Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 N 1.46497 * 109.47123 * 89.99701 * 6 5 4 8 8 C 1.39669 * 120.00085 * 179.97438 * 7 6 5 9 9 C 1.38912 * 120.07529 * 359.72832 * 8 7 6 10 10 C 1.38101 * 119.92518 * 179.76768 * 9 8 7 11 11 C 1.38293 * 120.07507 * 0.50335 * 10 9 8 12 12 C 1.50695 * 119.92468 * 179.72129 * 11 10 9 13 13 C 1.50702 * 109.47481 * 270.02312 * 12 11 10 14 14 H 1.08003 * 120.00028 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99932 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99515 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46978 * 89.99894 * 17 15 13 19 19 H 1.48495 * 109.46805 * 210.00134 * 17 15 13 20 20 H 1.48503 * 109.46797 * 329.99842 * 17 15 13 21 21 C 1.38288 * 120.14976 * 359.75139 * 11 10 9 22 22 C 1.38101 * 120.07207 * 359.97438 * 21 11 10 23 23 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 24 24 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 26 26 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 27 27 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 28 28 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 31 31 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 32 32 H 0.97003 * 120.00009 * 0.02562 * 7 6 5 33 33 H 1.08000 * 120.03776 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.96674 * 180.25275 * 10 9 8 35 35 H 1.09001 * 109.47488 * 30.02523 * 12 11 10 36 36 H 1.09005 * 109.46861 * 150.02333 * 12 11 10 37 37 H 0.97008 * 119.99890 * 180.02562 * 16 15 13 38 38 H 1.07997 * 119.96382 * 180.02562 * 21 11 10 39 39 H 1.08004 * 120.04008 * 179.97438 * 22 21 11 40 40 H 1.08008 * 119.61503 * 180.25015 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 7 6.2249 -0.1227 1.3698 8 6 7.5976 -0.1826 1.6201 9 6 8.4970 -0.2253 0.5623 10 6 9.8539 -0.2797 0.8134 11 6 10.3173 -0.3021 2.1162 12 6 11.7983 -0.3678 2.3863 13 6 12.2297 -1.8091 2.4736 14 1 11.5040 -2.5987 2.3459 15 6 13.5509 -2.1198 2.7167 16 7 13.9274 -3.3776 2.7923 17 14 14.8060 -0.7542 2.9384 18 1 14.8870 -0.3847 4.3744 19 1 16.1355 -1.2234 2.4722 20 1 14.3932 0.4312 2.1448 21 6 9.4245 -0.2650 3.1717 22 6 8.0665 -0.2049 2.9276 23 6 3.4766 -1.1948 0.0014 24 7 2.1587 -1.1463 0.0005 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5137 28 1 1.6508 2.1373 0.0004 29 1 4.1366 2.1139 0.0001 30 1 6.0553 -1.0025 -0.5265 31 1 6.1316 0.7758 -0.5230 32 1 5.5976 -0.0977 2.1093 33 1 8.1356 -0.2127 -0.4553 34 1 10.5539 -0.3088 -0.0085 35 1 12.3375 0.1244 1.5769 36 1 12.0185 0.1351 3.3281 37 1 14.8568 -3.5962 2.9637 38 1 9.7896 -0.2823 4.1879 39 1 7.3697 -0.1764 3.7523 40 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922550688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = 31.628268 kcal Electronic energy + Delta-G solvation = -19974.175168 eV Core-core repulsion = 16945.188382 eV Total energy + Delta-G solvation = -3028.986785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34820 -40.23654 -37.23997 -35.21290 -34.10898 -33.27782 -32.21438 -31.66109 -29.81464 -27.96479 -25.97879 -24.50167 -24.23755 -23.39350 -22.20692 -21.42190 -18.92155 -18.34927 -17.69527 -17.31626 -16.78826 -16.49011 -15.91289 -15.72370 -15.41579 -14.92411 -14.88268 -14.79352 -14.38327 -14.13840 -14.07839 -13.75364 -13.62850 -13.40319 -13.25000 -13.09921 -12.96705 -12.47727 -12.40464 -11.98719 -11.72610 -11.61743 -11.47979 -10.82811 -10.75697 -10.63937 -10.40571 -9.85919 -9.67918 -8.27422 -8.07300 -6.30519 0.00777 0.29369 0.67800 0.87677 1.37649 1.39556 1.52075 2.38054 2.48304 2.94356 3.07524 3.13567 3.33873 3.70440 3.80595 3.98939 4.00156 4.12040 4.24185 4.37896 4.45711 4.58229 4.69794 4.71131 4.73274 4.76659 4.78347 4.85305 4.98130 5.12450 5.14684 5.16653 5.17834 5.31063 5.35036 5.52387 5.62095 5.69773 5.74231 6.03547 6.17101 6.32279 6.54590 6.76249 6.88605 6.99791 7.32602 8.90133 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.050088 B = 0.002510 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.876635 B =11154.899595 C =11301.469542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.114 3.886 3 C -0.173 4.173 4 C -0.055 4.055 5 C -0.162 4.162 6 C 0.177 3.823 7 N -0.741 5.741 8 C 0.199 3.801 9 C -0.194 4.194 10 C -0.089 4.089 11 C -0.123 4.123 12 C 0.027 3.973 13 C -0.515 4.515 14 H 0.025 0.975 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.246 1.246 21 C -0.089 4.089 22 C -0.193 4.193 23 C 0.108 3.892 24 N -0.517 5.517 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.292 13.479 -6.627 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.024 4.024 3 C -0.192 4.192 4 C -0.081 4.081 5 C -0.165 4.165 6 C 0.053 3.947 7 N -0.373 5.373 8 C 0.097 3.903 9 C -0.216 4.216 10 C -0.108 4.108 11 C -0.124 4.124 12 C -0.010 4.010 13 C -0.554 4.554 14 H 0.043 0.957 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.108 4.108 22 C -0.215 4.215 23 C -0.049 4.049 24 N -0.227 5.227 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.181 0.819 29 H 0.172 0.828 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -26.678 12.595 -6.821 30.280 hybrid contribution 1.363 0.394 0.500 1.504 sum -25.315 12.989 -6.321 29.146 Atomic orbital electron populations 1.20814 0.87066 1.04284 1.03951 1.21922 0.98536 0.88485 0.93437 1.22293 0.94775 1.00052 1.02080 1.21853 0.94806 0.98238 0.93225 1.20812 0.96214 0.94692 1.04732 1.20057 0.88236 1.02549 0.83905 1.44481 1.02235 1.83480 1.07084 1.17679 0.84431 0.95135 0.93014 1.20696 0.92040 1.10341 0.98547 1.20901 0.95615 0.98288 0.95949 1.19929 0.95996 1.02533 0.93980 1.18544 0.90814 0.94962 0.96725 1.21261 0.93899 0.91954 1.48239 0.95658 1.26039 1.00810 0.98132 0.94423 1.70075 1.17985 1.19652 1.51545 0.85617 0.77506 0.79753 0.79544 1.19052 1.20870 1.16963 1.20875 0.92995 0.98411 0.98503 1.20662 0.95113 1.10270 0.95489 1.22867 0.89230 0.98796 0.93984 1.67593 1.10270 1.30746 1.14045 0.89392 0.91161 0.88447 0.81877 0.82752 0.91377 0.90456 0.76327 0.84475 0.86711 0.95577 0.95769 0.92498 0.86752 0.84718 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.17 71.24 0.72 -0.27 16 2 C 0.11 1.77 6.78 42.55 0.29 2.06 16 3 C -0.17 -2.07 9.74 22.36 0.22 -1.85 16 4 C -0.06 -0.72 9.86 22.47 0.22 -0.49 16 5 C -0.16 -2.58 5.27 -19.77 -0.10 -2.69 16 6 C 0.18 3.01 5.06 85.63 0.43 3.45 16 7 N -0.74 -15.61 5.72 -343.14 -1.96 -17.57 16 8 C 0.20 5.75 6.65 38.22 0.25 6.01 16 9 C -0.19 -6.05 9.31 22.40 0.21 -5.84 16 10 C -0.09 -3.42 9.69 22.25 0.22 -3.20 16 11 C -0.12 -5.33 5.07 -19.84 -0.10 -5.43 16 12 C 0.03 1.32 4.17 29.10 0.12 1.45 16 13 C -0.52 -30.87 9.65 25.60 0.25 -30.62 16 14 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 15 C 0.00 0.14 5.47 84.66 0.46 0.60 16 16 N -0.95 -61.02 13.96 21.45 0.30 -60.73 16 17 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 21 C -0.09 -3.45 9.69 22.25 0.22 -3.24 16 22 C -0.19 -6.10 9.90 22.40 0.22 -5.88 16 23 C 0.11 2.03 10.86 84.67 0.92 2.95 16 24 N -0.52 -10.56 10.27 -183.89 -1.89 -12.45 16 25 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.48 8.08 -2.39 -0.02 0.46 16 28 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 29 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.07 1.20 7.89 -2.39 -0.02 1.19 16 31 H 0.08 1.20 7.91 -2.39 -0.02 1.18 16 32 H 0.40 7.59 8.48 -92.71 -0.79 6.80 16 33 H 0.14 3.46 6.73 -2.91 -0.02 3.44 16 34 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.03 1.25 7.14 -2.39 -0.02 1.24 16 36 H 0.02 1.15 7.51 -2.38 -0.02 1.13 16 37 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 38 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -73.02 340.20 3.07 -69.95 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.19 Total: 16.90 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 4.55 Total: -43.01 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.55 Total: -90.75 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -73.02 3.07 -69.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922550688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.579 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds