10 8 36 36 H 0.97001 * 120.00004 * 180.02562 * 15 14 12 37 37 H 1.07995 * 126.57663 * 0.03418 * 21 20 4 38 38 H 1.08002 * 126.57847 * 179.97438 * 22 21 20 39 39 H 1.08002 * 125.79253 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1764 -0.0889 6 7 3.9769 0.5626 1.2562 7 6 5.3586 0.9453 1.5760 8 6 5.7757 0.2892 2.8669 9 8 4.9982 -0.4264 3.4623 10 7 7.0123 0.4984 3.3605 11 6 7.4174 -0.1390 4.6158 12 6 8.8346 0.2545 4.9444 13 1 9.3790 0.9132 4.2840 14 6 9.4359 -0.2263 6.0882 15 7 8.7727 -1.0279 6.8926 16 14 11.1927 0.2609 6.4952 17 1 11.1856 1.4977 7.3172 18 1 11.8469 -0.8347 7.2548 19 1 11.9423 0.5070 5.2370 20 6 3.9723 0.3323 -1.1629 21 6 4.4511 0.7868 -2.3349 22 6 4.7338 -0.3479 -3.1296 23 6 4.4103 -1.4279 -2.3959 24 8 3.9551 -1.0100 -1.2034 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 3.3526 0.7952 2.0140 31 1 6.0207 0.6204 0.7733 32 1 5.4204 2.0284 1.6819 33 1 7.6340 1.0710 2.8846 34 1 6.7551 0.1857 5.4184 35 1 7.3560 -1.2220 4.5098 36 1 9.1956 -1.3659 7.6975 37 1 4.5933 1.8202 -2.6147 38 1 5.1321 -0.3475 -4.1335 39 1 4.5055 -2.4567 -2.7104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754339575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = -59.828250 kcal Electronic energy + Delta-G solvation = -21779.601522 eV Core-core repulsion = 18303.506870 eV Total energy + Delta-G solvation = -3476.094652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41956 -38.96840 -38.17454 -35.84158 -34.10086 -32.86275 -32.30463 -31.10925 -28.59332 -27.66395 -26.36304 -25.10450 -23.01198 -22.28491 -21.57882 -20.07553 -19.65387 -17.47963 -17.30773 -16.64767 -16.25427 -16.06925 -15.55182 -15.34201 -15.15267 -14.92314 -14.41095 -14.36863 -13.87204 -13.47174 -13.08997 -12.72589 -12.69321 -12.50662 -12.33849 -12.09871 -11.88551 -11.69365 -11.43938 -11.35148 -10.96120 -10.86055 -10.29987 -9.85900 -9.80980 -9.37487 -9.02637 -8.71323 -8.46460 -8.40884 -7.83436 -6.14582 -4.21477 1.85242 2.64189 3.12085 3.25258 3.31319 3.33929 3.42219 3.53594 3.73837 4.29593 4.45762 4.60470 4.69920 4.96995 5.07680 5.09084 5.09473 5.17321 5.21169 5.21442 5.27656 5.38231 5.50078 5.53979 5.66150 5.82993 5.88338 6.14232 6.49662 6.75149 6.99836 7.31231 7.35427 7.37393 7.48160 7.55448 7.69787 7.99627 8.66492 8.81245 9.15208 9.45205 10.95645 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.003258 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.096694 B = 8592.674207 C = 9254.471397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.061 3.939 4 C 0.166 3.834 5 H 0.089 0.911 6 N -0.654 5.654 7 C 0.039 3.961 8 C 0.498 3.502 9 O -0.540 6.540 10 N -0.715 5.715 11 C 0.251 3.749 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.023 3.977 21 C -0.227 4.227 22 C -0.221 4.221 23 C -0.045 4.045 24 O -0.138 6.138 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.359 0.641 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 6.946 -19.224 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.016 4.016 4 C 0.055 3.945 5 H 0.107 0.893 6 N -0.289 5.289 7 C -0.094 4.094 8 C 0.282 3.718 9 O -0.418 6.418 10 N -0.364 5.364 11 C 0.130 3.870 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.030 4.030 21 C -0.247 4.247 22 C -0.240 4.240 23 C -0.114 4.114 24 O -0.031 6.031 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.008 5.356 -18.612 23.330 hybrid contribution 1.130 1.682 0.016 2.026 sum -11.878 7.038 -18.596 23.161 Atomic orbital electron populations 1.22750 0.81438 1.02904 0.99534 1.88120 1.19022 1.25928 1.95201 1.22714 0.91819 0.86264 1.00833 1.20151 0.93309 0.93524 0.87479 0.89335 1.59902 1.02505 1.62276 1.04217 1.21942 0.91647 0.98080 0.97709 1.20259 0.83023 0.82457 0.86102 1.90678 1.52250 1.38293 1.60583 1.46433 1.13246 1.49805 1.26910 1.19089 0.94819 0.93517 0.79573 1.21234 0.97947 1.30751 1.08205 0.91923 1.24957 0.98509 0.94736 0.95854 1.69979 1.37285 1.31933 1.13074 0.86416 0.83800 0.78174 0.78513 1.20494 1.21001 1.19746 1.22083 1.02974 0.81449 0.96448 1.21496 1.08453 1.00000 0.94744 1.21704 1.08324 0.92225 1.01772 1.24083 1.02859 1.00040 0.84376 1.84200 1.63869 1.21677 1.33307 0.94091 0.94498 0.89544 0.92258 0.92249 0.81939 0.88624 0.92615 0.77824 0.95604 0.95518 0.92456 0.83982 0.83942 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.36 -4.55 10.03 -35.23 -0.35 -4.91 16 3 C 0.06 0.60 5.48 37.16 0.20 0.80 16 4 C 0.17 1.86 2.87 -68.86 -0.20 1.66 16 5 H 0.09 0.75 7.79 -51.93 -0.40 0.35 16 6 N -0.65 -9.48 5.86 -109.22 -0.64 -10.12 16 7 C 0.04 0.56 5.96 -4.98 -0.03 0.53 16 8 C 0.50 10.13 7.87 -10.99 -0.09 10.05 16 9 O -0.54 -13.39 16.20 5.55 0.09 -13.30 16 10 N -0.71 -15.26 5.55 -61.47 -0.34 -15.60 16 11 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 12 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.02 0.30 5.47 -35.62 -0.19 0.10 16 21 C -0.23 -2.58 10.80 -39.70 -0.43 -3.01 16 22 C -0.22 -2.45 10.91 -39.70 -0.43 -2.88 16 23 C -0.04 -0.53 12.09 29.42 0.36 -0.18 16 24 O -0.14 -2.08 10.53 5.71 0.06 -2.02 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.02 -51.93 -0.42 0.07 16 30 H 0.36 5.21 7.98 -39.29 -0.31 4.89 16 31 H 0.10 1.35 8.00 -51.93 -0.42 0.93 16 32 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 33 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -35.43 342.04 -6.11 -41.54 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.65 Total: 7.26 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.14 Total: 1.65 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.24 Total: -51.36 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.20 Total: -20.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.43 -6.11 -41.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754339575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.292 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds