Wall clock time and date at job start Tue Mar 31 2020 05:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35861 * 126.12693 * 299.69624 * 4 2 1 6 6 N 1.30157 * 109.01902 * 179.81731 * 5 4 2 7 7 C 1.35796 * 108.85617 * 0.44141 * 6 5 4 8 8 C 1.47174 * 126.24337 * 179.72569 * 7 6 5 9 9 O 1.21545 * 120.00269 * 179.97438 * 8 7 6 10 10 O 1.34790 * 119.99856 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99799 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46958 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.47668 * 64.99885 * 12 11 10 14 14 C 1.42899 * 114.00300 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46999 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99438 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99608 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47380 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47580 * 119.99866 * 19 17 15 22 22 H 1.48501 * 109.47278 * 239.99985 * 19 17 15 23 23 C 1.35330 * 126.12356 * 119.99654 * 4 2 1 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08005 * 125.49096 * 359.97164 * 5 4 2 32 32 H 1.09004 * 109.46609 * 299.99247 * 11 10 8 33 33 H 1.08997 * 109.47424 * 59.99558 * 11 10 8 34 34 H 1.09003 * 109.46777 * 184.99928 * 12 11 10 35 35 H 1.08998 * 109.46919 * 304.99682 * 12 11 10 36 36 H 1.08996 * 109.46930 * 299.99781 * 14 13 12 37 37 H 1.08996 * 109.47070 * 59.99440 * 14 13 12 38 38 H 0.97003 * 119.99426 * 180.02562 * 18 17 15 39 39 H 1.07999 * 126.57142 * 359.96815 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7729 -0.3333 2.4837 6 7 2.3632 -1.1784 3.2783 7 6 3.0169 -2.1028 2.5285 8 6 3.8142 -3.2302 3.0376 9 8 4.3533 -3.9934 2.2603 10 8 3.9457 -3.4171 4.3660 11 6 4.7469 -4.5491 4.7963 12 6 4.7801 -4.5985 6.3252 13 8 3.4652 -4.8553 6.8223 14 6 3.3851 -4.9210 8.2475 15 6 1.9611 -5.1939 8.6585 16 1 1.1941 -5.3064 7.9066 17 6 1.6378 -5.3010 9.9946 18 7 2.5721 -5.1655 10.9101 19 14 -0.1271 -5.6400 10.5041 20 1 -0.9795 -5.7503 9.2931 21 1 -0.1861 -6.9115 11.2689 22 1 -0.6190 -4.5270 11.3553 23 6 2.7996 -1.7955 1.2164 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.1810 0.5139 2.7974 32 1 4.3090 -5.4707 4.4128 33 1 5.7619 -4.4423 4.4137 34 1 5.4524 -5.3934 6.6484 35 1 5.1346 -3.6431 6.7119 36 1 4.0285 -5.7223 8.6110 37 1 3.7105 -3.9721 8.6738 38 1 2.3446 -5.2413 11.8501 39 1 3.1781 -2.3317 0.3587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815243473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:57 Heat of formation + Delta-G solvation = -101.948137 kcal Electronic energy + Delta-G solvation = -21254.054751 eV Core-core repulsion = 17776.133643 eV Total energy + Delta-G solvation = -3477.921107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.33254 -41.16369 -38.73439 -37.37437 -36.97374 -34.95423 -32.27529 -31.76943 -30.70874 -29.02364 -28.18528 -25.54185 -24.53821 -24.08211 -23.31340 -21.59117 -21.24059 -18.71616 -18.61787 -18.21507 -17.92142 -17.18974 -17.11175 -16.52640 -16.30198 -16.11111 -15.53749 -15.14820 -15.12833 -14.86649 -14.39544 -14.18989 -13.90080 -13.68193 -13.26497 -13.15318 -13.10274 -12.90418 -12.72097 -12.46266 -12.38047 -12.15737 -12.05146 -11.77643 -11.71350 -11.27638 -11.15767 -10.90586 -10.84263 -10.27863 -9.79079 -8.33036 -6.45252 0.27344 1.26954 1.38885 1.41203 1.43253 1.56072 1.90148 2.28070 2.34713 3.00352 3.06631 3.35310 3.57296 3.76349 3.93154 3.94397 4.00336 4.10078 4.13377 4.26081 4.41219 4.50142 4.60642 4.67758 4.69705 4.83606 4.83989 4.84696 4.99968 5.16063 5.20229 5.27105 5.30455 5.44542 5.53663 5.94392 6.04147 6.49001 6.57858 6.78970 6.94697 7.26163 8.79711 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.003159 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.973114 B = 8860.371791 C = 9945.999032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 C -0.162 4.162 4 N -0.441 5.441 5 C 0.199 3.801 6 N -0.497 5.497 7 C -0.097 4.097 8 C 0.548 3.452 9 O -0.536 6.536 10 O -0.350 6.350 11 C 0.076 3.924 12 C 0.055 3.945 13 O -0.411 6.411 14 C 0.208 3.792 15 C -0.551 4.551 16 H 0.057 0.943 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.985 3.015 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.269 1.269 23 C 0.071 3.929 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.244 0.756 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.052 0.948 36 H -0.005 1.005 37 H -0.013 1.013 38 H 0.272 0.728 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 14.340 -26.691 30.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 C -0.219 4.219 4 N -0.121 5.121 5 C -0.086 4.086 6 N -0.215 5.215 7 C -0.222 4.222 8 C 0.395 3.605 9 O -0.428 6.428 10 O -0.266 6.266 11 C 0.003 3.997 12 C -0.022 4.022 13 O -0.331 6.331 14 C 0.133 3.867 15 C -0.588 4.588 16 H 0.075 0.925 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.808 3.192 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.194 1.194 23 C -0.071 4.071 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.260 0.740 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.013 0.987 37 H 0.005 0.995 38 H 0.081 0.919 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.729 14.154 -26.050 29.697 hybrid contribution -0.070 -0.447 0.167 0.482 sum -1.798 13.707 -25.883 29.344 Atomic orbital electron populations 1.22216 0.91828 1.03114 1.04937 1.22018 0.96493 0.94777 0.84743 1.22205 1.01725 0.93049 1.04944 1.46090 1.36071 1.20689 1.09300 1.25765 1.02588 1.01529 0.78675 1.70730 1.11611 1.04774 1.34430 1.19472 1.10499 1.00491 0.91757 1.20117 0.77194 0.82777 0.80420 1.90781 1.47814 1.46208 1.57986 1.86764 1.66390 1.48704 1.24724 1.23258 0.95861 0.87185 0.93401 1.22644 0.86486 1.00996 0.92065 1.87878 1.28575 1.92761 1.23876 1.19882 0.97015 0.93839 0.75973 1.21402 0.94239 1.50393 0.92780 0.92504 1.25972 1.03473 0.94174 0.95566 1.70071 1.35262 1.50014 1.01490 0.85113 0.77401 0.78443 0.78281 1.19175 1.19238 1.19399 1.22861 0.95633 0.90548 0.98053 0.91307 0.92820 0.87777 0.85806 0.91256 0.92497 0.87848 0.73988 0.90811 0.87040 0.89488 0.92997 0.98728 0.99535 0.91919 0.76607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 9.25 71.98 0.67 -0.05 16 2 C 0.12 0.68 3.56 44.99 0.16 0.84 16 3 C -0.16 -0.55 9.24 71.98 0.66 0.12 16 4 N -0.44 -6.64 2.59 -505.84 -1.31 -7.95 16 5 C 0.20 4.02 11.52 180.10 2.08 6.09 16 6 N -0.50 -16.11 11.33 -188.86 -2.14 -18.25 16 7 C -0.10 -3.06 7.01 40.47 0.28 -2.77 16 8 C 0.55 20.36 7.95 70.17 0.56 20.92 16 9 O -0.54 -19.80 16.67 19.69 0.33 -19.47 16 10 O -0.35 -14.62 10.20 -54.36 -0.55 -15.17 16 11 C 0.08 2.77 5.86 71.98 0.42 3.19 16 12 C 0.05 2.25 6.33 71.98 0.46 2.70 16 13 O -0.41 -22.26 10.30 -145.58 -1.50 -23.76 16 14 C 0.21 12.45 5.69 71.24 0.41 12.85 16 15 C -0.55 -34.88 9.43 25.60 0.24 -34.63 16 16 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 19 Si 0.99 46.29 29.54 68.60 2.03 48.32 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.07 1.48 11.22 83.75 0.94 2.42 16 24 H 0.07 0.33 7.94 -2.39 -0.02 0.31 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 27 H 0.12 0.28 8.07 -2.39 -0.02 0.26 16 28 H 0.07 0.26 7.93 -2.39 -0.02 0.24 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.24 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 33 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.22 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -85.17 345.36 5.50 -79.67 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.03 Total: 1.38 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.33 Total: 12.53 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -3.16 Total: -83.49 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -1.73 Total: -58.40 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -85.17 5.50 -79.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.277 kcal (2) G-P(sol) polarization free energy of solvation -85.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds