Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99856 * 2 1 4 4 C 1.52998 * 109.47193 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47092 * 67.38452 * 4 3 2 6 6 C 1.46900 * 111.00095 * 54.56005 * 5 4 3 7 7 C 1.50697 * 109.46736 * 66.04608 * 6 5 4 8 8 H 1.08002 * 120.00573 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00098 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00267 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99594 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.46935 * 90.00300 * 11 9 7 13 13 H 1.48499 * 109.47105 * 209.99988 * 11 9 7 14 14 H 1.48504 * 109.47139 * 330.00070 * 11 9 7 15 15 C 1.46903 * 111.00081 * 290.60590 * 5 4 3 16 16 C 1.50703 * 109.47317 * 285.97022 * 15 5 4 17 17 C 1.38145 * 120.38479 * 98.13455 * 16 15 5 18 18 N 1.31904 * 120.79251 * 179.72341 * 17 16 15 19 19 C 1.32062 * 121.69098 * 0.02562 * 18 17 16 20 20 F 1.35106 * 119.64876 * 180.02562 * 19 18 17 21 21 C 1.38517 * 120.70210 * 359.97438 * 19 18 17 22 22 C 1.50690 * 120.43327 * 179.97438 * 21 19 18 23 23 C 1.38552 * 119.13367 * 0.02562 * 21 19 18 24 24 H 1.09004 * 109.47370 * 59.99926 * 1 2 3 25 25 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47106 * 299.99930 * 1 2 3 27 27 H 1.09004 * 109.46728 * 59.99763 * 3 2 1 28 28 H 1.08997 * 109.47321 * 300.00140 * 3 2 1 29 29 H 1.09005 * 109.46582 * 307.38652 * 4 3 2 30 30 H 1.08992 * 109.47196 * 187.39034 * 4 3 2 31 31 H 1.09004 * 109.46928 * 186.04082 * 6 5 4 32 32 H 1.08993 * 109.46884 * 306.04720 * 6 5 4 33 33 H 0.96999 * 119.99938 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.47136 * 165.97225 * 15 5 4 35 35 H 1.09000 * 109.46931 * 45.97222 * 15 5 4 36 36 H 1.07997 * 119.60612 * 359.75502 * 17 16 15 37 37 H 1.08999 * 109.47284 * 90.00154 * 22 21 19 38 38 H 1.09003 * 109.47509 * 210.00455 * 22 21 19 39 39 H 1.09008 * 109.47182 * 330.00241 * 22 21 19 40 40 H 1.08001 * 120.76962 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9810 0.6154 -1.2794 6 6 3.4664 1.3973 -2.4115 7 6 4.0853 2.7712 -2.3957 8 1 4.7907 3.0369 -1.6223 9 6 3.7510 3.6892 -3.3687 10 7 4.2914 4.8880 -3.3552 11 14 2.5314 3.2294 -4.7069 12 1 1.1565 3.5716 -4.2624 13 1 2.8517 3.9799 -5.9476 14 1 2.6166 1.7712 -4.9746 15 6 3.5888 -0.7957 -1.3925 16 6 4.4674 -1.6345 -0.5005 17 6 4.0272 -2.0204 0.7507 18 7 4.7874 -2.7590 1.5359 19 6 5.9902 -3.1566 1.1628 20 9 6.7338 -3.9127 2.0000 21 6 6.4972 -2.8075 -0.0781 22 6 7.8707 -3.2640 -0.4974 23 6 5.7254 -2.0323 -0.9283 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8486 0.5338 0.8157 30 1 3.9781 2.1719 0.1315 31 1 3.7203 0.8951 -3.3451 32 1 2.3831 1.4857 -2.3294 33 1 4.0565 5.5337 -4.0400 34 1 3.7027 -1.1228 -2.4261 35 1 2.5483 -0.9091 -1.0882 36 1 3.0487 -1.7142 1.0900 37 1 7.7949 -4.2259 -1.0044 38 1 8.3068 -2.5297 -1.1747 39 1 8.5042 -3.3667 0.3838 40 1 6.0944 -1.7452 -1.9019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891937554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = -40.937457 kcal Electronic energy + Delta-G solvation = -22656.075383 eV Core-core repulsion = 19193.172687 eV Total energy + Delta-G solvation = -3462.902696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.88978 -40.15371 -38.40698 -36.13598 -33.71180 -32.88444 -31.90463 -29.28119 -27.79523 -27.26988 -26.31995 -24.47707 -23.36532 -22.74024 -21.09438 -19.53194 -17.88188 -17.35528 -16.83896 -16.25080 -16.20728 -16.00412 -15.27358 -14.49643 -14.44361 -14.23005 -14.06999 -13.86855 -13.61226 -13.42346 -12.91614 -12.66178 -12.61162 -12.39665 -12.17760 -11.95676 -11.66546 -11.62385 -11.42949 -11.20928 -10.76684 -10.69353 -10.30877 -9.94771 -9.55576 -9.51749 -9.39105 -9.18101 -8.64744 -8.57018 -7.36011 -6.12255 -4.09995 1.04139 1.28738 3.20332 3.29978 3.30860 3.67923 3.71852 3.97687 4.34490 4.59017 4.75281 4.89265 4.94662 5.13058 5.20185 5.36446 5.41015 5.43155 5.49798 5.52211 5.67006 5.70517 5.72768 5.79632 5.82719 5.90393 6.04115 6.12189 6.15426 6.33401 6.55430 6.58447 6.79135 6.84802 6.89869 7.34556 7.52540 7.77006 7.83607 7.95253 8.58023 8.96661 9.49274 11.00743 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.005040 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.513336 B = 5553.710963 C = 6519.724561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.018 3.982 4 C 0.068 3.932 5 N -0.516 5.516 6 C 0.158 3.842 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.872 3.128 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.070 3.930 16 C -0.111 4.111 17 C 0.133 3.867 18 N -0.514 5.514 19 C 0.286 3.714 20 F -0.120 7.120 21 C -0.161 4.161 22 C -0.108 4.108 23 C -0.033 4.033 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.028 0.972 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -13.949 5.309 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C -0.060 4.060 4 C -0.060 4.060 5 N -0.239 5.239 6 C 0.032 3.968 7 C -0.548 4.548 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.191 1.191 15 C -0.058 4.058 16 C -0.114 4.114 17 C -0.024 4.024 18 N -0.228 5.228 19 C 0.132 3.868 20 F -0.099 7.099 21 C -0.165 4.165 22 C -0.165 4.165 23 C -0.059 4.059 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.046 0.954 32 H 0.010 0.990 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.185 0.815 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.630 -14.183 6.030 15.498 hybrid contribution -1.334 0.326 -1.343 1.921 sum -2.964 -13.857 4.687 14.926 Atomic orbital electron populations 1.22712 0.82404 1.02013 0.99844 1.87837 1.18878 1.28968 1.95009 1.23559 0.96887 0.84294 1.01241 1.22200 0.89611 1.01765 0.92454 1.62122 1.59125 0.99720 1.02920 1.20295 0.93370 0.94307 0.88801 1.21021 1.26190 0.94357 1.13241 0.90136 1.24884 0.96022 0.94842 0.97423 1.69885 1.43703 1.05169 1.34979 0.86922 0.81852 0.79069 0.82258 1.20433 1.21133 1.19124 1.21479 0.97800 0.89063 0.97464 1.21025 0.95821 0.98115 0.96409 1.22559 0.98504 0.91839 0.89449 1.67006 1.04747 1.13821 1.37202 1.17968 0.88411 0.93697 0.86681 1.91562 1.73989 1.72909 1.71463 1.20611 0.99406 1.02332 0.94117 1.20668 0.91771 1.01753 1.02319 1.21379 0.92365 0.92632 0.99560 0.94320 0.90202 0.94424 0.93689 0.91161 0.91833 0.88241 0.95410 0.99022 0.92624 0.90892 0.89529 0.81480 0.90881 0.90541 0.91155 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.63 6.93 -35.23 -0.24 -5.88 16 3 C 0.02 0.29 5.72 37.16 0.21 0.50 16 4 C 0.07 1.21 5.54 -3.83 -0.02 1.19 16 5 N -0.52 -9.88 4.63 -237.52 -1.10 -10.98 16 6 C 0.16 3.52 3.44 -4.98 -0.02 3.50 16 7 C -0.51 -13.53 9.14 -34.44 -0.31 -13.85 16 8 H 0.08 2.35 7.34 -52.49 -0.39 1.96 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 11 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 15 C 0.07 1.12 4.98 -4.97 -0.02 1.09 16 16 C -0.11 -1.65 4.93 -104.48 -0.52 -2.16 16 17 C 0.13 1.97 9.68 -17.55 -0.17 1.80 16 18 N -0.51 -8.21 10.37 -13.59 -0.14 -8.35 16 19 C 0.29 4.30 8.36 -17.35 -0.15 4.16 16 20 F -0.12 -1.75 16.51 2.25 0.04 -1.72 16 21 C -0.16 -2.15 5.90 -104.41 -0.62 -2.77 16 22 C -0.11 -1.10 9.86 36.00 0.35 -0.75 16 23 C -0.03 -0.46 9.57 -39.30 -0.38 -0.84 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.30 5.79 -51.93 -0.30 1.00 16 29 H 0.06 1.05 6.45 -51.93 -0.33 0.71 16 30 H 0.10 1.94 7.02 -51.93 -0.36 1.58 16 31 H 0.03 0.64 6.90 -51.93 -0.36 0.28 16 32 H -0.01 -0.17 5.14 -51.93 -0.27 -0.44 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 35 H 0.09 1.36 4.46 -51.94 -0.23 1.13 16 36 H 0.17 2.31 7.54 -52.49 -0.40 1.91 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.07 0.69 7.66 -51.92 -0.40 0.29 16 40 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -29.46 325.46 -6.62 -36.08 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.56 Total: 0.68 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.62 Total: -4.86 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.47 Total: -45.03 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.24 Total: -5.88 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.46 -6.62 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.853 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds