Wall clock time and date at job start Tue Mar 31 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99702 * 2 1 4 4 H 1.48499 * 109.47190 * 274.98149 * 3 2 1 5 5 H 1.48506 * 109.47197 * 34.98099 * 3 2 1 6 6 H 1.48496 * 109.47137 * 154.97720 * 3 2 1 7 7 C 1.38801 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00194 * 171.61955 * 7 2 1 9 9 N 1.36933 * 120.00220 * 351.61460 * 7 2 1 10 10 C 1.48150 * 127.84004 * 163.74292 * 9 7 2 11 11 C 1.54390 * 104.61820 * 140.41787 * 10 9 7 12 12 H 1.08999 * 118.18640 * 244.20631 * 11 10 9 13 13 C 1.54289 * 104.95887 * 23.86556 * 11 10 9 14 14 H 1.08999 * 121.82055 * 222.17024 * 13 11 10 15 15 C 1.51826 * 127.61212 * 344.08543 * 9 7 2 16 16 C 1.53005 * 118.12290 * 87.19012 * 11 10 9 17 17 H 1.08997 * 117.40400 * 16.12863 * 16 11 10 18 18 N 1.46496 * 117.44369 * 160.80967 * 16 11 10 19 19 C 1.34770 * 120.00319 * 224.24674 * 18 16 11 20 20 O 1.21287 * 119.99580 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00222 * 179.72544 * 19 18 16 22 22 F 1.39904 * 110.01729 * 54.29709 * 21 19 18 23 23 C 1.54265 * 110.03273 * 292.90216 * 21 19 18 24 24 C 1.54958 * 104.16166 * 217.13834 * 23 21 19 25 25 C 1.54892 * 102.78060 * 37.88427 * 24 23 21 26 26 C 1.53872 * 110.03264 * 175.68403 * 21 19 18 27 27 H 0.96998 * 119.99948 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.40686 * 21.63696 * 10 9 7 29 29 H 1.08998 * 110.41091 * 259.20189 * 10 9 7 30 30 H 1.09005 * 111.95934 * 100.91255 * 15 9 7 31 31 H 1.09007 * 110.52816 * 337.32091 * 15 9 7 32 32 H 0.97008 * 119.99852 * 44.24184 * 18 16 11 33 33 H 1.09000 * 110.48768 * 335.78558 * 23 21 19 34 34 H 1.09001 * 110.48670 * 98.42416 * 23 21 19 35 35 H 1.09001 * 110.72176 * 279.57342 * 24 23 21 36 36 H 1.09004 * 110.76604 * 156.22634 * 24 23 21 37 37 H 1.08999 * 110.48853 * 203.40571 * 25 24 23 38 38 H 1.09001 * 110.48237 * 80.76267 * 25 24 23 39 39 H 1.09004 * 110.03557 * 238.56599 * 26 21 19 40 40 H 1.09004 * 110.03393 * 359.95497 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4122 0.5922 7 6 2.0103 -1.2020 -0.0005 8 1 3.0817 -1.2070 -0.1369 9 7 1.3367 -2.3817 0.1719 10 6 1.8158 -3.7529 -0.1199 11 6 1.2804 -4.6094 1.0477 12 1 2.0027 -5.0768 1.7168 13 6 0.0590 -3.8336 1.5833 14 1 -0.1285 -3.7232 2.6513 15 6 -0.0738 -2.5748 0.6994 16 6 -0.1250 -5.2014 0.9226 17 1 -0.5735 -5.2233 -0.0706 18 7 -0.4615 -6.3314 1.7920 19 6 -1.1133 -7.3982 1.2887 20 8 -1.4217 -7.4225 0.1159 21 6 -1.4539 -8.5634 2.1817 22 9 -2.1680 -8.1175 3.2991 23 6 -0.1637 -9.2801 2.6304 24 6 -0.5487 -10.7810 2.6434 25 6 -1.4711 -10.9089 1.4057 26 6 -2.2851 -9.5984 1.4036 27 1 -0.4850 0.8400 -0.0004 28 1 2.9053 -3.7783 -0.1414 29 1 1.4078 -4.1045 -1.0675 30 1 -0.7894 -2.7484 -0.1043 31 1 -0.3774 -1.7181 1.3013 32 1 -0.2150 -6.3118 2.7301 33 1 0.6409 -9.0990 1.9178 34 1 0.1279 -8.9516 3.6280 35 1 -1.0896 -11.0326 3.5557 36 1 0.3360 -11.4080 2.5323 37 1 -2.1327 -11.7688 1.5100 38 1 -0.8780 -10.9909 0.4948 39 1 -3.2445 -9.7541 1.8971 40 1 -2.4429 -9.2576 0.3803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960684150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:11 Heat of formation + Delta-G solvation = -31.300494 kcal Electronic energy + Delta-G solvation = -22230.047632 eV Core-core repulsion = 18767.562826 eV Total energy + Delta-G solvation = -3462.484806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.09148 -40.03811 -38.50209 -37.00153 -34.48624 -32.69833 -30.37321 -29.17312 -28.88718 -27.16907 -25.65821 -23.08012 -21.46007 -21.13547 -20.52266 -19.73665 -19.23483 -18.04892 -16.93947 -16.68015 -16.14556 -15.65053 -15.10538 -14.69187 -14.56001 -14.43100 -13.77653 -13.67541 -13.46901 -13.22889 -12.77085 -12.24682 -12.21027 -11.88424 -11.62679 -11.56398 -11.53116 -11.43409 -11.15513 -11.00932 -10.89438 -10.84329 -10.47161 -10.25355 -10.16450 -9.81703 -9.68839 -9.23466 -8.76968 -8.42274 -6.88113 -5.80131 -3.13921 2.32527 2.86072 3.38039 3.43545 3.45636 3.87290 3.97914 4.22407 4.27766 4.38464 4.46565 4.83651 4.91411 5.03819 5.09972 5.10976 5.22789 5.30896 5.34393 5.41874 5.53327 5.53673 5.67303 5.74625 5.78168 5.85724 5.89864 5.97599 6.07967 6.17303 6.49174 6.66376 6.70384 6.86193 7.27893 7.40234 7.49976 7.68545 8.03403 8.13492 9.05154 9.71862 10.48660 11.35071 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.047096 B = 0.003192 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.385137 B = 8770.926542 C = 8871.454339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.180 4.180 12 H 0.104 0.896 13 C -0.176 4.176 14 H 0.103 0.897 15 C 0.186 3.814 16 C 0.090 3.910 17 H 0.133 0.867 18 N -0.685 5.685 19 C 0.505 3.495 20 O -0.521 6.521 21 C 0.102 3.898 22 F -0.193 7.193 23 C -0.142 4.142 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.143 4.143 27 H 0.254 0.746 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.402 0.598 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -20.832 7.085 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.032 3.968 11 C -0.202 4.202 12 H 0.122 0.878 13 C -0.197 4.197 14 H 0.121 0.879 15 C 0.061 3.939 16 C -0.015 4.015 17 H 0.150 0.850 18 N -0.333 5.333 19 C 0.288 3.712 20 O -0.396 6.396 21 C 0.080 3.920 22 F -0.173 7.173 23 C -0.180 4.180 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.181 4.181 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.123 -20.532 6.235 21.563 hybrid contribution 0.502 0.975 0.747 1.327 sum -1.621 -19.557 6.982 20.829 Atomic orbital electron populations 1.69886 1.05059 1.25410 1.55889 1.24895 0.95649 0.97940 1.01834 0.86101 0.78730 0.83347 0.77560 1.21512 1.21588 1.20543 1.19010 0.90629 0.82335 1.43454 0.90548 1.46058 1.12540 0.99960 1.73704 1.21062 0.97146 0.85826 0.92805 1.24395 0.90344 1.02183 1.03265 0.87844 1.24605 1.02231 0.92509 1.00366 0.87908 1.21693 0.86483 0.91833 0.93856 1.21961 0.98851 0.84764 0.95940 0.84952 1.45357 1.57344 1.17495 1.13094 1.20624 0.78225 0.83438 0.88885 1.90708 1.52904 1.79324 1.16686 1.21859 0.93502 0.93335 0.83293 1.92916 1.79872 1.90771 1.53753 1.23007 0.95413 0.96341 1.03262 1.22536 0.99924 0.94808 0.98799 1.22357 0.98177 0.96859 0.98576 1.22759 0.98665 0.93570 1.03147 0.93550 0.92935 0.95602 0.94895 0.89052 0.76388 0.89261 0.89323 0.90782 0.90526 0.90749 0.90830 0.89767 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.87 55.49 0.60 -26.22 16 2 C -0.01 -0.17 5.42 -17.43 -0.09 -0.27 16 3 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.30 10.36 -15.07 -0.16 -6.45 16 8 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 9 N -0.60 -15.32 3.45 -165.70 -0.57 -15.89 16 10 C 0.16 3.34 7.05 -2.41 -0.02 3.32 16 11 C -0.18 -3.18 7.06 -89.21 -0.63 -3.81 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 13 C -0.18 -3.31 6.96 -89.21 -0.62 -3.93 16 14 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 15 C 0.19 4.45 5.90 -0.29 0.00 4.45 16 16 C 0.09 1.53 5.97 -67.93 -0.41 1.12 16 17 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 18 N -0.69 -9.47 5.56 -53.80 -0.30 -9.77 16 19 C 0.50 7.19 6.70 -10.99 -0.07 7.11 16 20 O -0.52 -9.13 14.79 5.55 0.08 -9.05 16 21 C 0.10 1.12 1.48 -90.66 -0.13 0.99 16 22 F -0.19 -2.30 16.78 2.25 0.04 -2.27 16 23 C -0.14 -1.19 6.14 -25.04 -0.15 -1.34 16 24 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16 25 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 26 C -0.14 -1.43 6.25 -25.61 -0.16 -1.59 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 2.42 6.64 -51.92 -0.34 2.08 16 32 H 0.40 4.58 8.83 -40.82 -0.36 4.22 16 33 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.77 8.02 -51.93 -0.42 0.35 16 40 H 0.10 1.23 6.40 -51.93 -0.33 0.89 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -31.38 328.03 -9.04 -40.42 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.02 Total: 3.47 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.79 Total: -2.51 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.27 Total: -51.89 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.38 -9.04 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960684150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.116 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds