Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48505 * 109.46995 * 239.99852 * 3 2 1 5 5 H 1.48501 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47389 * 120.00110 * 3 2 1 7 7 C 1.38807 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00047 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00145 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.64204 * 31.86027 * 10 9 7 12 12 C 1.55154 * 110.72021 * 155.00143 * 10 9 7 13 13 C 1.54908 * 101.58289 * 153.86481 * 12 10 9 14 14 N 1.47425 * 104.92961 * 322.93718 * 13 12 10 15 15 C 1.34774 * 125.65138 * 204.15299 * 14 13 12 16 16 O 1.21606 * 120.00377 * 180.02562 * 15 14 13 17 17 C 1.47300 * 119.99877 * 0.02637 * 15 14 13 18 18 F 1.35101 * 119.99969 * 359.97438 * 17 15 14 19 19 C 1.33108 * 120.00096 * 179.97438 * 17 15 14 20 20 C 1.51449 * 126.34190 * 359.68900 * 19 17 15 21 21 C 1.54275 * 106.85233 * 180.24417 * 20 19 17 22 22 C 1.54978 * 103.66441 * 23.47999 * 21 20 19 23 23 C 1.51847 * 126.34368 * 180.02562 * 19 17 15 24 24 C 1.47290 * 108.55742 * 24.15407 * 14 13 12 25 25 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99732 * 0.02562 * 9 7 2 27 27 H 1.09008 * 111.00345 * 35.78951 * 12 10 9 28 28 H 1.08999 * 111.00564 * 271.94283 * 12 10 9 29 29 H 1.09002 * 110.36632 * 81.83114 * 13 12 10 30 30 H 1.08995 * 110.36781 * 204.04351 * 13 12 10 31 31 H 1.09001 * 109.98258 * 299.72536 * 20 19 17 32 32 H 1.09004 * 109.98558 * 61.03011 * 20 19 17 33 33 H 1.09007 * 110.79012 * 264.85820 * 21 20 19 34 34 H 1.08997 * 110.55869 * 141.99779 * 21 20 19 35 35 H 1.09000 * 110.83555 * 204.49693 * 22 21 20 36 36 H 1.09003 * 111.00282 * 80.98977 * 22 21 20 37 37 H 1.08997 * 110.43633 * 274.92748 * 23 19 17 38 38 H 1.09005 * 110.44018 * 37.44819 * 23 19 17 39 39 H 1.09004 * 109.85762 * 239.50064 * 24 14 13 40 40 H 1.08995 * 110.00297 * 118.43011 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0005 -3.5563 0.5378 12 6 1.1936 -4.7898 0.6127 13 6 1.7911 -6.0433 -0.0739 14 7 2.1101 -5.6089 -1.4461 15 6 2.2115 -6.4149 -2.5216 16 8 2.4813 -5.9451 -3.6103 17 6 1.9955 -7.8649 -2.3782 18 9 1.6963 -8.3869 -1.1686 19 6 2.0951 -8.6608 -3.4404 20 6 2.4151 -8.2312 -4.8570 21 6 2.4111 -9.5078 -5.7233 22 6 1.5191 -10.4905 -4.9230 23 6 1.9020 -10.1669 -3.4577 24 6 2.2990 -4.1482 -1.4435 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 0.1428 -4.6646 0.3512 28 1 1.3224 -4.8378 1.6940 29 1 2.6960 -6.3636 0.4426 30 1 1.0595 -6.8509 -0.0921 31 1 1.6578 -7.5335 -5.2147 32 1 3.3990 -7.7633 -4.8912 33 1 3.4201 -9.9064 -5.8296 34 1 1.9756 -9.3051 -6.7017 35 1 1.7637 -11.5239 -5.1685 36 1 0.4621 -10.2914 -5.1001 37 1 2.8285 -10.6725 -3.1860 38 1 1.0973 -10.4553 -2.7813 39 1 1.5821 -3.6809 -2.1188 40 1 3.3146 -3.9030 -1.7539 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018713005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -56.734313 kcal Electronic energy + Delta-G solvation = -22155.133675 eV Core-core repulsion = 18691.545975 eV Total energy + Delta-G solvation = -3463.587699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.97194 -39.77612 -38.34869 -37.09929 -34.12814 -31.69606 -31.29641 -29.61299 -29.06052 -27.83917 -25.65767 -23.82064 -22.53163 -21.26790 -20.69679 -19.76265 -18.69648 -17.51106 -17.07556 -16.45888 -16.37575 -15.82004 -15.37255 -15.15651 -14.50690 -14.13163 -13.87165 -13.54248 -13.43811 -13.27273 -12.82636 -12.74721 -12.57541 -12.12588 -11.90395 -11.69367 -11.53291 -11.40699 -11.32164 -11.13448 -10.87547 -10.82643 -10.75381 -10.29878 -10.06560 -9.79478 -9.72194 -9.04676 -9.00403 -8.31286 -7.09783 -5.84072 -3.15158 1.09259 3.01863 3.15182 3.41752 3.46373 3.47108 4.02349 4.13893 4.38481 4.54037 4.73327 4.86826 4.97629 5.02479 5.16551 5.24163 5.29412 5.32781 5.48117 5.55788 5.58529 5.63796 5.71761 5.75856 5.80096 5.87559 5.96183 5.98649 6.08973 6.11327 6.26206 6.30476 6.36682 6.51417 6.68567 6.86058 7.63911 7.68446 8.17919 8.33438 9.45159 9.98399 10.33332 11.37885 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.003390 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.917657 B = 8258.047647 C = 8772.548296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.069 0.931 12 C -0.142 4.142 13 C 0.093 3.907 14 N -0.603 5.603 15 C 0.555 3.445 16 O -0.528 6.528 17 C 0.000 4.000 18 F -0.135 7.135 19 C -0.084 4.084 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.094 4.094 24 C 0.083 3.917 25 H 0.258 0.742 26 H 0.387 0.613 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -21.955 -5.345 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.181 4.181 13 C -0.030 4.030 14 N -0.336 5.336 15 C 0.343 3.657 16 O -0.407 6.407 17 C -0.022 4.022 18 F -0.114 7.114 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.131 4.131 24 C -0.042 4.042 25 H 0.067 0.933 26 H 0.222 0.778 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.671 -21.539 -5.904 22.633 hybrid contribution 0.079 0.839 0.313 0.898 sum 3.750 -20.700 -5.592 21.767 Atomic orbital electron populations 1.69651 1.05186 1.26068 1.56834 1.24777 0.95532 0.97872 1.02309 0.86238 0.78553 0.83251 0.77950 1.21093 1.21626 1.21126 1.19230 0.91105 0.83938 1.43857 0.90947 1.42372 1.05837 0.99407 1.87528 1.21215 0.95418 0.86373 0.91079 0.91271 1.23119 1.00679 0.94060 1.00238 1.22617 1.00316 0.98347 0.81753 1.48545 1.67625 1.09378 1.08023 1.17805 0.78944 0.84923 0.84004 1.90811 1.49479 1.75200 1.25179 1.18929 1.10864 0.91556 0.80856 1.91419 1.91164 1.86633 1.42144 1.22958 0.94431 0.96206 0.95111 1.21133 1.03765 0.97511 0.89104 1.22472 1.00132 0.95201 0.98737 1.22518 1.00242 0.99522 0.93744 1.21474 1.02471 0.90805 0.98315 1.23363 1.01467 0.76827 1.02570 0.93267 0.77842 0.90542 0.89913 0.91355 0.89819 0.89139 0.89319 0.91231 0.90944 0.90877 0.90963 0.89340 0.90298 0.90716 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.81 9.96 -15.06 -0.15 -6.96 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.39 5.15 -51.66 -0.27 -17.66 16 10 C 0.17 3.32 3.61 -66.10 -0.24 3.08 16 11 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 12 C -0.14 -2.21 6.71 -24.58 -0.17 -2.38 16 13 C 0.09 1.31 6.07 -2.53 -0.02 1.29 16 14 N -0.60 -10.18 3.34 -171.62 -0.57 -10.75 16 15 C 0.56 9.40 7.81 -12.58 -0.10 9.30 16 16 O -0.53 -10.11 14.46 5.27 0.08 -10.04 16 17 C 0.00 0.00 7.30 -37.68 -0.28 -0.27 16 18 F -0.13 -1.75 13.81 2.25 0.03 -1.72 16 19 C -0.08 -0.99 6.16 -100.20 -0.62 -1.60 16 20 C -0.08 -0.88 4.81 -26.85 -0.13 -1.01 16 21 C -0.13 -1.02 6.88 -25.02 -0.17 -1.20 16 22 C -0.12 -0.89 6.94 -24.70 -0.17 -1.06 16 23 C -0.09 -0.81 6.44 -26.33 -0.17 -0.98 16 24 C 0.08 1.59 6.64 -2.92 -0.02 1.57 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.39 10.06 7.76 -40.82 -0.32 9.74 16 27 H 0.08 1.25 8.01 -51.92 -0.42 0.83 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.09 6.10 -51.93 -0.32 0.77 16 31 H 0.09 1.14 7.67 -51.93 -0.40 0.74 16 32 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -30.60 328.28 -8.43 -39.03 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.03 Total: 6.59 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.32 Total: -0.55 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.11 Total: -55.38 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.60 -8.43 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018713005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.703 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds