Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.34227 * 125.74047 * 84.99993 * 4 2 1 6 6 C 1.38125 * 107.41061 * 179.97438 * 5 4 2 7 7 C 1.47283 * 126.43028 * 179.97438 * 6 5 4 8 8 O 1.21522 * 120.00204 * 0.02562 * 7 6 5 9 9 O 1.34755 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.45208 * 117.00051 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47096 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47160 * 64.99606 * 11 10 9 13 13 C 1.42902 * 113.99685 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46817 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00505 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99672 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99628 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00047 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47213 * 89.99967 * 18 16 14 20 20 H 1.48500 * 109.47118 * 209.99740 * 18 16 14 21 21 H 1.48499 * 109.47201 * 329.99656 * 18 16 14 22 22 C 1.41346 * 107.14429 * 0.02562 * 6 5 4 23 23 N 1.30435 * 108.01354 * 359.75219 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.07998 * 126.29509 * 359.96542 * 5 4 2 32 32 H 1.09003 * 109.46599 * 299.99578 * 10 9 7 33 33 H 1.08999 * 109.47279 * 59.98968 * 10 9 7 34 34 H 1.09003 * 109.46749 * 184.99662 * 11 10 9 35 35 H 1.08997 * 109.46566 * 304.99254 * 11 10 9 36 36 H 1.08992 * 109.47328 * 300.00424 * 13 12 11 37 37 H 1.09004 * 109.46889 * 60.00628 * 13 12 11 38 38 H 0.97001 * 119.99576 * 179.97438 * 17 16 14 39 39 H 1.07998 * 125.99424 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1901 -0.1362 -2.4064 6 6 2.6635 -1.1226 -3.2495 7 6 2.9943 -0.9690 -4.6764 8 8 2.8575 0.1097 -5.2192 9 8 3.4487 -2.0245 -5.3801 10 6 3.7553 -1.7998 -6.7816 11 6 4.2543 -3.1026 -7.4097 12 8 3.2013 -4.0686 -7.4032 13 6 3.5646 -5.3283 -7.9716 14 6 2.3856 -6.2649 -7.9121 15 1 1.4521 -5.9315 -7.4835 16 6 2.4987 -7.5477 -8.4049 17 7 1.4699 -8.3653 -8.3525 18 14 4.1135 -8.1247 -9.1456 19 1 4.9594 -8.7245 -8.0826 20 1 3.8422 -9.1405 -10.1943 21 1 4.8228 -6.9678 -9.7488 22 6 2.7696 -2.3075 -2.4861 23 7 2.3888 -2.0381 -1.2680 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.9942 0.8921 -2.6721 32 1 2.8569 -1.4664 -7.3010 33 1 4.5285 -1.0363 -6.8665 34 1 4.5681 -2.9140 -8.4364 35 1 5.0994 -3.4824 -6.8355 36 1 3.8638 -5.1856 -9.0099 37 1 4.3955 -5.7545 -7.4093 38 1 1.5493 -9.2677 -8.6996 39 1 3.1100 -3.2667 -2.8472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815236871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -59.432174 kcal Electronic energy + Delta-G solvation = -21294.720331 eV Core-core repulsion = 17818.642855 eV Total energy + Delta-G solvation = -3476.077477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63573 -39.79683 -37.11543 -36.18623 -35.89563 -32.66699 -30.88864 -30.70567 -29.86927 -27.87774 -27.54848 -24.63591 -22.65617 -22.05591 -21.80726 -20.63547 -20.11445 -18.11899 -17.02088 -16.73886 -16.40018 -15.76010 -15.73835 -15.28377 -15.04650 -14.76055 -14.49876 -14.30802 -13.47712 -13.35164 -13.20755 -12.90824 -12.73092 -12.71268 -12.49172 -12.38019 -11.92786 -11.74426 -11.65913 -11.26314 -11.08261 -10.82432 -10.60899 -10.37717 -10.22305 -9.84930 -9.78439 -9.17642 -8.93561 -8.87286 -8.47720 -6.09714 -4.08788 1.25056 1.98629 2.03154 2.95156 3.26229 3.26356 3.33064 3.33991 3.99039 4.31073 4.36805 4.43604 4.50433 4.53903 4.69369 4.91960 4.96162 5.02646 5.13617 5.21376 5.22656 5.24132 5.30453 5.45735 5.52732 5.53216 5.62934 5.75994 5.87666 6.05308 6.31460 6.57096 6.58852 6.67154 6.99805 7.37749 7.60156 7.97640 8.03066 8.66498 9.02396 9.49177 11.03362 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.003029 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.035006 B = 9240.769234 C = 9967.145853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.169 4.169 4 N -0.355 5.355 5 C 0.134 3.866 6 C -0.278 4.278 7 C 0.545 3.455 8 O -0.531 6.531 9 O -0.337 6.337 10 C 0.077 3.923 11 C 0.058 3.942 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.108 3.892 23 N -0.300 5.300 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.187 0.813 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 20.274 16.219 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.134 5.134 5 C -0.018 4.018 6 C -0.291 4.291 7 C 0.391 3.609 8 O -0.422 6.422 9 O -0.252 6.252 10 C 0.003 3.997 11 C -0.020 4.020 12 O -0.294 6.294 13 C 0.093 3.907 14 C -0.556 4.556 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.079 4.079 23 N -0.119 5.119 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.204 0.796 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.021 0.979 37 H 0.018 0.982 38 H 0.076 0.924 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.939 19.993 17.380 26.654 hybrid contribution 1.165 -0.114 -1.535 1.930 sum 4.104 19.879 15.845 25.750 Atomic orbital electron populations 1.22268 0.93050 1.03817 1.03406 1.21429 0.95255 0.92845 0.85488 1.22255 1.02554 0.93772 1.04084 1.48826 1.48321 1.07913 1.08336 1.22800 0.94917 0.99311 0.84760 1.19356 1.21309 0.95450 0.92992 1.19945 0.73228 0.81751 0.86026 1.90798 1.51999 1.27847 1.71562 1.86629 1.75707 1.38228 1.24643 1.23149 1.01507 0.97470 0.77558 1.22406 0.92034 0.89109 0.98466 1.87986 1.35038 1.23453 1.82913 1.20628 0.97113 0.81143 0.91817 1.20889 0.98600 0.95614 1.40546 0.89902 1.24775 0.96645 0.96123 0.95463 1.69881 1.30094 1.06981 1.46419 0.86843 0.84229 0.79048 0.79575 1.19889 1.20812 1.19104 1.24369 0.94955 0.99269 0.89348 1.77278 1.21425 0.92352 1.20821 0.91622 0.90130 0.91203 0.87363 0.89583 0.91230 0.91221 0.79592 0.90358 0.90341 0.91859 0.93022 0.97878 0.98163 0.92368 0.78156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 9.52 37.16 0.35 -0.59 16 2 C 0.15 0.97 3.91 -67.94 -0.27 0.70 16 3 C -0.17 -0.69 8.82 37.15 0.33 -0.36 16 4 N -0.36 -3.65 3.50 -54.31 -0.19 -3.84 16 5 C 0.13 1.45 10.39 -16.55 -0.17 1.28 16 6 C -0.28 -3.81 6.13 -105.08 -0.64 -4.46 16 7 C 0.54 8.69 7.95 34.41 0.27 8.97 16 8 O -0.53 -9.12 16.69 -19.28 -0.32 -9.44 16 9 O -0.34 -5.74 10.04 -43.42 -0.44 -6.18 16 10 C 0.08 1.21 5.86 37.16 0.22 1.43 16 11 C 0.06 1.00 6.33 37.16 0.24 1.23 16 12 O -0.37 -8.83 10.30 -38.80 -0.40 -9.23 16 13 C 0.17 4.28 4.76 36.00 0.17 4.45 16 14 C -0.52 -15.57 9.99 -34.44 -0.34 -15.91 16 15 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.07 2.12 5.47 -17.81 -0.10 2.02 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 18 Si 0.88 21.41 27.47 -169.99 -4.67 16.75 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 22 C 0.11 1.46 11.87 -16.96 -0.20 1.26 16 23 N -0.30 -3.91 12.50 30.87 0.39 -3.53 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.26 7.13 -51.93 -0.37 -0.11 16 31 H 0.19 1.50 7.23 -52.49 -0.38 1.12 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 37 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.20 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -35.82 341.15 -5.62 -41.43 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -5.76 Total: -4.07 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.14 Total: 0.02 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.97 Total: -34.42 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.16 Total: -24.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.82 -5.62 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.999 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds