Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99837 * 2 1 4 4 H 1.48507 * 109.46820 * 274.45678 * 3 2 1 5 5 H 1.48493 * 109.47075 * 34.45502 * 3 2 1 6 6 H 1.48498 * 109.47087 * 154.46057 * 3 2 1 7 7 C 1.38814 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00099 * 189.01358 * 7 2 1 9 9 N 1.36932 * 119.99967 * 9.01377 * 7 2 1 10 10 C 1.48148 * 127.83931 * 15.59351 * 9 7 2 11 11 C 1.57693 * 104.67533 * 139.77056 * 10 9 7 12 12 H 1.09003 * 120.32587 * 244.64356 * 11 10 9 13 13 C 1.54285 * 103.38643 * 24.73173 * 11 10 9 14 14 H 1.08999 * 121.81490 * 220.67169 * 13 11 10 15 15 C 1.48145 * 127.83915 * 195.59196 * 9 7 2 16 16 C 1.52996 * 59.72172 * 112.63697 * 13 11 10 17 17 H 1.09003 * 117.44157 * 252.39522 * 16 13 11 18 18 N 1.46500 * 117.44615 * 107.64624 * 16 13 11 19 19 C 1.34782 * 120.00233 * 154.99825 * 18 16 13 20 20 O 1.21289 * 119.99719 * 359.73005 * 19 18 16 21 21 C 1.50695 * 120.00423 * 180.02562 * 19 18 16 22 22 H 1.08999 * 110.01543 * 58.60927 * 21 19 18 23 23 C 1.54271 * 110.03025 * 297.17228 * 21 19 18 24 24 C 1.54889 * 104.19086 * 217.10155 * 23 21 19 25 25 C 1.54884 * 102.74973 * 37.94374 * 24 23 21 26 26 H 1.09002 * 110.60434 * 80.78871 * 25 24 23 27 27 F 1.39906 * 110.48556 * 203.37666 * 25 24 23 28 28 C 1.53866 * 110.03525 * 180.02562 * 21 19 18 29 29 H 0.96995 * 120.00189 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.40587 * 259.20111 * 10 9 7 31 31 H 1.08999 * 110.40504 * 21.51092 * 10 9 7 32 32 H 1.09000 * 110.40729 * 100.80199 * 15 9 7 33 33 H 1.09002 * 110.40710 * 338.37242 * 15 9 7 34 34 H 0.96996 * 119.99881 * 335.00433 * 18 16 13 35 35 H 1.08995 * 110.48568 * 335.78085 * 23 21 19 36 36 H 1.09000 * 110.48760 * 98.42641 * 23 21 19 37 37 H 1.09000 * 110.75581 * 279.62529 * 24 23 21 38 38 H 1.09006 * 110.75414 * 156.25416 * 24 23 21 39 39 H 1.08997 * 110.03509 * 238.57124 * 28 21 19 40 40 H 1.08996 * 110.03544 * 0.02562 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1009 -1.3959 5 1 1.4978 2.6236 0.7921 6 1 3.5916 1.4149 0.6036 7 6 2.0103 -1.2021 0.0005 8 1 3.0802 -1.2078 0.1471 9 7 1.3383 -2.3808 -0.1847 10 6 -0.0349 -2.5717 -0.7068 11 6 0.0664 -3.8353 -1.6448 12 1 -0.1103 -3.7409 -2.7163 13 6 1.2850 -4.5986 -1.0855 14 1 2.0160 -5.0728 -1.7403 15 6 1.8196 -3.7544 0.0914 16 6 -0.1193 -5.1940 -0.9664 17 1 -0.5792 -5.2027 0.0218 18 7 -0.4426 -6.3377 -1.8230 19 6 -1.4040 -7.2067 -1.4525 20 8 -1.9980 -7.0446 -0.4076 21 6 -1.7362 -8.3835 -2.3333 22 1 -0.8499 -9.0002 -2.4819 23 6 -2.2725 -7.8908 -3.6933 24 6 -3.3775 -8.9129 -4.0586 25 6 -4.0386 -9.2057 -2.6889 26 1 -4.7473 -8.4194 -2.4291 27 9 -4.6763 -10.4508 -2.7092 28 6 -2.8594 -9.2192 -1.6950 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7316 -2.7497 0.1123 31 1 -0.3453 -1.7024 -1.2866 32 1 1.4125 -4.1172 1.0352 33 1 2.9092 -3.7784 0.1122 34 1 0.0352 -6.4696 -2.6567 35 1 -2.6948 -6.8906 -3.5971 36 1 -1.4806 -7.9012 -4.4422 37 1 -2.9416 -9.8193 -4.4788 38 1 -4.0975 -8.4732 -4.7489 39 1 -2.5186 -10.2419 -1.5343 40 1 -3.1646 -8.7734 -0.7483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025978297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -38.568100 kcal Electronic energy + Delta-G solvation = -21858.789772 eV Core-core repulsion = 18395.989819 eV Total energy + Delta-G solvation = -3462.799953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.80878 -40.24310 -38.56675 -36.83754 -34.53052 -32.69341 -30.45844 -29.35384 -28.50928 -27.02813 -25.63229 -22.91466 -21.47180 -21.13126 -20.48653 -19.63062 -19.29714 -17.70554 -16.90706 -16.65409 -16.23624 -16.07054 -14.99034 -14.80767 -14.62985 -14.34981 -13.81311 -13.68061 -13.40752 -13.24537 -12.77591 -12.35455 -12.21392 -12.10010 -11.68986 -11.56101 -11.45316 -11.18762 -11.02055 -10.92478 -10.85972 -10.78513 -10.38160 -10.24356 -10.17620 -9.79822 -9.74618 -9.21593 -8.76921 -8.36634 -6.90201 -5.82315 -3.17179 2.56158 3.05452 3.36618 3.41876 3.44237 3.97474 4.02912 4.23001 4.30149 4.44170 4.54077 4.79066 4.84511 4.99468 5.01922 5.13121 5.14137 5.32311 5.34804 5.37770 5.47609 5.50279 5.54483 5.76498 5.78446 5.85363 5.91817 5.95636 6.03793 6.20305 6.48321 6.65442 6.77588 6.84382 7.31890 7.50717 7.53295 7.69042 8.17699 8.22660 9.08104 9.70663 10.47580 11.31864 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.043862 B = 0.002937 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.206602 B = 9531.638883 C = 9675.488820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.188 3.812 11 C -0.183 4.183 12 H 0.105 0.895 13 C -0.184 4.184 14 H 0.101 0.899 15 C 0.156 3.844 16 C 0.092 3.908 17 H 0.131 0.869 18 N -0.696 5.696 19 C 0.519 3.481 20 O -0.535 6.535 21 C -0.110 4.110 22 H 0.104 0.896 23 C -0.115 4.115 24 C -0.146 4.146 25 C 0.083 3.917 26 H 0.093 0.907 27 F -0.213 7.213 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.090 0.910 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -18.016 -9.307 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.061 3.939 11 C -0.204 4.204 12 H 0.123 0.877 13 C -0.205 4.205 14 H 0.119 0.881 15 C 0.029 3.971 16 C -0.013 4.013 17 H 0.149 0.851 18 N -0.344 5.344 19 C 0.305 3.695 20 O -0.412 6.412 21 C -0.132 4.132 22 H 0.122 0.878 23 C -0.153 4.153 24 C -0.184 4.184 25 C 0.047 3.953 26 H 0.111 0.889 27 F -0.194 7.194 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.408 -17.639 -8.486 20.064 hybrid contribution 0.769 0.662 -0.596 1.177 sum -3.639 -16.976 -9.082 19.594 Atomic orbital electron populations 1.69891 1.05069 1.25495 1.55580 1.24915 0.95656 0.98034 1.01634 0.86077 0.78733 0.83247 0.77545 1.21529 1.21626 1.20471 1.19008 0.90823 0.82238 1.43576 0.90475 1.45128 1.13441 1.00008 1.73020 1.21650 0.86765 0.92264 0.93193 1.25458 1.01762 0.93219 0.99982 0.87708 1.24263 0.90231 1.02646 1.03329 0.88072 1.21132 0.97188 0.85877 0.92929 1.21914 0.98749 0.84603 0.96081 0.85112 1.45382 1.38204 1.26297 1.24485 1.20439 0.79195 0.83372 0.86501 1.90693 1.51127 1.74710 1.24657 1.21853 1.00487 0.95438 0.95426 0.87807 1.22316 0.98556 0.99584 0.94841 1.23076 0.98327 1.00368 0.96648 1.22493 0.94170 0.82037 0.96582 0.88896 1.92800 1.83925 1.45139 1.97494 1.22733 0.93675 1.01203 1.00606 0.93484 0.95273 0.89216 0.95494 0.92981 0.76793 0.90234 0.89945 0.89879 0.90045 0.89933 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.65 10.86 55.49 0.60 -26.05 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.75 29.56 -169.99 -5.03 16.72 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.08 3.38 -166.73 -0.56 -15.64 16 10 C 0.19 4.49 5.76 -0.57 0.00 4.49 16 11 C -0.18 -3.37 7.34 -87.38 -0.64 -4.01 16 12 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 13 C -0.18 -3.15 6.98 -89.22 -0.62 -3.78 16 14 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 15 C 0.16 3.23 7.04 -2.41 -0.02 3.21 16 16 C 0.09 1.51 5.92 -67.93 -0.40 1.11 16 17 H 0.13 2.48 7.40 -51.93 -0.38 2.09 16 18 N -0.70 -8.67 5.51 -53.81 -0.30 -8.96 16 19 C 0.52 6.70 6.99 -10.99 -0.08 6.62 16 20 O -0.54 -9.22 14.78 5.55 0.08 -9.14 16 21 C -0.11 -0.97 3.30 -90.66 -0.30 -1.26 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 23 C -0.12 -0.81 6.31 -25.07 -0.16 -0.97 16 24 C -0.15 -1.01 6.70 -24.74 -0.17 -1.17 16 25 C 0.08 0.74 4.66 -25.10 -0.12 0.62 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 F -0.21 -2.29 17.17 2.25 0.04 -2.25 16 28 C -0.14 -1.37 6.20 -25.64 -0.16 -1.53 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.39 6.50 -51.93 -0.34 2.05 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.74 8.83 -40.82 -0.36 3.38 16 35 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.10 1.22 6.39 -51.93 -0.33 0.89 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -31.87 328.18 -9.15 -41.02 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.02 Total: 2.73 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.91 Total: -3.37 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.26 Total: -50.65 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.87 -9.15 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025978297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.449 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds