Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00467 * 2 1 4 4 H 1.48503 * 109.46914 * 239.99859 * 3 2 1 5 5 H 1.48497 * 109.46804 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47124 * 119.99852 * 3 2 1 7 7 C 1.38814 * 119.99254 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99478 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00204 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.84942 * 336.19760 * 10 9 7 12 12 C 1.53778 * 113.61476 * 107.50499 * 10 9 7 13 13 C 1.53776 * 87.08496 * 139.98085 * 12 10 9 14 14 H 1.08995 * 113.69415 * 220.00851 * 13 12 10 15 15 N 1.46499 * 113.61564 * 89.11232 * 13 12 10 16 16 C 1.34784 * 119.99893 * 107.50591 * 15 13 12 17 17 O 1.21597 * 119.99617 * 359.97438 * 16 15 13 18 18 C 1.47295 * 119.99812 * 179.72659 * 16 15 13 19 19 F 1.35097 * 120.00329 * 0.02562 * 18 16 15 20 20 C 1.33114 * 119.99498 * 179.97438 * 18 16 15 21 21 C 1.51445 * 126.34384 * 359.69663 * 20 18 16 22 22 C 1.54278 * 106.85190 * 180.23893 * 21 20 18 23 23 C 1.54980 * 103.66274 * 23.47878 * 22 21 20 24 24 C 1.51845 * 126.33856 * 179.97438 * 20 18 16 25 25 C 1.53782 * 87.08225 * 334.56955 * 13 12 10 26 26 H 0.97007 * 119.99312 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99480 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.61538 * 25.42885 * 12 10 9 29 29 H 1.09000 * 113.61379 * 254.52955 * 12 10 9 30 30 H 0.97005 * 120.00261 * 287.50803 * 15 13 12 31 31 H 1.08999 * 109.98057 * 299.71654 * 21 20 18 32 32 H 1.09000 * 109.99065 * 61.02578 * 21 20 18 33 33 H 1.09006 * 110.79515 * 264.85610 * 22 21 20 34 34 H 1.08995 * 110.56034 * 141.98880 * 22 21 20 35 35 H 1.09004 * 110.83607 * 204.49474 * 23 22 21 36 36 H 1.09002 * 111.00665 * 80.99266 * 23 22 21 37 37 H 1.08997 * 110.44465 * 274.93125 * 24 20 18 38 38 H 1.08997 * 110.44256 * 37.33387 * 24 20 18 39 39 H 1.08997 * 113.61994 * 139.97967 * 25 13 12 40 40 H 1.09002 * 113.61403 * 270.88575 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 3.0653 -3.5640 -0.4048 12 6 1.9987 -4.4023 1.3443 13 6 1.8476 -5.6977 0.5296 14 1 1.1333 -6.4022 0.9556 15 7 3.1251 -6.3239 0.1805 16 6 3.5100 -7.4589 0.7970 17 8 2.7970 -7.9629 1.6434 18 6 4.7917 -8.0918 0.4417 19 9 5.5818 -7.5344 -0.5018 20 6 5.1720 -9.2125 1.0511 21 6 4.4070 -9.9523 2.1285 22 6 5.2564 -11.1802 2.5173 23 6 6.6952 -10.7741 2.1088 24 6 6.4561 -9.9828 0.7987 25 6 1.2599 -4.8289 -0.5950 26 1 -0.4849 0.8402 -0.0004 27 1 0.3554 -2.3880 -0.0002 28 1 1.1205 -4.1570 1.9414 29 1 2.9268 -4.3503 1.9136 30 1 3.6941 -5.9216 -0.4944 31 1 4.2646 -9.3061 2.9947 32 1 3.4407 -10.2775 1.7429 33 1 4.9361 -12.0632 1.9641 34 1 5.1996 -11.3606 3.5907 35 1 7.3087 -11.6556 1.9225 36 1 7.1523 -10.1390 2.8676 37 1 6.3314 -10.6658 -0.0415 38 1 7.2813 -9.2959 0.6106 39 1 1.5914 -5.1213 -1.5913 40 1 0.1795 -4.7002 -0.5281 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020071423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = -66.244929 kcal Electronic energy + Delta-G solvation = -21674.086047 eV Core-core repulsion = 18210.085937 eV Total energy + Delta-G solvation = -3464.000110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.89951 -41.28196 -39.71583 -38.58597 -35.80585 -34.15913 -32.39501 -31.72876 -29.79049 -27.14824 -26.57384 -26.05586 -24.00025 -22.63452 -21.71074 -20.52952 -19.99910 -19.15751 -18.86184 -17.48833 -17.23959 -17.03920 -16.55562 -16.24335 -16.02740 -15.69607 -15.39805 -15.32113 -14.53010 -14.33082 -14.24428 -13.64823 -13.54591 -13.38436 -13.34609 -13.22158 -12.79335 -12.63181 -12.54685 -12.22284 -12.04494 -12.00886 -11.88016 -11.76352 -11.49070 -11.23806 -11.02369 -10.85677 -10.26716 -9.83929 -9.00636 -7.95887 -5.24557 0.03905 1.47129 1.49782 1.55914 1.86987 1.91322 2.55814 3.07078 3.28309 3.35140 3.65384 3.68359 3.79455 3.93046 3.99932 4.13740 4.27796 4.28739 4.29807 4.44375 4.62541 4.65495 4.80017 4.86140 4.88628 4.91224 5.00992 5.04338 5.08623 5.12260 5.17947 5.18568 5.22345 5.38622 5.43372 5.48558 5.64143 6.26055 6.38233 6.96569 7.32445 8.08387 8.31512 9.27098 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034730 B = 0.002968 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.026680 B = 9432.511345 C = 9772.600630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.726 5.726 10 C 0.151 3.849 11 H 0.078 0.922 12 C -0.171 4.171 13 C 0.135 3.865 14 H 0.100 0.900 15 N -0.694 5.694 16 C 0.548 3.452 17 O -0.549 6.549 18 C -0.033 4.033 19 F -0.137 7.137 20 C -0.062 4.062 21 C -0.083 4.083 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.142 4.142 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.412 0.588 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.215 -24.397 1.389 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.364 5.364 10 C 0.041 3.959 11 H 0.096 0.904 12 C -0.213 4.213 13 C 0.029 3.971 14 H 0.118 0.882 15 N -0.344 5.344 16 C 0.336 3.664 17 O -0.430 6.430 18 C -0.055 4.055 19 F -0.116 7.116 20 C -0.065 4.065 21 C -0.120 4.120 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.134 4.134 25 C -0.182 4.182 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.249 0.751 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.861 -24.553 1.924 27.784 hybrid contribution 0.042 1.770 -0.439 1.824 sum 12.903 -22.783 1.486 26.225 Atomic orbital electron populations 1.69809 1.06599 1.26184 1.59354 1.25575 0.96388 1.01143 1.03655 0.85227 0.77221 0.79226 0.78186 1.20230 1.22208 1.20560 1.19663 0.91531 0.85411 1.41294 0.90576 1.42560 1.05441 1.00941 1.87418 1.21956 0.95523 0.84183 0.94232 0.90372 1.24155 1.01400 0.96339 0.99409 1.21579 0.85170 0.93187 0.97174 0.88228 1.45545 1.21840 1.25160 1.41860 1.18435 0.85657 0.80822 0.81509 1.90791 1.54549 1.64250 1.33368 1.18664 0.92078 0.97678 0.97090 1.91470 1.72621 1.85061 1.62469 1.23447 0.98118 0.91370 0.93566 1.21208 0.98539 0.96480 0.95792 1.22477 0.94480 0.96646 1.02420 1.22553 0.97078 1.00434 0.95504 1.21660 0.92637 0.98562 1.00514 1.23691 1.01203 0.95001 0.98295 0.93979 0.79259 0.90588 0.92739 0.75114 0.90588 0.90265 0.89930 0.90020 0.88570 0.91002 0.87574 0.89798 0.89749 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.31 13.06 21.65 0.28 -59.02 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.25 -13.68 9.97 84.03 0.84 -12.85 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -36.32 5.40 -320.44 -1.73 -38.05 16 10 C 0.15 5.79 4.36 45.52 0.20 5.99 16 11 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 12 C -0.17 -6.04 7.68 31.12 0.24 -5.80 16 13 C 0.13 3.99 4.32 45.52 0.20 4.19 16 14 H 0.10 3.02 7.46 -2.39 -0.02 3.00 16 15 N -0.69 -18.51 5.26 -443.45 -2.33 -20.84 16 16 C 0.55 15.21 7.77 86.62 0.67 15.89 16 17 O -0.55 -17.67 13.72 -4.02 -0.06 -17.72 16 18 C -0.03 -0.77 7.42 23.50 0.17 -0.60 16 19 F -0.14 -3.13 16.52 44.97 0.74 -2.39 16 20 C -0.06 -1.20 6.16 -17.00 -0.10 -1.30 16 21 C -0.08 -1.53 4.81 30.52 0.15 -1.38 16 22 C -0.12 -1.39 6.87 31.70 0.22 -1.18 16 23 C -0.12 -1.14 6.94 31.92 0.22 -0.92 16 24 C -0.10 -1.24 6.45 30.87 0.20 -1.04 16 25 C -0.14 -4.39 7.58 31.12 0.24 -4.15 16 26 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 27 H 0.38 20.09 7.92 -92.71 -0.73 19.35 16 28 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.41 9.76 8.25 -92.70 -0.76 8.99 16 31 H 0.08 1.65 7.68 -2.39 -0.02 1.63 16 32 H 0.08 1.63 7.68 -2.39 -0.02 1.61 16 33 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.09 2.92 8.12 -2.39 -0.02 2.90 16 Total: -1.00 -65.98 335.29 2.20 -63.78 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.44 Total: 33.12 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 3.70 Total: -7.00 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -3.78 Total: -117.91 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.06 Total: -17.72 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.74 Total: -2.39 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -65.98 2.20 -63.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020071423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.466 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds