Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.20826 * 119.99939 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00046 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00018 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47109 * 180.02562 * 8 7 5 10 10 O 1.42901 * 109.47337 * 65.00104 * 9 8 7 11 11 C 1.42901 * 113.99917 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46859 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99895 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99818 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00057 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46638 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47212 * 119.99938 * 16 14 12 19 19 H 1.48496 * 109.47011 * 240.00102 * 16 14 12 20 20 N 1.46496 * 109.47017 * 240.00158 * 2 1 3 21 21 C 1.36889 * 126.39743 * 119.71350 * 20 2 1 22 22 C 1.34671 * 106.81568 * 179.83924 * 21 20 2 23 23 N 1.34123 * 108.02014 * 0.41833 * 22 21 20 24 24 C 1.30500 * 109.25931 * 359.73517 * 23 22 21 25 25 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 29 29 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 30 30 H 1.09001 * 109.47630 * 300.00318 * 8 7 5 31 31 H 1.08998 * 109.47321 * 60.00129 * 8 7 5 32 32 H 1.09008 * 109.47083 * 185.00303 * 9 8 7 33 33 H 1.09004 * 109.47076 * 304.99555 * 9 8 7 34 34 H 1.09002 * 109.47149 * 299.99791 * 11 10 9 35 35 H 1.08995 * 109.47355 * 59.99691 * 11 10 9 36 36 H 0.97004 * 120.00052 * 179.97438 * 15 14 12 37 37 H 1.08001 * 126.58723 * 359.97438 * 21 20 2 38 38 H 1.08002 * 125.98775 * 180.11867 * 22 21 20 39 39 H 1.07998 * 125.65146 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9831 -0.3899 3.6952 8 6 1.5650 0.4105 4.8322 9 6 2.0425 -0.2525 6.1257 10 8 3.4710 -0.2472 6.1646 11 6 4.0227 -0.8473 7.3383 12 6 5.5272 -0.7874 7.2732 13 1 6.0133 -0.3359 6.4210 14 6 6.2829 -1.3081 8.3021 15 7 5.6909 -1.8575 9.3401 16 14 8.1478 -1.2333 8.2219 17 1 8.5626 -0.5700 6.9597 18 1 8.6624 -0.4590 9.3797 19 1 8.7006 -2.6109 8.2626 20 7 2.0183 -0.6906 -1.1962 21 6 2.8040 -0.1537 -2.1802 22 6 3.0189 -1.1296 -3.0830 23 7 2.3743 -2.2295 -2.6664 24 6 1.7727 -1.9740 -1.5369 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1264 -0.7993 1.2056 29 1 1.6054 -1.7197 1.2951 30 1 1.9986 1.4075 4.7538 31 1 0.4778 0.4870 4.8426 32 1 1.6537 0.2992 6.9818 33 1 1.6818 -1.2804 6.1618 34 1 3.6751 -0.3083 8.2196 35 1 3.7032 -1.8875 7.3991 36 1 6.2226 -2.2242 10.0638 37 1 3.1809 0.8575 -2.2230 38 1 3.6035 -1.0405 -3.9867 39 1 1.1768 -2.6730 -0.9689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845285313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = -75.361014 kcal Electronic energy + Delta-G solvation = -21290.207288 eV Core-core repulsion = 17813.439085 eV Total energy + Delta-G solvation = -3476.768203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35819 -40.63684 -37.50085 -36.47822 -35.70349 -32.83225 -31.47422 -30.34088 -29.47497 -28.53204 -26.95608 -24.08466 -22.63964 -22.29001 -21.61823 -21.25512 -20.23100 -18.25201 -17.10757 -16.84476 -16.70894 -16.24468 -15.67375 -15.40793 -15.07260 -14.63994 -14.41560 -14.19991 -14.06706 -13.73519 -13.54025 -13.39951 -13.07022 -12.68775 -12.26140 -12.07032 -11.93216 -11.72328 -11.52301 -10.99982 -10.93244 -10.80786 -10.60258 -10.48894 -10.18033 -10.10755 -9.91388 -9.17540 -8.94920 -8.74548 -8.28060 -6.17044 -4.19025 1.79431 2.00579 2.18376 2.84159 2.98287 3.25756 3.32439 3.38679 3.94865 4.24489 4.27172 4.46550 4.48582 4.61450 4.63026 4.75814 4.95209 5.07216 5.08950 5.19814 5.20235 5.30573 5.34020 5.36616 5.48971 5.71778 5.75664 5.82809 5.97492 6.04112 6.41854 6.50855 6.92313 6.98368 7.33165 7.59395 7.72879 7.85923 8.06407 8.45032 8.93514 9.46146 10.94513 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002958 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.608585 B = 9462.932629 C =10553.883565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 H 0.112 0.888 4 C -0.129 4.129 5 C 0.470 3.530 6 O -0.514 6.514 7 O -0.337 6.337 8 C 0.075 3.925 9 C 0.060 3.940 10 O -0.391 6.391 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.455 5.455 21 C -0.054 4.054 22 C -0.032 4.032 23 N -0.496 5.496 24 C 0.183 3.817 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.443 3.526 -18.428 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.043 3.957 3 H 0.130 0.870 4 C -0.168 4.168 5 C 0.313 3.687 6 O -0.404 6.404 7 O -0.252 6.252 8 C 0.001 3.999 9 C -0.017 4.017 10 O -0.311 6.311 11 C 0.120 3.880 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.138 5.138 21 C -0.186 4.186 22 C -0.179 4.179 23 N -0.214 5.214 24 C -0.100 4.100 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.527 3.142 -18.673 22.168 hybrid contribution 0.785 0.742 0.905 1.410 sum -10.741 3.885 -17.768 21.123 Atomic orbital electron populations 1.22329 0.92213 1.03351 1.04781 1.21176 0.96323 0.97013 0.81207 0.87007 1.21682 1.05389 1.00708 0.88975 1.23089 0.76225 0.84014 0.85414 1.90640 1.37868 1.24510 1.87391 1.86600 1.71626 1.52278 1.14681 1.23276 0.99061 0.95035 0.82479 1.22333 0.86231 0.99726 0.93441 1.87915 1.15505 1.81928 1.45793 1.20252 0.94113 0.92039 0.81584 1.21077 0.90017 1.38733 1.05564 0.91469 1.24953 0.99599 0.95001 0.94939 1.69966 1.35860 1.39227 1.08690 0.86270 0.84125 0.77858 0.78198 1.19463 1.20804 1.20751 1.45709 1.38414 1.11490 1.18188 1.22799 1.02329 1.01364 0.92139 1.22314 1.04613 0.89499 1.01514 1.70313 1.12293 1.28180 1.10585 1.24931 1.03821 0.85347 0.95864 0.91501 0.91787 0.88561 0.86458 0.86677 0.90322 0.90234 0.91804 0.93128 0.97564 0.97456 0.92628 0.80901 0.81394 0.78119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 8.98 37.16 0.33 -0.89 16 2 C 0.15 1.14 2.70 -67.93 -0.18 0.96 16 3 H 0.11 0.89 7.90 -51.92 -0.41 0.48 16 4 C -0.13 -1.11 5.29 -27.88 -0.15 -1.26 16 5 C 0.47 5.63 7.68 36.01 0.28 5.90 16 6 O -0.51 -6.76 13.72 -18.75 -0.26 -7.02 16 7 O -0.34 -4.98 10.19 -42.02 -0.43 -5.41 16 8 C 0.07 1.08 5.84 37.16 0.22 1.29 16 9 C 0.06 1.04 6.33 37.16 0.24 1.28 16 10 O -0.39 -9.18 10.30 -38.80 -0.40 -9.58 16 11 C 0.19 5.20 5.69 36.01 0.20 5.41 16 12 C -0.52 -15.01 9.43 -34.44 -0.32 -15.33 16 13 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 16 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 N -0.45 -3.95 2.62 -111.46 -0.29 -4.24 16 21 C -0.05 -0.47 11.54 -16.56 -0.19 -0.66 16 22 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 23 N -0.50 -5.94 11.25 -14.67 -0.16 -6.10 16 24 C 0.18 1.74 11.65 -90.38 -1.05 0.69 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.39 7.95 -51.92 -0.41 -0.02 16 27 H 0.10 0.82 5.96 -51.93 -0.31 0.51 16 28 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.12 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.08 1.16 8.13 -51.93 -0.42 0.73 16 31 H 0.08 0.92 8.13 -51.93 -0.42 0.49 16 32 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -34.28 339.98 -7.39 -41.67 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.75 Total: -3.61 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.94 Total: -1.64 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.28 Total: -36.11 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.08 Total: -22.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.28 -7.39 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845285313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.687 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds