Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 N 1.46497 * 109.47123 * 89.99701 * 6 5 4 8 8 C 1.39669 * 120.00085 * 179.97438 * 7 6 5 9 9 C 1.38912 * 120.07529 * 359.72832 * 8 7 6 10 10 C 1.38101 * 119.92518 * 179.76768 * 9 8 7 11 11 C 1.38293 * 120.07507 * 0.50335 * 10 9 8 12 12 C 1.50695 * 119.92468 * 179.72129 * 11 10 9 13 13 C 1.50702 * 109.47481 * 270.02312 * 12 11 10 14 14 H 1.08003 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99932 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99515 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46978 * 89.99894 * 17 15 13 19 19 H 1.48495 * 109.46805 * 210.00134 * 17 15 13 20 20 H 1.48503 * 109.46797 * 329.99842 * 17 15 13 21 21 C 1.38288 * 120.14976 * 359.75139 * 11 10 9 22 22 C 1.38101 * 120.07207 * 359.97438 * 21 11 10 23 23 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 24 24 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 26 26 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 27 27 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 28 28 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 31 31 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 32 32 H 0.97003 * 120.00009 * 0.02562 * 7 6 5 33 33 H 1.08000 * 120.03776 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.96674 * 180.25275 * 10 9 8 35 35 H 1.09001 * 109.47488 * 30.02523 * 12 11 10 36 36 H 1.09005 * 109.46861 * 150.02333 * 12 11 10 37 37 H 0.97008 * 119.99890 * 180.02562 * 16 15 13 38 38 H 1.07997 * 119.96382 * 180.02562 * 21 11 10 39 39 H 1.08004 * 120.04008 * 179.97438 * 22 21 11 40 40 H 1.08008 * 119.61503 * 180.25015 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 7 6.2249 -0.1227 1.3698 8 6 7.5976 -0.1826 1.6201 9 6 8.4970 -0.2253 0.5623 10 6 9.8539 -0.2797 0.8134 11 6 10.3173 -0.3021 2.1162 12 6 11.7983 -0.3678 2.3863 13 6 12.2297 -1.8091 2.4736 14 1 11.5040 -2.5987 2.3459 15 6 13.5509 -2.1198 2.7167 16 7 13.9274 -3.3776 2.7923 17 14 14.8060 -0.7542 2.9384 18 1 14.8870 -0.3847 4.3744 19 1 16.1355 -1.2234 2.4722 20 1 14.3932 0.4312 2.1448 21 6 9.4245 -0.2650 3.1717 22 6 8.0665 -0.2049 2.9276 23 6 3.4766 -1.1948 0.0014 24 7 2.1587 -1.1463 0.0005 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5137 28 1 1.6508 2.1373 0.0004 29 1 4.1366 2.1139 0.0001 30 1 6.0553 -1.0025 -0.5265 31 1 6.1316 0.7758 -0.5230 32 1 5.5976 -0.0977 2.1093 33 1 8.1356 -0.2127 -0.4553 34 1 10.5539 -0.3088 -0.0085 35 1 12.3375 0.1244 1.5769 36 1 12.0185 0.1351 3.3281 37 1 14.8568 -3.5962 2.9637 38 1 9.7896 -0.2823 4.1879 39 1 7.3697 -0.1764 3.7523 40 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922550688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = 50.906119 kcal Electronic energy + Delta-G solvation = -19973.339217 eV Core-core repulsion = 16945.188382 eV Total energy + Delta-G solvation = -3028.150835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68328 -38.92358 -36.12943 -33.72994 -32.67077 -32.60478 -30.72852 -30.25322 -28.82415 -26.57519 -25.00213 -23.83369 -22.51499 -22.26699 -21.26013 -19.93758 -17.26174 -17.01334 -16.69584 -16.47971 -15.86915 -15.08328 -14.85950 -14.60507 -14.06092 -13.95916 -13.67072 -13.57379 -13.39281 -12.97280 -12.78925 -12.70395 -12.58941 -12.35225 -12.20676 -11.75003 -11.55013 -11.38189 -10.61208 -10.25212 -10.22809 -10.11179 -9.90522 -9.78429 -9.43268 -9.21420 -9.09857 -8.52575 -8.28592 -6.80384 -6.01450 -3.99373 0.65934 0.91963 2.07365 2.29704 3.28024 3.32327 3.39831 3.43364 3.80769 3.94206 4.34820 4.40313 4.46668 4.54242 4.59505 4.65086 4.97769 5.14920 5.17811 5.24111 5.30388 5.39670 5.47933 5.49572 5.53850 5.63496 5.74425 5.95104 5.96001 6.06306 6.23326 6.32736 6.36309 6.63416 6.77891 7.07163 7.10008 7.18598 7.38346 7.63704 7.73098 7.74314 7.80357 7.98543 8.58119 9.05373 9.59658 11.11680 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.050088 B = 0.002510 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.876635 B =11154.899595 C =11301.469542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.128 3.872 3 C -0.176 4.176 4 C -0.054 4.054 5 C -0.159 4.159 6 C 0.177 3.823 7 N -0.754 5.754 8 C 0.184 3.816 9 C -0.194 4.194 10 C -0.078 4.078 11 C -0.080 4.080 12 C 0.019 3.981 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.077 4.077 22 C -0.191 4.191 23 C 0.123 3.877 24 N -0.487 5.487 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.394 0.606 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 10.777 -6.185 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.010 4.010 3 C -0.196 4.196 4 C -0.080 4.080 5 C -0.162 4.162 6 C 0.052 3.948 7 N -0.387 5.387 8 C 0.085 3.915 9 C -0.216 4.216 10 C -0.096 4.096 11 C -0.081 4.081 12 C -0.018 4.018 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.096 4.096 22 C -0.213 4.213 23 C -0.034 4.034 24 N -0.196 5.196 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.228 0.772 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.813 9.882 -6.368 27.457 hybrid contribution 1.051 1.292 0.413 1.716 sum -23.762 11.174 -5.955 26.925 Atomic orbital electron populations 1.20733 0.88799 1.03564 1.03157 1.21388 0.97164 0.88454 0.93974 1.21973 0.94805 0.99352 1.03421 1.21577 0.94308 0.98047 0.94093 1.20951 0.96961 0.94400 1.03870 1.19960 0.87575 1.02013 0.85280 1.44406 1.03637 1.85073 1.05597 1.17605 0.82918 0.97413 0.93609 1.20497 0.93151 1.11084 0.96865 1.20820 0.94103 0.97893 0.96822 1.20060 0.97381 0.98405 0.92283 1.18710 0.88245 0.98216 0.96620 1.21017 0.94537 0.90444 1.48701 0.90894 1.25028 0.98329 0.95315 0.94835 1.69911 1.17216 1.17040 1.49971 0.86800 0.80879 0.82944 0.78851 1.20263 1.21379 1.18943 1.20805 0.91793 0.97917 0.99067 1.20453 0.95887 1.10934 0.94028 1.22771 0.89067 0.98265 0.93326 1.67591 1.09825 1.29332 1.12842 0.90316 0.90366 0.90670 0.84717 0.84580 0.91397 0.91661 0.77221 0.87179 0.86509 0.95771 0.96218 0.92738 0.86476 0.87306 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.17 36.01 0.37 -0.25 16 2 C 0.13 1.12 6.78 -82.59 -0.56 0.56 16 3 C -0.18 -1.32 9.74 -39.44 -0.38 -1.71 16 4 C -0.05 -0.43 9.86 -39.27 -0.39 -0.82 16 5 C -0.16 -1.45 5.27 -104.48 -0.55 -2.00 16 6 C 0.18 1.75 5.06 -5.20 -0.03 1.72 16 7 N -0.75 -9.00 5.72 -59.81 -0.34 -9.35 16 8 C 0.18 2.85 6.65 -83.79 -0.56 2.29 16 9 C -0.19 -3.18 9.31 -39.38 -0.37 -3.55 16 10 C -0.08 -1.50 9.69 -39.61 -0.38 -1.88 16 11 C -0.08 -1.70 5.07 -104.59 -0.53 -2.24 16 12 C 0.02 0.47 4.17 -29.04 -0.12 0.35 16 13 C -0.51 -14.66 9.65 -34.44 -0.33 -15.00 16 14 H 0.07 2.31 7.98 -52.48 -0.42 1.89 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 17 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 21 C -0.08 -1.49 9.69 -39.61 -0.38 -1.88 16 22 C -0.19 -3.16 9.90 -39.38 -0.39 -3.55 16 23 C 0.12 1.22 10.86 -17.55 -0.19 1.03 16 24 N -0.49 -5.22 10.27 -9.47 -0.10 -5.32 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 29 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.07 0.68 7.89 -51.93 -0.41 0.27 16 31 H 0.07 0.62 7.91 -51.93 -0.41 0.21 16 32 H 0.39 4.31 8.48 -40.82 -0.35 3.97 16 33 H 0.11 1.54 6.73 -52.49 -0.35 1.18 16 34 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 35 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 36 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -32.59 340.20 -9.77 -42.36 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.67 Total: 2.48 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -4.90 Total: -25.08 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.33 Total: -41.88 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.59 -9.77 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922550688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.266 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds