Wall clock time and date at job start Tue Mar 31 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35861 * 126.12693 * 299.69624 * 4 2 1 6 6 N 1.30157 * 109.01902 * 179.81731 * 5 4 2 7 7 C 1.35796 * 108.85617 * 0.44141 * 6 5 4 8 8 C 1.47174 * 126.24337 * 179.72569 * 7 6 5 9 9 O 1.21545 * 120.00269 * 179.97438 * 8 7 6 10 10 O 1.34790 * 119.99856 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99799 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46958 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.47668 * 64.99885 * 12 11 10 14 14 C 1.42899 * 114.00300 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46999 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99438 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99608 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47380 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47580 * 119.99866 * 19 17 15 22 22 H 1.48501 * 109.47278 * 239.99985 * 19 17 15 23 23 C 1.35330 * 126.12356 * 119.99654 * 4 2 1 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08005 * 125.49096 * 359.97164 * 5 4 2 32 32 H 1.09004 * 109.46609 * 299.99247 * 11 10 8 33 33 H 1.08997 * 109.47424 * 59.99558 * 11 10 8 34 34 H 1.09003 * 109.46777 * 184.99928 * 12 11 10 35 35 H 1.08998 * 109.46919 * 304.99682 * 12 11 10 36 36 H 1.08996 * 109.46930 * 299.99781 * 14 13 12 37 37 H 1.08996 * 109.47070 * 59.99440 * 14 13 12 38 38 H 0.97003 * 119.99426 * 180.02562 * 18 17 15 39 39 H 1.07999 * 126.57142 * 359.96815 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7729 -0.3333 2.4837 6 7 2.3632 -1.1784 3.2783 7 6 3.0169 -2.1028 2.5285 8 6 3.8142 -3.2302 3.0376 9 8 4.3533 -3.9934 2.2603 10 8 3.9457 -3.4171 4.3660 11 6 4.7469 -4.5491 4.7963 12 6 4.7801 -4.5985 6.3252 13 8 3.4652 -4.8553 6.8223 14 6 3.3851 -4.9210 8.2475 15 6 1.9611 -5.1939 8.6585 16 1 1.1941 -5.3064 7.9066 17 6 1.6378 -5.3010 9.9946 18 7 2.5721 -5.1655 10.9101 19 14 -0.1271 -5.6400 10.5041 20 1 -0.9795 -5.7503 9.2931 21 1 -0.1861 -6.9115 11.2689 22 1 -0.6190 -4.5270 11.3553 23 6 2.7996 -1.7955 1.2164 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.1810 0.5139 2.7974 32 1 4.3090 -5.4707 4.4128 33 1 5.7619 -4.4423 4.4137 34 1 5.4524 -5.3934 6.6484 35 1 5.1346 -3.6431 6.7119 36 1 4.0285 -5.7223 8.6110 37 1 3.7105 -3.9721 8.6738 38 1 2.3446 -5.2413 11.8501 39 1 3.1781 -2.3317 0.3587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815243473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:59 Heat of formation + Delta-G solvation = -77.324482 kcal Electronic energy + Delta-G solvation = -21252.986989 eV Core-core repulsion = 17776.133643 eV Total energy + Delta-G solvation = -3476.853345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.47236 -39.80087 -36.92074 -36.42397 -35.78237 -32.67882 -31.51439 -30.34001 -29.52201 -27.93742 -26.84211 -24.35968 -23.43972 -22.31307 -21.78861 -20.77466 -20.13716 -17.79751 -17.05250 -16.47684 -16.39056 -16.05017 -15.70889 -15.08362 -14.94029 -14.62026 -14.34248 -14.17415 -14.14085 -13.57055 -13.45207 -12.91993 -12.85076 -12.67942 -12.41732 -12.01566 -11.84822 -11.83335 -11.30570 -10.82262 -10.79120 -10.67112 -10.46490 -10.22704 -10.18809 -10.02355 -9.95048 -9.01483 -8.85493 -8.77357 -8.10558 -6.03722 -4.04374 1.31790 2.21348 2.23729 3.02818 3.35048 3.40935 3.42226 3.48704 3.93773 4.25526 4.29219 4.38395 4.41262 4.45432 4.85529 4.89171 4.97923 5.00042 5.07832 5.12624 5.27128 5.32914 5.37861 5.41264 5.51545 5.60665 5.82324 5.99975 6.03019 6.16342 6.27678 6.71042 6.79075 7.16480 7.50856 7.62450 7.87831 8.11543 8.22657 8.64258 9.09279 9.59943 11.08089 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.003159 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.973114 B = 8860.371791 C = 9945.999032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 C -0.165 4.165 4 N -0.453 5.453 5 C 0.186 3.814 6 N -0.435 5.435 7 C -0.044 4.044 8 C 0.553 3.447 9 O -0.524 6.524 10 O -0.320 6.320 11 C 0.073 3.927 12 C 0.063 3.937 13 O -0.389 6.389 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.041 3.959 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.211 0.789 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.263 0.737 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 13.306 -24.958 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.097 4.097 6 N -0.152 5.152 7 C -0.171 4.171 8 C 0.398 3.602 9 O -0.414 6.414 10 O -0.235 6.235 11 C -0.001 4.001 12 C -0.015 4.015 13 O -0.309 6.309 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.098 4.098 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.227 0.773 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.358 13.100 -24.286 27.596 hybrid contribution -0.531 -0.231 -0.254 0.633 sum -0.890 12.869 -24.540 27.724 Atomic orbital electron populations 1.22204 0.92675 1.03687 1.03752 1.21597 0.95912 0.94219 0.86010 1.22199 1.02381 0.93902 1.03762 1.45758 1.37594 1.21690 1.08516 1.25215 1.04108 1.02114 0.78310 1.70852 1.09379 1.02999 1.31959 1.19449 1.07976 0.99734 0.89965 1.19644 0.77129 0.82116 0.81325 1.90823 1.46893 1.45441 1.58224 1.86781 1.65601 1.48050 1.23023 1.23238 0.94153 0.87504 0.95155 1.22305 0.88638 1.00027 0.90529 1.87931 1.24798 1.92555 1.25618 1.20230 0.97864 0.95502 0.74442 1.21109 0.93511 1.48289 0.91970 0.91454 1.24947 0.98197 0.95387 0.96067 1.69979 1.32773 1.50435 1.00776 0.86278 0.83910 0.77747 0.78551 1.19467 1.20909 1.20847 1.22508 0.97406 0.90816 0.99069 0.91219 0.91408 0.90167 0.87810 0.91243 0.91500 0.90166 0.77253 0.90511 0.90449 0.92019 0.93167 0.97667 0.97471 0.92781 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 9.25 37.16 0.34 -0.26 16 2 C 0.12 0.55 3.56 -67.93 -0.24 0.31 16 3 C -0.16 -0.54 9.24 37.16 0.34 -0.19 16 4 N -0.45 -3.85 2.59 -111.24 -0.29 -4.14 16 5 C 0.19 1.98 11.52 -89.91 -1.04 0.94 16 6 N -0.43 -6.89 11.33 -11.05 -0.13 -7.02 16 7 C -0.04 -0.68 7.01 -83.11 -0.58 -1.26 16 8 C 0.55 9.95 7.95 34.36 0.27 10.22 16 9 O -0.52 -9.54 16.67 -19.30 -0.32 -9.86 16 10 O -0.32 -6.42 10.20 -43.52 -0.44 -6.86 16 11 C 0.07 1.31 5.86 37.16 0.22 1.53 16 12 C 0.06 1.26 6.33 37.16 0.24 1.49 16 13 O -0.39 -10.16 10.30 -38.79 -0.40 -10.56 16 14 C 0.19 5.59 5.69 36.01 0.20 5.79 16 15 C -0.51 -15.75 9.43 -34.44 -0.32 -16.07 16 16 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 17 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 19 Si 0.91 22.60 29.54 -169.99 -5.02 17.58 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.04 0.45 11.22 -16.63 -0.19 0.27 16 24 H 0.07 0.26 7.94 -51.93 -0.41 -0.15 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.10 0.32 8.07 -51.93 -0.42 -0.10 16 28 H 0.07 0.23 7.93 -51.93 -0.41 -0.18 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.21 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -37.93 345.36 -7.37 -45.30 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -5.86 Total: -6.96 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.85 Total: 4.29 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.32 Total: -38.13 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.17 Total: -27.28 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.93 -7.37 -45.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.025 kcal (2) G-P(sol) polarization free energy of solvation -37.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds