Wall clock time and date at job start Tue Mar 31 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99653 * 2 1 4 4 H 1.48493 * 109.47418 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46957 * 120.00482 * 3 2 1 6 6 H 1.48496 * 109.47590 * 240.00029 * 3 2 1 7 7 C 1.38811 * 120.00115 * 180.28142 * 2 1 3 8 8 H 1.07996 * 119.99736 * 208.44372 * 7 2 1 9 9 N 1.36936 * 120.00309 * 28.44809 * 7 2 1 10 10 C 1.47425 * 125.64754 * 19.18399 * 9 7 2 11 11 C 1.55129 * 104.72388 * 155.82069 * 10 9 7 12 12 C 1.55161 * 101.48184 * 37.29428 * 11 10 9 13 13 H 1.08993 * 110.71514 * 205.96884 * 12 11 10 14 14 N 1.46502 * 110.87222 * 82.76955 * 12 11 10 15 15 C 1.34770 * 120.00149 * 159.93282 * 14 12 11 16 16 O 1.21609 * 119.99830 * 359.97438 * 15 14 12 17 17 C 1.47287 * 120.00494 * 180.02562 * 15 14 12 18 18 F 1.35104 * 119.99556 * 359.97438 * 17 15 14 19 19 C 1.33115 * 120.00869 * 179.97438 * 17 15 14 20 20 C 1.51448 * 126.33593 * 359.68996 * 19 17 15 21 21 C 1.54279 * 106.85380 * 180.23863 * 20 19 17 22 22 C 1.54983 * 103.65575 * 23.48543 * 21 20 19 23 23 C 1.51841 * 126.34706 * 179.97438 * 19 17 15 24 24 C 1.47015 * 125.65041 * 199.49623 * 9 7 2 25 25 H 0.97002 * 119.99472 * 185.65980 * 1 2 3 26 26 H 1.09007 * 110.36577 * 274.75060 * 10 9 7 27 27 H 1.09002 * 110.36795 * 37.06696 * 10 9 7 28 28 H 1.09002 * 111.18735 * 279.19145 * 11 10 9 29 29 H 1.09002 * 110.93538 * 155.28657 * 11 10 9 30 30 H 0.96999 * 119.99868 * 339.93262 * 14 12 11 31 31 H 1.09000 * 109.98704 * 299.72554 * 20 19 17 32 32 H 1.09004 * 109.98548 * 61.02498 * 20 19 17 33 33 H 1.08992 * 110.79765 * 264.85600 * 21 20 19 34 34 H 1.09005 * 110.55623 * 141.98858 * 21 20 19 35 35 H 1.09004 * 110.83033 * 204.49468 * 22 21 20 36 36 H 1.09000 * 111.01086 * 80.98993 * 22 21 20 37 37 H 1.09005 * 110.44189 * 274.92513 * 23 19 17 38 38 H 1.08992 * 110.44280 * 37.45036 * 23 19 17 39 39 H 1.09005 * 109.88112 * 300.43830 * 24 9 7 40 40 H 1.09002 * 109.88578 * 61.59898 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2124 7 6 2.0103 -1.2021 -0.0059 8 1 2.9925 -1.2607 0.4393 9 7 1.4497 -2.3137 -0.5763 10 6 0.3396 -2.3145 -1.5464 11 6 0.4961 -3.6480 -2.3235 12 6 0.9626 -4.6086 -1.1978 13 1 1.5422 -5.4340 -1.6110 14 7 -0.1816 -5.1124 -0.4342 15 6 -0.0601 -6.2368 0.2989 16 8 0.9992 -6.8334 0.3260 17 6 -1.2106 -6.7436 1.0662 18 9 -2.3876 -6.0811 1.0356 19 6 -1.0908 -7.8545 1.7898 20 6 0.1519 -8.7101 1.9215 21 6 -0.2091 -9.8821 2.8575 22 6 -1.7504 -9.9876 2.7341 23 6 -2.1764 -8.5018 2.6313 24 6 1.8509 -3.7042 -0.3178 25 1 -0.4849 -0.8360 0.0829 26 1 -0.6182 -2.2857 -1.0268 27 1 0.4291 -1.4670 -2.2260 28 1 1.2530 -3.5630 -3.1033 29 1 -0.4579 -3.9696 -2.7412 30 1 -1.0267 -4.6367 -0.4561 31 1 0.4484 -9.0894 0.9436 32 1 0.9626 -8.1251 2.3559 33 1 0.0786 -9.6596 3.8850 34 1 0.2661 -10.8028 2.5188 35 1 -2.1794 -10.4531 3.6215 36 1 -2.0339 -10.5356 1.8355 37 1 -2.2130 -8.0467 3.6211 38 1 -3.1436 -8.4165 2.1361 39 1 2.8990 -3.8430 -0.5830 40 1 1.6976 -3.9449 0.7342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010565401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:05 Heat of formation + Delta-G solvation = -76.525439 kcal Electronic energy + Delta-G solvation = -22419.565943 eV Core-core repulsion = 18955.120037 eV Total energy + Delta-G solvation = -3464.445907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.95056 -41.19639 -39.48741 -38.57283 -35.74774 -33.80783 -32.37776 -30.98243 -29.82880 -29.30263 -26.77950 -26.07324 -23.06362 -22.20238 -21.74776 -21.47520 -20.14555 -19.57808 -18.95189 -17.67013 -17.27457 -17.04849 -16.53306 -16.21649 -15.84405 -15.82239 -15.49073 -15.25083 -14.90097 -14.53868 -14.28381 -13.91608 -13.63961 -13.54089 -13.25705 -12.66195 -12.65520 -12.58629 -12.51634 -12.34536 -12.07244 -12.03356 -11.99647 -11.89900 -11.62451 -11.51229 -11.05462 -10.55324 -10.38867 -9.90698 -9.05977 -8.37329 -5.40206 -0.00057 1.56196 1.63835 1.79729 1.83656 1.92866 2.61292 3.02955 3.14208 3.24123 3.46762 3.57629 3.65421 3.86399 3.95835 4.11019 4.11963 4.25404 4.40992 4.41374 4.47050 4.59821 4.72518 4.77501 4.81038 4.86642 4.87790 4.97684 5.00182 5.02631 5.10558 5.18125 5.20677 5.32646 5.40778 5.42444 5.63882 6.27273 6.30829 6.84508 6.90376 7.65213 8.23336 8.93443 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.003710 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.429005 B = 7544.958230 C = 7642.874539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.073 4.073 3 Si 1.118 2.882 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.355 4.355 8 H 0.053 0.947 9 N -0.621 5.621 10 C 0.143 3.857 11 C -0.121 4.121 12 C 0.146 3.854 13 H 0.111 0.889 14 N -0.704 5.704 15 C 0.547 3.453 16 O -0.547 6.547 17 C -0.037 4.037 18 F -0.140 7.140 19 C -0.061 4.061 20 C -0.083 4.083 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.099 4.099 24 C 0.125 3.875 25 H 0.254 0.746 26 H 0.010 0.990 27 H 0.027 0.973 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.408 0.592 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -20.450 1.595 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.270 4.270 3 Si 0.941 3.059 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.483 4.483 8 H 0.071 0.929 9 N -0.349 5.349 10 C 0.018 3.982 11 C -0.159 4.159 12 C 0.041 3.959 13 H 0.129 0.871 14 N -0.353 5.353 15 C 0.334 3.666 16 O -0.427 6.427 17 C -0.059 4.059 18 F -0.119 7.119 19 C -0.064 4.064 20 C -0.120 4.120 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.135 4.135 24 C -0.001 4.001 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.243 0.757 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -4.283 -19.117 1.565 19.653 hybrid contribution -0.398 -0.724 0.288 0.875 sum -4.682 -19.841 1.852 20.470 Atomic orbital electron populations 1.70914 1.07490 1.29306 1.50171 1.27216 0.96526 1.04467 0.98760 0.82831 0.73877 0.71836 0.77327 1.21420 1.20311 1.20449 1.19979 0.99523 0.89913 1.38914 0.92912 1.44829 1.40686 1.01123 1.48237 1.21564 0.90065 0.96234 0.90332 1.23083 1.03622 0.92999 0.96234 1.21848 0.86888 0.95885 0.91290 0.87122 1.45863 1.15596 1.25864 1.48016 1.18447 0.87812 0.80889 0.79413 1.90776 1.28356 1.59056 1.64542 1.18742 0.82359 0.96824 1.08021 1.91464 1.44327 1.80340 1.95772 1.23475 1.00485 0.91165 0.91281 1.21217 0.93637 0.95689 1.01419 1.22480 0.96510 0.97474 0.99525 1.22544 0.95177 0.93798 1.03675 1.21679 0.95961 0.96646 0.99241 1.21815 0.97081 0.85136 0.96109 0.93555 0.97272 0.95469 0.88245 0.87722 0.75692 0.89894 0.90987 0.90377 0.89491 0.88547 0.90409 0.88143 0.89567 0.94668 0.98084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 13.00 21.65 0.28 -57.81 16 2 C -0.07 -4.28 5.09 84.86 0.43 -3.85 16 3 Si 1.12 52.04 30.00 68.60 2.06 54.10 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.35 -20.96 10.00 84.03 0.84 -20.12 16 8 H 0.05 3.14 7.97 -2.91 -0.02 3.12 16 9 N -0.62 -32.72 3.26 -691.56 -2.26 -34.97 16 10 C 0.14 6.60 5.36 86.93 0.47 7.07 16 11 C -0.12 -3.98 6.66 32.06 0.21 -3.76 16 12 C 0.15 5.10 3.24 46.18 0.15 5.25 16 13 H 0.11 3.56 7.69 -2.39 -0.02 3.54 16 14 N -0.70 -23.42 5.11 -440.33 -2.25 -25.67 16 15 C 0.55 18.17 7.77 86.62 0.67 18.84 16 16 O -0.55 -19.92 13.84 -4.06 -0.06 -19.97 16 17 C -0.04 -1.07 7.42 23.50 0.17 -0.90 16 18 F -0.14 -4.04 16.52 44.97 0.74 -3.29 16 19 C -0.06 -1.43 6.16 -17.00 -0.10 -1.53 16 20 C -0.08 -1.79 4.81 30.52 0.15 -1.64 16 21 C -0.12 -1.70 6.88 31.71 0.22 -1.48 16 22 C -0.11 -1.34 6.94 31.93 0.22 -1.12 16 23 C -0.10 -1.60 6.45 30.87 0.20 -1.40 16 24 C 0.12 5.63 6.98 86.73 0.61 6.23 16 25 H 0.25 16.00 6.19 -92.71 -0.57 15.43 16 26 H 0.01 0.47 6.81 -2.38 -0.02 0.45 16 27 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 28 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.41 13.01 8.17 -92.71 -0.76 12.25 16 31 H 0.08 1.93 7.67 -2.39 -0.02 1.91 16 32 H 0.07 1.84 7.68 -2.38 -0.02 1.82 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.00 0.06 8.04 -2.39 -0.02 0.04 16 Total: -1.00 -71.44 328.42 3.23 -68.21 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.48 Total: 17.82 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 4.24 Total: 1.59 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.23 Total: -118.45 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.74 Total: -3.29 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 2.06 Total: 54.10 kcal Total: -71.44 3.23 -68.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010565401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.317 kcal (2) G-P(sol) polarization free energy of solvation -71.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds