Wall clock time and date at job start Tue Mar 31 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35772 * 116.99978 * 2 1 4 4 C 1.35573 * 126.07323 * 182.10319 * 3 2 1 5 5 C 1.41107 * 107.79301 * 179.84614 * 4 3 2 6 6 C 1.47595 * 125.98855 * 180.16492 * 5 4 3 7 7 O 1.21491 * 119.99653 * 0.31996 * 6 5 4 8 8 O 1.34727 * 120.00248 * 180.32256 * 6 5 4 9 9 C 1.45200 * 117.00207 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47297 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47148 * 300.00318 * 10 9 8 12 12 C 1.53001 * 109.46701 * 60.00032 * 10 9 8 13 13 C 1.50694 * 109.47365 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99893 * 0.40938 * 13 10 9 15 15 C 1.37879 * 120.00500 * 180.40796 * 13 10 9 16 16 N 1.31510 * 120.00159 * 194.27039 * 15 13 10 17 17 Si 1.86801 * 119.99446 * 14.26569 * 15 13 10 18 18 H 1.48501 * 109.46665 * 87.78829 * 17 15 13 19 19 H 1.48497 * 109.47137 * 207.78135 * 17 15 13 20 20 H 1.48495 * 109.47446 * 327.78609 * 17 15 13 21 21 N 1.31909 * 108.02491 * 0.41644 * 5 4 3 22 22 N 1.35848 * 126.07677 * 2.40727 * 3 2 1 23 23 C 1.46504 * 125.94964 * 359.97438 * 22 3 2 24 24 H 1.08994 * 109.47377 * 189.29361 * 1 2 3 25 25 H 1.08996 * 109.47537 * 309.30181 * 1 2 3 26 26 H 1.09004 * 109.46973 * 69.29369 * 1 2 3 27 27 H 1.08001 * 126.10267 * 359.97438 * 4 3 2 28 28 H 1.08992 * 109.47077 * 300.00197 * 9 8 6 29 29 H 1.09001 * 109.47068 * 60.00324 * 9 8 6 30 30 H 1.09007 * 109.47598 * 71.30477 * 11 10 9 31 31 H 1.09004 * 109.47355 * 191.30433 * 11 10 9 32 32 H 1.08999 * 109.47371 * 311.30599 * 11 10 9 33 33 H 1.09000 * 109.47354 * 60.00085 * 12 10 9 34 34 H 1.09005 * 109.46785 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47299 * 300.00100 * 12 10 9 36 36 H 0.97001 * 119.99726 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.46648 * 81.54322 * 23 22 3 38 38 H 1.08995 * 109.47313 * 201.54680 * 23 22 3 39 39 H 1.08995 * 109.46856 * 321.54828 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3835 1.4239 -0.0402 5 6 3.5976 2.8185 -0.0276 6 6 4.9088 3.4951 -0.0639 7 8 5.9298 2.8386 -0.1151 8 8 4.9736 4.8406 -0.0401 9 6 6.2965 5.4377 -0.0778 10 6 6.1693 6.9621 -0.0441 11 6 5.3623 7.4334 -1.2554 12 6 5.4549 7.3858 1.2408 13 6 7.5423 7.5818 -0.0826 14 1 8.4180 6.9517 -0.1334 15 6 7.6809 8.9533 -0.0530 16 7 8.8331 9.5048 -0.3656 17 14 6.2317 10.0281 0.4309 18 1 6.2137 10.1998 1.9059 19 1 6.3612 11.3563 -0.2204 20 1 4.9684 9.3826 -0.0078 21 7 2.4207 3.4117 0.0279 22 7 1.4312 2.4205 0.0461 23 6 -0.0147 2.6498 0.1041 24 1 -0.3634 -1.0141 0.1659 25 1 -0.3634 0.6509 0.7952 26 1 -0.3633 0.3634 -0.9613 27 1 4.1489 0.6629 -0.0776 28 1 6.8716 5.1016 0.7849 29 1 6.8053 5.1362 -0.9935 30 1 4.3167 7.1532 -1.1269 31 1 5.4396 8.5171 -1.3443 32 1 5.7554 6.9659 -2.1582 33 1 6.0298 7.0500 2.1039 34 1 5.3646 8.4718 1.2651 35 1 4.4618 6.9375 1.2692 36 1 8.9304 10.4697 -0.3451 37 1 -0.3593 2.5378 1.1322 38 1 -0.2370 3.6578 -0.2459 39 1 -0.5233 1.9243 -0.5306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774479906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:38 Heat of formation + Delta-G solvation = -6.589479 kcal Electronic energy + Delta-G solvation = -22261.066636 eV Core-core repulsion = 18787.280590 eV Total energy + Delta-G solvation = -3473.786045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86239 -39.84672 -38.55161 -36.77601 -35.01502 -33.78739 -31.69581 -30.48468 -28.37356 -27.11589 -26.24085 -26.05578 -24.89876 -23.48844 -21.74581 -20.14288 -19.09362 -18.41839 -17.09153 -16.88191 -16.01488 -15.91802 -15.89574 -15.58074 -15.39732 -15.00416 -14.83023 -14.16018 -13.67983 -13.40426 -13.20877 -13.14306 -12.81515 -12.31742 -12.00535 -11.84545 -11.83871 -11.77793 -11.51427 -10.99394 -10.63189 -10.30807 -10.21022 -10.14448 -10.03227 -9.69964 -9.44505 -9.05750 -8.67242 -8.57856 -8.42148 -6.12087 -4.09831 1.14023 1.82483 1.92399 2.44622 3.14814 3.27644 3.31834 3.41433 3.44083 3.95979 4.29622 4.41378 4.42876 4.61299 4.69073 4.78485 5.02249 5.04215 5.20074 5.33945 5.58049 5.67520 5.82663 5.95719 6.11889 6.21032 6.32867 6.61226 6.65260 6.77271 6.87824 6.88310 6.95373 7.03465 7.14024 7.28789 7.50220 7.75264 8.13067 8.46179 8.90822 9.51903 11.00602 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.003665 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.472199 B = 7637.290454 C = 8212.843026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.287 6.287 3 C 0.267 3.733 4 C -0.232 4.232 5 C 0.076 3.924 6 C 0.544 3.456 7 O -0.495 6.495 8 O -0.336 6.336 9 C 0.092 3.908 10 C 0.044 3.956 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.518 4.518 14 H 0.076 0.924 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.881 3.119 18 H -0.285 1.285 19 H -0.304 1.304 20 H -0.243 1.243 21 N -0.216 5.216 22 N -0.394 5.394 23 C 0.078 3.922 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.169 0.831 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.142 -16.752 0.915 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.193 6.193 3 C 0.101 3.899 4 C -0.261 4.261 5 C -0.089 4.089 6 C 0.384 3.616 7 O -0.381 6.381 8 O -0.251 6.251 9 C 0.019 3.981 10 C 0.043 3.957 11 C -0.195 4.195 12 C -0.204 4.204 13 C -0.555 4.555 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.527 5.527 17 Si 0.713 3.287 18 H -0.213 1.213 19 H -0.233 1.233 20 H -0.169 1.169 21 N -0.047 5.047 22 N -0.192 5.192 23 C -0.062 4.062 24 H 0.127 0.873 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.186 0.814 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.315 -15.938 0.918 26.631 hybrid contribution -0.481 -0.014 0.324 0.580 sum -21.795 -15.953 1.242 27.038 Atomic orbital electron populations 1.23674 0.77955 1.05345 1.01649 1.86304 1.21629 1.21466 1.89939 1.19503 0.90916 0.79006 1.00519 1.20291 0.92213 0.95086 1.18533 1.20843 0.91380 0.92169 1.04546 1.19509 0.86324 0.82118 0.73630 1.90857 1.34905 1.66912 1.45459 1.86627 1.37392 1.18991 1.82047 1.23539 0.78105 0.94508 1.01947 1.18581 0.96581 0.88040 0.92500 1.22200 0.97740 1.00999 0.98566 1.22324 0.99078 0.99684 0.99303 1.20667 0.90221 0.92106 1.52541 0.90548 1.24899 0.95752 0.97747 0.94000 1.69951 1.25134 1.11233 1.46421 0.87349 0.84580 0.78402 0.78372 1.21271 1.23273 1.16850 1.78044 0.95074 1.09962 1.21626 1.49229 1.07207 1.03032 1.59733 1.22518 0.74456 1.05825 1.03448 0.87303 0.91580 0.91855 0.81362 0.91438 0.91322 0.94759 0.92918 0.93832 0.93246 0.94098 0.93960 0.92510 0.90160 0.88029 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.43 101.05 0.95 0.99 16 2 O -0.29 -2.63 10.57 -19.03 -0.20 -2.83 16 3 C 0.27 3.11 7.78 -16.73 -0.13 2.97 16 4 C -0.23 -3.21 10.59 -39.45 -0.42 -3.63 16 5 C 0.08 1.24 7.12 -82.93 -0.59 0.65 16 6 C 0.54 10.20 7.97 34.55 0.28 10.48 16 7 O -0.50 -10.04 16.69 -19.26 -0.32 -10.36 16 8 O -0.34 -6.76 9.10 -40.57 -0.37 -7.13 16 9 C 0.09 1.99 4.24 37.16 0.16 2.14 16 10 C 0.04 1.04 0.58 -155.66 -0.09 0.95 16 11 C -0.14 -3.11 7.50 37.15 0.28 -2.83 16 12 C -0.15 -3.30 7.54 37.16 0.28 -3.02 16 13 C -0.52 -14.39 8.62 -34.44 -0.30 -14.69 16 14 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.08 2.25 5.30 -17.82 -0.09 2.16 16 16 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 17 Si 0.88 21.79 22.84 -169.99 -3.88 17.90 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 20 H -0.24 -5.60 4.56 56.52 0.26 -5.34 16 21 N -0.22 -3.31 12.61 33.33 0.42 -2.89 16 22 N -0.39 -4.46 4.04 -68.19 -0.28 -4.73 16 23 C 0.08 0.45 9.55 59.85 0.57 1.02 16 24 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.07 0.19 5.64 -51.93 -0.29 -0.10 16 26 H 0.06 0.18 6.67 -51.93 -0.35 -0.16 16 27 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.03 0.71 7.98 -51.93 -0.41 0.29 16 31 H 0.05 1.23 4.33 -51.93 -0.22 1.00 16 32 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.94 2.30 -51.93 -0.12 0.82 16 35 H 0.04 0.87 7.68 -51.93 -0.40 0.47 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 0.32 7.53 -51.93 -0.39 -0.07 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.28 4.81 -51.93 -0.25 0.03 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -33.92 314.88 -3.31 -37.22 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.09 Total: -2.80 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 0.90 Total: -2.81 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.92 Total: -33.93 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.89 Total: -20.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -3.88 Total: 17.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.92 -3.31 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774479906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.635 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds