Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46903 * 2 1 4 4 N 1.39932 * 125.74487 * 269.97317 * 3 2 1 5 5 C 1.30431 * 108.91517 * 180.02562 * 4 3 2 6 6 C 1.41334 * 108.01877 * 359.97438 * 5 4 3 7 7 C 1.47288 * 126.42982 * 179.97438 * 6 5 4 8 8 O 1.21527 * 120.00119 * 180.02562 * 7 6 5 9 9 O 1.34757 * 119.99787 * 0.02669 * 7 6 5 10 10 C 1.45195 * 116.99703 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46873 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47213 * 65.00089 * 11 10 9 13 13 C 1.42904 * 114.00233 * 180.02562 * 12 11 10 14 14 C 1.50689 * 109.47196 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00541 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99894 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00281 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00024 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47197 * 89.99596 * 18 16 14 20 20 H 1.48507 * 109.47201 * 209.99744 * 18 16 14 21 21 H 1.48500 * 109.47129 * 329.99309 * 18 16 14 22 22 C 1.34231 * 125.74268 * 90.00119 * 3 2 1 23 23 C 1.50696 * 126.29226 * 0.23993 * 22 3 2 24 24 H 1.09000 * 109.47519 * 300.00309 * 1 2 3 25 25 H 1.09012 * 109.46968 * 59.99887 * 1 2 3 26 26 H 1.08998 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47271 * 240.00367 * 2 1 3 28 28 H 1.08995 * 109.46874 * 120.00001 * 2 1 3 29 29 H 1.08009 * 125.98590 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47352 * 299.99891 * 10 9 7 31 31 H 1.08997 * 109.47705 * 59.99906 * 10 9 7 32 32 H 1.09002 * 109.47046 * 184.99784 * 11 10 9 33 33 H 1.09005 * 109.46828 * 304.99553 * 11 10 9 34 34 H 1.09006 * 109.46417 * 299.99877 * 13 12 11 35 35 H 1.08997 * 109.46829 * 59.99180 * 13 12 11 36 36 H 0.96999 * 120.00178 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.47149 * 269.71404 * 23 22 3 38 38 H 1.09001 * 109.47680 * 29.71290 * 23 22 3 39 39 H 1.09005 * 109.47158 * 149.71511 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2912 2.1518 -1.1357 5 6 2.7077 3.3287 -0.7581 6 6 2.7166 3.3567 0.6549 7 6 3.1181 4.4907 1.5048 8 8 3.0807 4.3862 2.7150 9 8 3.5269 5.6440 0.9404 10 6 3.9080 6.7188 1.8391 11 6 4.3407 7.9378 1.0218 12 8 3.2230 8.4388 0.2858 13 6 3.5211 9.5836 -0.5160 14 6 2.2777 10.0242 -1.2445 15 1 1.3522 9.4844 -1.1085 16 6 2.3212 11.1172 -2.0838 17 7 1.2359 11.5021 -2.7192 18 14 3.9217 12.0513 -2.3186 19 1 4.6770 11.4620 -3.4532 20 1 3.6247 13.4771 -2.6089 21 1 4.7358 11.9577 -1.0801 22 6 2.2796 2.1205 1.0895 23 6 2.1296 1.6806 2.5230 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9945 4.1400 -1.4109 30 1 3.0583 6.9854 2.4677 31 1 4.7360 6.3907 2.4675 32 1 4.7105 8.7128 1.6932 33 1 5.1317 7.6489 0.3296 34 1 3.8742 10.3928 0.1232 35 1 4.2948 9.3285 -1.2401 36 1 1.2667 12.2708 -3.3100 37 1 1.1249 1.9184 2.8727 38 1 2.2933 0.6052 2.5921 39 1 2.8619 2.2001 3.1410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869847695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = -61.991403 kcal Electronic energy + Delta-G solvation = -21509.072095 eV Core-core repulsion = 18032.883642 eV Total energy + Delta-G solvation = -3476.188453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66843 -39.76432 -37.10852 -35.93141 -34.96503 -32.66469 -32.42494 -30.61113 -29.74325 -27.82194 -27.35887 -24.50867 -23.22733 -22.05602 -21.80619 -20.75910 -19.61728 -17.87131 -16.96029 -16.57474 -16.38452 -16.05020 -15.65654 -15.15167 -14.88893 -14.76356 -14.34402 -14.11274 -13.45187 -13.41409 -13.35533 -12.96124 -12.71421 -12.61556 -12.47704 -12.35945 -12.30477 -11.75714 -11.66163 -11.12796 -10.99559 -10.81910 -10.60515 -10.36830 -10.19219 -9.84842 -9.61094 -9.17575 -8.87168 -8.84218 -8.47621 -6.09612 -4.08743 1.23101 2.01807 2.05042 2.97366 3.25996 3.26309 3.33095 3.34033 4.13771 4.26262 4.36872 4.50934 4.54173 4.61912 4.76099 4.79948 5.01784 5.11845 5.21465 5.22407 5.24129 5.31322 5.43008 5.46111 5.56819 5.66523 5.72834 5.76519 5.89058 6.06727 6.33545 6.58887 6.59045 6.70902 6.99879 7.40011 7.60252 7.98232 8.04720 8.66611 9.02442 9.49252 11.03448 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.003223 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.148757 B = 8684.342649 C = 9455.117189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.360 5.360 4 N -0.301 5.301 5 C 0.111 3.889 6 C -0.283 4.283 7 C 0.545 3.455 8 O -0.529 6.529 9 O -0.337 6.337 10 C 0.077 3.923 11 C 0.057 3.943 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.162 3.838 23 C -0.101 4.101 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.202 0.798 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.001 0.999 36 H 0.266 0.734 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -23.695 9.264 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.139 5.139 4 N -0.119 5.119 5 C -0.077 4.077 6 C -0.295 4.295 7 C 0.392 3.608 8 O -0.421 6.421 9 O -0.252 6.252 10 C 0.004 3.996 11 C -0.020 4.020 12 O -0.294 6.294 13 C 0.093 3.907 14 C -0.557 4.557 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C 0.030 3.970 23 C -0.159 4.159 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.218 0.782 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.018 0.982 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.549 -24.533 8.456 26.191 hybrid contribution 1.208 1.355 0.446 1.869 sum 4.756 -23.179 8.903 25.281 Atomic orbital electron populations 1.22200 0.93757 1.03348 1.03708 1.21794 0.95672 0.77367 1.04807 1.48613 1.49568 1.12351 1.03405 1.77278 1.22927 1.04697 1.06974 1.24319 0.94410 0.95132 0.93829 1.19081 1.22490 0.94388 0.93580 1.19893 0.73303 0.81778 0.85872 1.90758 1.52863 1.83144 1.15304 1.86628 1.75992 1.21801 1.40809 1.23137 1.00813 0.84143 0.91554 1.22408 0.91212 0.93011 0.95394 1.87985 1.31914 1.48068 1.61429 1.20627 0.97716 0.83028 0.89318 1.20889 0.96219 1.13349 1.25210 0.89905 1.24772 0.96496 0.96611 0.95107 1.69879 1.27718 1.26605 1.29175 0.86846 0.84131 0.79594 0.79135 1.19886 1.20811 1.19099 1.21455 0.93847 0.90453 0.91289 1.20725 1.05249 1.01632 0.88284 0.91792 0.91223 0.90189 0.88151 0.88624 0.78170 0.90374 0.90363 0.91876 0.93040 0.97887 0.98165 0.92365 0.89258 0.90962 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.12 0.79 6.93 -4.04 -0.03 0.76 16 3 N -0.36 -3.90 3.58 -56.59 -0.20 -4.10 16 4 N -0.30 -4.06 12.50 30.87 0.39 -3.68 16 5 C 0.11 1.55 11.87 -16.97 -0.20 1.35 16 6 C -0.28 -4.03 6.13 -105.08 -0.64 -4.68 16 7 C 0.55 8.73 7.95 34.41 0.27 9.01 16 8 O -0.53 -8.78 14.64 -19.29 -0.28 -9.06 16 9 O -0.34 -5.77 10.04 -43.43 -0.44 -6.21 16 10 C 0.08 1.21 5.85 37.16 0.22 1.43 16 11 C 0.06 1.00 6.33 37.16 0.24 1.23 16 12 O -0.37 -8.85 10.30 -38.80 -0.40 -9.25 16 13 C 0.17 4.29 4.76 36.00 0.17 4.46 16 14 C -0.52 -15.60 9.99 -34.44 -0.34 -15.94 16 15 H 0.08 2.74 8.06 -52.49 -0.42 2.31 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 18 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 C 0.16 1.88 7.01 -81.59 -0.57 1.31 16 23 C -0.10 -0.84 9.56 36.00 0.34 -0.49 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.36 7.01 -51.93 -0.36 -0.01 16 29 H 0.20 2.57 8.06 -52.48 -0.42 2.15 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 35 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 36 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.38 7.04 -51.93 -0.37 0.01 16 39 H 0.11 1.04 6.51 -51.93 -0.34 0.70 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -35.82 338.34 -5.65 -41.46 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.65 Total: -3.81 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.26 Total: -0.14 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.96 Total: -34.85 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -1.12 Total: -24.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.82 -5.65 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869847695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.527 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds