Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46953 * 179.97438 * 5 4 3 7 7 C 1.34233 * 125.74019 * 125.00033 * 6 5 4 8 8 C 1.38127 * 107.40638 * 179.97438 * 7 6 5 9 9 C 1.47285 * 126.42606 * 179.97438 * 8 7 6 10 10 O 1.21529 * 119.99717 * 359.97438 * 9 8 7 11 11 O 1.34753 * 120.00129 * 179.97438 * 9 8 7 12 12 C 1.45194 * 117.00096 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47432 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47468 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99989 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46757 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46710 * 120.00086 * 18 16 14 21 21 H 1.48491 * 109.47122 * 239.99981 * 18 16 14 22 22 C 1.41343 * 107.14685 * 359.97438 * 8 7 6 23 23 N 1.30435 * 108.01115 * 359.76149 * 22 8 7 24 24 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 25 25 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 26 26 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 33 33 H 1.08002 * 126.29572 * 359.96831 * 7 6 5 34 34 H 1.09003 * 109.47342 * 300.00292 * 12 11 9 35 35 H 1.09000 * 109.47487 * 59.99899 * 12 11 9 36 36 H 1.09003 * 109.46834 * 300.00283 * 13 12 11 37 37 H 1.09001 * 109.47591 * 59.99622 * 13 12 11 38 38 H 0.96998 * 120.00633 * 180.02562 * 17 16 14 39 39 H 1.08000 * 125.99104 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0025 7 6 6.4499 3.0277 -0.8892 8 6 7.7370 2.6761 -0.5319 9 6 8.9753 3.0668 -1.2271 10 8 8.9202 3.7666 -2.2192 11 8 10.1692 2.6484 -0.7632 12 6 11.3473 3.0714 -1.4989 13 6 12.5992 2.5027 -0.8279 14 6 13.8220 2.9423 -1.5912 15 1 13.7168 3.5647 -2.4674 16 6 15.0751 2.5499 -1.1707 17 7 15.2033 1.7915 -0.1039 18 14 16.5908 3.0942 -2.1172 19 1 16.1790 3.9346 -3.2701 20 1 17.4766 3.8817 -1.2225 21 1 17.3216 1.8995 -2.6108 22 6 7.6429 1.8711 0.6261 23 7 6.3812 1.7581 0.9372 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 3.8365 3.1234 -0.8886 32 1 3.8358 3.1229 0.8913 33 1 6.1651 3.6411 -1.7312 34 1 11.2867 2.7052 -2.5238 35 1 11.4006 4.1601 -1.5047 36 1 12.6600 2.8686 0.1971 37 1 12.5458 1.4140 -0.8224 38 1 16.0848 1.5157 0.1921 39 1 8.4707 1.4301 1.1615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859885807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = -69.448486 kcal Electronic energy + Delta-G solvation = -20605.153878 eV Core-core repulsion = 17128.642062 eV Total energy + Delta-G solvation = -3476.511817 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49115 -39.38498 -38.50197 -35.89199 -35.20398 -33.28375 -31.59315 -30.66365 -29.93988 -27.62692 -25.89313 -24.96513 -23.07644 -22.65643 -20.95576 -20.74817 -20.02142 -18.04647 -16.92061 -16.75748 -16.57542 -15.99753 -15.88892 -15.73095 -15.52175 -14.98330 -14.54530 -14.40473 -14.28539 -13.19215 -13.14480 -12.79229 -12.69286 -12.62267 -12.33028 -12.29703 -11.66253 -11.61309 -11.17945 -11.14457 -10.94054 -10.70730 -10.60817 -10.21508 -10.09400 -9.74940 -9.56890 -9.56447 -9.23450 -8.84143 -8.40315 -6.06409 -4.10307 1.34875 2.01854 2.12375 3.19834 3.30438 3.33658 3.38817 3.45236 3.47658 4.11994 4.41099 4.43731 4.46076 4.59328 4.61791 4.75311 4.80615 4.85978 4.88913 4.95218 5.17697 5.18657 5.30228 5.30893 5.49480 5.66994 5.78657 6.18015 6.19301 6.36932 6.55176 6.63573 6.71566 7.09196 7.40405 7.62535 7.68877 7.92281 8.26697 8.39531 8.95645 9.53841 11.05148 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.051984 B = 0.002189 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.495996 B =12788.824197 C =13031.710649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.136 3.864 6 N -0.364 5.364 7 C 0.130 3.870 8 C -0.271 4.271 9 C 0.537 3.463 10 O -0.531 6.531 11 O -0.352 6.352 12 C 0.078 3.922 13 C 0.023 3.977 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.107 3.893 23 N -0.300 5.300 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.190 0.810 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.233 0.275 1.250 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.015 3.985 6 N -0.142 5.142 7 C -0.021 4.021 8 C -0.284 4.284 9 C 0.382 3.618 10 O -0.423 6.423 11 O -0.268 6.268 12 C 0.005 3.995 13 C -0.014 4.014 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.081 4.081 23 N -0.119 5.119 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.207 0.793 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -29.961 -0.272 1.901 30.022 hybrid contribution 1.291 0.940 -1.168 1.978 sum -28.670 0.668 0.733 28.687 Atomic orbital electron populations 1.22769 0.80608 1.03060 1.00067 1.87897 1.20007 1.27544 1.95434 1.22379 0.93097 0.85212 1.00557 1.21762 0.93420 0.96436 1.05599 1.21634 0.73964 0.98309 1.04568 1.48453 1.06719 1.38415 1.20636 1.22932 0.89187 0.95682 0.94313 1.19517 0.91436 1.13769 1.03683 1.19943 0.83799 0.76650 0.81440 1.90789 1.88274 1.37045 1.26147 1.86561 1.15028 1.69340 1.55870 1.23616 0.81325 0.99332 0.95225 1.19179 0.87964 0.97392 0.96832 1.21032 0.90513 1.32401 1.12356 0.92200 1.24984 0.99162 0.94939 0.95120 1.69983 1.23596 1.35448 1.23812 0.86425 0.82584 0.78465 0.79894 1.19607 1.20880 1.20873 1.24350 0.94558 0.94970 0.94229 1.77218 1.03687 1.17859 1.13111 0.93907 0.93944 0.89409 0.92802 0.92934 0.89115 0.90183 0.88022 0.88972 0.79334 0.92353 0.92350 0.95300 0.95290 0.92808 0.78211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.16 10.70 -35.23 -0.38 -3.54 16 3 C 0.06 0.36 5.94 37.16 0.22 0.58 16 4 C -0.13 -0.92 5.76 -26.73 -0.15 -1.08 16 5 C 0.14 0.82 6.49 -4.05 -0.03 0.79 16 6 N -0.36 -3.76 3.65 -60.80 -0.22 -3.98 16 7 C 0.13 1.47 11.25 -16.54 -0.19 1.29 16 8 C -0.27 -4.01 6.13 -105.08 -0.64 -4.65 16 9 C 0.54 9.97 7.95 34.41 0.27 10.25 16 10 O -0.53 -10.87 16.69 -19.29 -0.32 -11.19 16 11 O -0.35 -7.27 10.07 -40.64 -0.41 -7.68 16 12 C 0.08 1.77 5.41 37.15 0.20 1.97 16 13 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.11 1.46 11.87 -16.96 -0.20 1.26 16 23 N -0.30 -3.87 12.33 30.87 0.38 -3.49 16 24 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.32 8.06 -51.93 -0.42 -0.10 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 39 H 0.20 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -34.62 347.24 -5.84 -40.46 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.88 Total: -5.09 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.90 Total: -33.29 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.11 Total: -22.41 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.62 -5.84 -40.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859885807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.987 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds