Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00467 * 2 1 4 4 H 1.48503 * 109.46914 * 239.99859 * 3 2 1 5 5 H 1.48497 * 109.46804 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47124 * 119.99852 * 3 2 1 7 7 C 1.38814 * 119.99254 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99478 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00204 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.84942 * 336.19760 * 10 9 7 12 12 C 1.53778 * 113.61476 * 107.50499 * 10 9 7 13 13 C 1.53776 * 87.08496 * 139.98085 * 12 10 9 14 14 H 1.08995 * 113.69415 * 220.00851 * 13 12 10 15 15 N 1.46499 * 113.61564 * 89.11232 * 13 12 10 16 16 C 1.34784 * 119.99893 * 107.50591 * 15 13 12 17 17 O 1.21597 * 119.99617 * 359.97438 * 16 15 13 18 18 C 1.47295 * 119.99812 * 179.72659 * 16 15 13 19 19 F 1.35097 * 120.00329 * 0.02562 * 18 16 15 20 20 C 1.33114 * 119.99498 * 179.97438 * 18 16 15 21 21 C 1.51445 * 126.34384 * 359.69663 * 20 18 16 22 22 C 1.54278 * 106.85190 * 180.23893 * 21 20 18 23 23 C 1.54980 * 103.66274 * 23.47878 * 22 21 20 24 24 C 1.51845 * 126.33856 * 179.97438 * 20 18 16 25 25 C 1.53782 * 87.08225 * 334.56955 * 13 12 10 26 26 H 0.97007 * 119.99312 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99480 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.61538 * 25.42885 * 12 10 9 29 29 H 1.09000 * 113.61379 * 254.52955 * 12 10 9 30 30 H 0.97005 * 120.00261 * 287.50803 * 15 13 12 31 31 H 1.08999 * 109.98057 * 299.71654 * 21 20 18 32 32 H 1.09000 * 109.99065 * 61.02578 * 21 20 18 33 33 H 1.09006 * 110.79515 * 264.85610 * 22 21 20 34 34 H 1.08995 * 110.56034 * 141.98880 * 22 21 20 35 35 H 1.09004 * 110.83607 * 204.49474 * 23 22 21 36 36 H 1.09002 * 111.00665 * 80.99266 * 23 22 21 37 37 H 1.08997 * 110.44465 * 274.93125 * 24 20 18 38 38 H 1.08997 * 110.44256 * 37.33387 * 24 20 18 39 39 H 1.08997 * 113.61994 * 139.97967 * 25 13 12 40 40 H 1.09002 * 113.61403 * 270.88575 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 3.0653 -3.5640 -0.4048 12 6 1.9987 -4.4023 1.3443 13 6 1.8476 -5.6977 0.5296 14 1 1.1333 -6.4022 0.9556 15 7 3.1251 -6.3239 0.1805 16 6 3.5100 -7.4589 0.7970 17 8 2.7970 -7.9629 1.6434 18 6 4.7917 -8.0918 0.4417 19 9 5.5818 -7.5344 -0.5018 20 6 5.1720 -9.2125 1.0511 21 6 4.4070 -9.9523 2.1285 22 6 5.2564 -11.1802 2.5173 23 6 6.6952 -10.7741 2.1088 24 6 6.4561 -9.9828 0.7987 25 6 1.2599 -4.8289 -0.5950 26 1 -0.4849 0.8402 -0.0004 27 1 0.3554 -2.3880 -0.0002 28 1 1.1205 -4.1570 1.9414 29 1 2.9268 -4.3503 1.9136 30 1 3.6941 -5.9216 -0.4944 31 1 4.2646 -9.3061 2.9947 32 1 3.4407 -10.2775 1.7429 33 1 4.9361 -12.0632 1.9641 34 1 5.1996 -11.3606 3.5907 35 1 7.3087 -11.6556 1.9225 36 1 7.1523 -10.1390 2.8676 37 1 6.3314 -10.6658 -0.0415 38 1 7.2813 -9.2959 0.6106 39 1 1.5914 -5.1213 -1.5913 40 1 0.1795 -4.7002 -0.5281 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020071423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = -47.283399 kcal Electronic energy + Delta-G solvation = -21673.263813 eV Core-core repulsion = 18210.085937 eV Total energy + Delta-G solvation = -3463.177877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.99745 -40.08111 -38.60360 -37.61060 -34.07259 -32.62726 -31.50750 -29.88268 -29.14087 -26.06549 -25.14615 -24.39993 -22.49013 -21.50240 -21.09200 -19.31451 -18.78713 -17.94484 -17.10345 -16.56846 -16.36188 -15.75984 -15.49577 -14.96684 -14.70692 -14.39771 -13.86922 -13.74097 -13.63309 -13.52128 -12.81479 -12.66546 -12.48271 -12.14466 -11.87550 -11.79588 -11.67875 -11.47766 -11.41175 -10.95784 -10.89445 -10.78692 -10.34802 -10.25998 -9.96137 -9.88797 -9.57711 -9.18254 -8.90992 -8.76704 -6.99441 -5.80520 -3.09630 0.96307 2.95325 2.98779 3.42378 3.46897 3.47854 3.92759 4.17678 4.30942 4.57248 4.66511 4.80501 4.94101 5.00307 5.08535 5.18294 5.21994 5.41607 5.42761 5.47625 5.50317 5.62587 5.69430 5.77773 5.84992 5.87799 5.88636 5.99462 6.06284 6.20349 6.24499 6.30293 6.47145 6.61088 6.66465 7.04777 7.48893 7.66614 8.07477 8.37920 9.49125 10.06089 10.40696 11.41733 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034730 B = 0.002968 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.026680 B = 9432.511345 C = 9772.600630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.166 3.834 11 H 0.074 0.926 12 C -0.175 4.175 13 C 0.115 3.885 14 H 0.098 0.902 15 N -0.697 5.697 16 C 0.549 3.451 17 O -0.524 6.524 18 C -0.009 4.009 19 F -0.137 7.137 20 C -0.078 4.078 21 C -0.079 4.079 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.096 4.096 25 C -0.159 4.159 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.405 0.595 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.248 -22.628 1.624 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.349 5.349 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.116 0.884 15 N -0.346 5.346 16 C 0.336 3.664 17 O -0.403 6.403 18 C -0.031 4.031 19 F -0.115 7.115 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.133 4.133 25 C -0.199 4.199 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.838 -22.738 2.171 25.282 hybrid contribution 0.607 1.354 -0.556 1.585 sum 11.445 -21.384 1.614 24.308 Atomic orbital electron populations 1.69654 1.05143 1.25915 1.57289 1.24772 0.95536 0.97811 1.02702 0.86255 0.78545 0.83429 0.77883 1.21213 1.21648 1.21203 1.19255 0.91048 0.84230 1.43204 0.91154 1.42386 1.05763 0.99820 1.86965 1.21628 0.95133 0.85225 0.92648 0.90806 1.24314 1.02098 0.95034 1.00320 1.21882 0.84478 0.94206 0.98456 0.88358 1.45613 1.22263 1.25121 1.41625 1.18108 0.85132 0.81109 0.82099 1.90805 1.53579 1.63593 1.32298 1.18920 0.92260 0.96537 0.95354 1.91476 1.72816 1.84891 1.62363 1.23011 0.97343 0.92531 0.95213 1.21150 0.98322 0.95465 0.96631 1.22476 0.94743 0.97750 1.01613 1.22529 0.97256 0.99803 0.96464 1.21505 0.94229 0.98420 0.99112 1.23872 1.01670 0.97168 0.97193 0.93363 0.77989 0.89396 0.92360 0.76005 0.89070 0.89239 0.91186 0.90901 0.90816 0.90918 0.89226 0.90184 0.91659 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -17.64 5.40 -52.64 -0.28 -17.93 16 10 C 0.17 3.21 4.36 -67.12 -0.29 2.92 16 11 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 13 C 0.11 1.75 4.32 -67.12 -0.29 1.46 16 14 H 0.10 1.53 7.46 -51.93 -0.39 1.14 16 15 N -0.70 -9.62 5.26 -54.14 -0.28 -9.91 16 16 C 0.55 7.79 7.77 -12.57 -0.10 7.69 16 17 O -0.52 -8.48 13.72 5.28 0.07 -8.41 16 18 C -0.01 -0.10 7.42 -37.68 -0.28 -0.38 16 19 F -0.14 -1.64 16.52 2.25 0.04 -1.61 16 20 C -0.08 -0.81 6.16 -100.20 -0.62 -1.43 16 21 C -0.08 -0.77 4.81 -26.85 -0.13 -0.90 16 22 C -0.13 -0.89 6.87 -25.02 -0.17 -1.06 16 23 C -0.12 -0.79 6.94 -24.68 -0.17 -0.96 16 24 C -0.10 -0.74 6.45 -26.31 -0.17 -0.91 16 25 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.39 10.12 7.92 -40.82 -0.32 9.80 16 28 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.40 5.04 8.25 -40.82 -0.34 4.70 16 31 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 32 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.51 8.12 -51.93 -0.42 1.08 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -30.76 335.29 -8.60 -39.36 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.04 Total: 10.44 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.86 Total: -6.99 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.16 Total: -55.13 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.76 -8.60 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020071423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.924 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds