Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46953 * 179.97438 * 5 4 3 7 7 C 1.34233 * 125.74019 * 125.00033 * 6 5 4 8 8 C 1.38127 * 107.40638 * 179.97438 * 7 6 5 9 9 C 1.47285 * 126.42606 * 179.97438 * 8 7 6 10 10 O 1.21529 * 119.99717 * 359.97438 * 9 8 7 11 11 O 1.34753 * 120.00129 * 179.97438 * 9 8 7 12 12 C 1.45194 * 117.00096 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47432 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47468 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99989 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46757 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46710 * 120.00086 * 18 16 14 21 21 H 1.48491 * 109.47122 * 239.99981 * 18 16 14 22 22 C 1.41343 * 107.14685 * 359.97438 * 8 7 6 23 23 N 1.30435 * 108.01115 * 359.76149 * 22 8 7 24 24 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 25 25 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 26 26 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 33 33 H 1.08002 * 126.29572 * 359.96831 * 7 6 5 34 34 H 1.09003 * 109.47342 * 300.00292 * 12 11 9 35 35 H 1.09000 * 109.47487 * 59.99899 * 12 11 9 36 36 H 1.09003 * 109.46834 * 300.00283 * 13 12 11 37 37 H 1.09001 * 109.47591 * 59.99622 * 13 12 11 38 38 H 0.96998 * 120.00633 * 180.02562 * 17 16 14 39 39 H 1.08000 * 125.99104 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0025 7 6 6.4499 3.0277 -0.8892 8 6 7.7370 2.6761 -0.5319 9 6 8.9753 3.0668 -1.2271 10 8 8.9202 3.7666 -2.2192 11 8 10.1692 2.6484 -0.7632 12 6 11.3473 3.0714 -1.4989 13 6 12.5992 2.5027 -0.8279 14 6 13.8220 2.9423 -1.5912 15 1 13.7168 3.5647 -2.4674 16 6 15.0751 2.5499 -1.1707 17 7 15.2033 1.7915 -0.1039 18 14 16.5908 3.0942 -2.1172 19 1 16.1790 3.9346 -3.2701 20 1 17.4766 3.8817 -1.2225 21 1 17.3216 1.8995 -2.6108 22 6 7.6429 1.8711 0.6261 23 7 6.3812 1.7581 0.9372 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 3.8365 3.1234 -0.8886 32 1 3.8358 3.1229 0.8913 33 1 6.1651 3.6411 -1.7312 34 1 11.2867 2.7052 -2.5238 35 1 11.4006 4.1601 -1.5047 36 1 12.6600 2.8686 0.1971 37 1 12.5458 1.4140 -0.8224 38 1 16.0848 1.5157 0.1921 39 1 8.4707 1.4301 1.1615 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859885807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = -91.860148 kcal Electronic energy + Delta-G solvation = -20606.125721 eV Core-core repulsion = 17128.642062 eV Total energy + Delta-G solvation = -3477.483659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.48487 -40.89861 -38.97785 -37.51570 -35.87376 -35.39849 -32.52265 -32.22567 -31.31929 -28.19298 -27.16630 -26.19674 -24.41485 -23.28958 -22.77729 -21.66585 -21.29814 -19.20451 -18.46914 -17.66450 -17.48143 -17.34000 -17.21157 -16.80731 -16.44530 -16.32372 -15.67983 -15.31028 -15.06220 -14.79860 -14.48152 -14.33004 -13.92730 -13.35933 -13.25866 -13.08590 -12.99092 -12.74729 -12.59502 -12.57634 -12.33985 -12.08197 -11.97268 -11.69300 -11.45197 -11.41415 -11.25303 -10.66572 -10.63088 -10.59460 -9.88022 -8.24743 -6.37720 0.30877 0.99105 1.22034 1.42856 1.43401 1.57188 1.94004 2.17230 2.42925 2.76124 3.09602 3.47988 3.72229 3.85841 3.97765 3.99394 4.10647 4.20448 4.28239 4.32320 4.36288 4.44139 4.46299 4.55570 4.56012 4.61716 4.76372 4.87018 4.96757 5.09401 5.28731 5.35831 5.50724 5.59803 5.77197 5.78758 6.09534 6.22714 6.41472 6.75568 6.86600 7.31878 8.88104 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.051984 B = 0.002189 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.495996 B =12788.824197 C =13031.710649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.065 3.935 4 C -0.128 4.128 5 C 0.128 3.872 6 N -0.352 5.352 7 C 0.157 3.843 8 C -0.308 4.308 9 C 0.537 3.463 10 O -0.554 6.554 11 O -0.362 6.362 12 C 0.093 3.907 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.276 1.276 22 C 0.101 3.899 23 N -0.315 5.315 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.143 0.857 32 H 0.111 0.889 33 H 0.224 0.776 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.935 1.553 0.243 30.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.012 4.012 4 C -0.166 4.166 5 C 0.009 3.991 6 N -0.129 5.129 7 C 0.004 3.996 8 C -0.321 4.321 9 C 0.385 3.615 10 O -0.447 6.447 11 O -0.278 6.278 12 C 0.020 3.980 13 C -0.008 4.008 14 C -0.587 4.587 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.566 5.566 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.087 4.087 23 N -0.134 5.134 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.129 0.871 33 H 0.241 0.759 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -31.715 0.997 0.914 31.744 hybrid contribution 1.617 0.504 -0.801 1.874 sum -30.098 1.501 0.113 30.136 Atomic orbital electron populations 1.22918 0.79177 1.03703 1.01165 1.87846 1.21742 1.29175 1.95709 1.22463 0.91743 0.84675 1.02329 1.21659 0.94787 0.96572 1.03592 1.22120 0.71082 0.98286 1.07577 1.48845 1.08198 1.36619 1.19249 1.23377 0.87872 0.94135 0.94232 1.19426 0.91065 1.16560 1.05014 1.20476 0.83799 0.75968 0.81304 1.90762 1.88358 1.38305 1.27252 1.86545 1.15488 1.69855 1.55912 1.23139 0.81137 0.98965 0.94748 1.18995 0.89871 0.95963 0.95933 1.21419 0.91565 1.32830 1.12856 0.91617 1.25976 1.02675 0.94719 0.96027 1.70105 1.24752 1.36404 1.25352 0.85257 0.78050 0.78274 0.78595 1.18564 1.20082 1.20112 1.24424 0.95119 0.94993 0.94164 1.77193 1.03465 1.18586 1.14180 0.92884 0.92699 0.89174 0.91335 0.90712 0.91699 0.91657 0.83948 0.87060 0.75934 0.92234 0.92165 0.97450 0.97493 0.92384 0.78127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.36 10.70 -148.98 -1.59 -7.95 16 3 C 0.06 0.57 5.94 71.98 0.43 0.99 16 4 C -0.13 -1.53 5.76 30.60 0.18 -1.36 16 5 C 0.13 1.10 6.49 86.38 0.56 1.66 16 6 N -0.35 -6.44 3.65 -346.26 -1.26 -7.70 16 7 C 0.16 3.17 11.25 84.30 0.95 4.12 16 8 C -0.31 -8.91 6.13 -20.16 -0.12 -9.03 16 9 C 0.54 20.04 7.95 70.20 0.56 20.60 16 10 O -0.55 -22.47 16.69 19.74 0.33 -22.14 16 11 O -0.36 -15.35 10.07 -56.64 -0.57 -15.92 16 12 C 0.09 4.35 5.41 71.98 0.39 4.74 16 13 C 0.03 1.63 5.35 29.85 0.16 1.79 16 14 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 15 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 18 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.10 2.76 11.87 85.66 1.02 3.78 16 23 N -0.31 -7.88 12.33 -56.24 -0.69 -8.57 16 24 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.14 0.15 8.06 -2.39 -0.02 0.13 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.22 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.20 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -76.20 347.24 5.61 -70.59 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.03 Total: 3.33 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 6.06 Total: -1.93 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.67 Total: -72.17 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.84 Total: -46.01 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -76.20 5.61 -70.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859885807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.270 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds