Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 300.00306 * 3 2 1 6 6 H 1.48507 * 109.46865 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99397 * 359.97438 * 7 2 1 10 10 C 1.48147 * 127.83511 * 180.02562 * 9 7 2 11 11 C 1.54388 * 104.61527 * 140.41382 * 10 9 7 12 12 H 1.09002 * 118.18441 * 244.20311 * 11 10 9 13 13 C 1.54288 * 104.96091 * 23.86829 * 11 10 9 14 14 H 1.09002 * 121.81761 * 222.17258 * 13 11 10 15 15 C 1.51827 * 127.61291 * 0.33947 * 9 7 2 16 16 C 1.53001 * 59.72294 * 114.13553 * 13 11 10 17 17 H 1.09000 * 117.44429 * 252.39637 * 16 13 11 18 18 N 1.46505 * 117.44125 * 107.64720 * 16 13 11 19 19 C 1.34771 * 119.99654 * 155.00283 * 18 16 13 20 20 O 1.21283 * 120.00368 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99786 * 180.02562 * 19 18 16 22 22 H 1.09006 * 110.01819 * 58.60915 * 21 19 18 23 23 C 1.53878 * 110.03410 * 180.02562 * 21 19 18 24 24 C 1.54257 * 106.59783 * 119.28578 * 23 21 19 25 25 C 1.54886 * 104.19942 * 23.61085 * 24 23 21 26 26 H 1.09004 * 110.75864 * 203.74122 * 25 24 23 27 27 F 1.39903 * 110.75639 * 80.55350 * 25 24 23 28 28 C 1.54266 * 110.03294 * 297.16643 * 21 19 18 29 29 H 0.96998 * 120.00080 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.40757 * 21.63824 * 10 9 7 31 31 H 1.08991 * 110.40667 * 259.20123 * 10 9 7 32 32 H 1.08997 * 110.21952 * 101.72307 * 15 9 7 33 33 H 1.09001 * 112.25708 * 338.13628 * 15 9 7 34 34 H 0.96999 * 120.00042 * 334.99928 * 18 16 13 35 35 H 1.09007 * 110.03059 * 238.57328 * 23 21 19 36 36 H 1.08999 * 110.02973 * 359.94732 * 23 21 19 37 37 H 1.09007 * 110.48356 * 142.29151 * 24 23 21 38 38 H 1.08996 * 110.48757 * 264.92662 * 24 23 21 39 39 H 1.08997 * 110.48411 * 335.78108 * 28 21 19 40 40 H 1.09000 * 110.48684 * 98.42642 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.8844 -3.7601 -0.0005 11 6 0.9652 -4.5552 0.9514 12 1 1.3970 -4.9564 1.8683 13 6 -0.3710 -3.7838 0.9514 14 1 -0.9345 -3.6104 1.8682 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2957 -5.1962 0.3680 17 1 -0.3524 -5.2957 -0.7160 18 7 -0.9200 -6.2775 1.1345 19 6 -1.3391 -7.3937 0.5063 20 8 -1.2000 -7.5030 -0.6935 21 6 -1.9818 -8.5057 1.2947 22 1 -2.8653 -8.1332 1.8133 23 6 -2.3693 -9.6617 0.3559 24 6 -1.5849 -10.9005 0.8353 25 6 -1.2756 -10.6020 2.3233 26 1 -0.4043 -11.1653 2.6573 27 9 -2.3851 -10.8857 3.1269 28 6 -0.9752 -9.0829 2.3113 29 1 -0.4850 0.8400 0.0004 30 1 2.9073 -3.7538 0.3762 31 1 1.8506 -4.1842 -1.0040 32 1 -0.5204 -2.8478 -1.0095 33 1 -0.7143 -1.7149 0.3636 34 1 -1.0315 -6.1900 2.0941 35 1 -3.4410 -9.8508 0.4191 36 1 -2.0934 -9.4180 -0.6700 37 1 -2.1971 -11.7979 0.7454 38 1 -0.6607 -11.0098 0.2680 39 1 0.0474 -8.8988 1.9822 40 1 -1.1422 -8.6537 3.2992 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025978301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -33.695680 kcal Electronic energy + Delta-G solvation = -21936.296440 eV Core-core repulsion = 18473.707771 eV Total energy + Delta-G solvation = -3462.588669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.88517 -40.17531 -38.49460 -36.67191 -34.42331 -32.67553 -30.42487 -29.20289 -28.80167 -27.06765 -25.68133 -22.92003 -21.37701 -21.01760 -20.44894 -19.55829 -19.17261 -17.69175 -16.95272 -16.58018 -16.15229 -15.95871 -15.37084 -14.97660 -14.71128 -14.26075 -13.81166 -13.57625 -13.27467 -13.10945 -12.73976 -12.41925 -12.21791 -11.70391 -11.66614 -11.46190 -11.27730 -11.20910 -11.15315 -11.10808 -10.87593 -10.77870 -10.35595 -10.19396 -10.03761 -9.77253 -9.67820 -9.19762 -8.83397 -8.35853 -6.94173 -5.68296 -3.12382 2.58614 3.10231 3.38275 3.43381 3.45973 3.89274 4.01180 4.30632 4.34575 4.45346 4.46048 4.83087 4.90372 5.03590 5.11570 5.12407 5.16960 5.27338 5.34486 5.40320 5.41671 5.56246 5.64386 5.79078 5.79666 5.88765 5.94340 6.03922 6.17959 6.25976 6.52823 6.65622 6.81167 6.87207 7.30496 7.52899 7.56413 7.77460 8.25378 8.25629 9.10427 9.74645 10.45730 11.35187 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.049737 B = 0.002933 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.823033 B = 9545.011378 C = 9599.784415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.160 3.840 11 C -0.185 4.185 12 H 0.101 0.899 13 C -0.171 4.171 14 H 0.101 0.899 15 C 0.156 3.844 16 C 0.091 3.909 17 H 0.130 0.870 18 N -0.696 5.696 19 C 0.520 3.480 20 O -0.537 6.537 21 C -0.113 4.113 22 H 0.102 0.898 23 C -0.119 4.119 24 C -0.147 4.147 25 C 0.083 3.917 26 H 0.093 0.907 27 F -0.208 7.208 28 C -0.140 4.140 29 H 0.253 0.747 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.018 0.982 33 H 0.137 0.863 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -19.971 5.927 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.033 3.967 11 C -0.207 4.207 12 H 0.119 0.881 13 C -0.192 4.192 14 H 0.119 0.881 15 C 0.031 3.969 16 C -0.015 4.015 17 H 0.147 0.853 18 N -0.344 5.344 19 C 0.306 3.694 20 O -0.414 6.414 21 C -0.135 4.135 22 H 0.120 0.880 23 C -0.157 4.157 24 C -0.185 4.185 25 C 0.047 3.953 26 H 0.111 0.889 27 F -0.189 7.189 28 C -0.178 4.178 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.154 0.846 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.728 -19.758 5.057 20.733 hybrid contribution 0.309 0.841 0.768 1.180 sum -3.419 -18.917 5.825 20.087 Atomic orbital electron populations 1.69490 1.04974 1.24671 1.58015 1.24762 0.95706 0.97723 1.02764 0.85939 0.78577 0.83371 0.77259 1.20536 1.21713 1.21761 1.19168 0.90431 0.82162 1.42482 0.90177 1.46143 1.01339 0.99398 1.85669 1.21075 0.94790 0.85830 0.94960 1.24383 0.91152 1.02810 1.02347 0.88058 1.24629 0.99791 0.91823 1.02989 0.88080 1.22550 0.85407 0.95198 0.93695 1.21945 0.97599 0.85646 0.96303 0.85260 1.45414 1.60782 1.17027 1.11128 1.20437 0.77994 0.82744 0.88182 1.90674 1.56066 1.79765 1.14857 1.21942 0.99438 0.95157 0.96921 0.87963 1.22168 1.00311 0.92006 1.01209 1.22973 1.02041 0.99221 0.94255 1.22446 0.86205 0.96333 0.90340 0.88942 1.92811 1.56174 1.94689 1.75240 1.22963 1.00309 0.94644 0.99885 0.93612 0.93056 0.95573 0.96430 0.84622 0.76742 0.90996 0.88478 0.90176 0.89542 0.89066 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.12 55.49 0.56 -25.98 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.21 -5.94 10.42 -15.05 -0.16 -6.10 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.41 3.46 -165.72 -0.57 -15.98 16 10 C 0.16 3.38 7.05 -2.41 -0.02 3.36 16 11 C -0.19 -3.31 7.06 -89.22 -0.63 -3.94 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.17 -3.26 6.96 -89.23 -0.62 -3.88 16 14 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 15 C 0.16 3.75 6.43 -0.31 0.00 3.75 16 16 C 0.09 1.53 5.97 -67.92 -0.41 1.12 16 17 H 0.13 2.47 7.40 -51.93 -0.38 2.09 16 18 N -0.70 -9.11 5.51 -53.80 -0.30 -9.41 16 19 C 0.52 6.95 6.99 -10.99 -0.08 6.87 16 20 O -0.54 -9.30 14.78 5.56 0.08 -9.22 16 21 C -0.11 -1.09 3.30 -90.65 -0.30 -1.38 16 22 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.12 -1.13 6.40 -25.62 -0.16 -1.30 16 24 C -0.15 -1.12 6.63 -25.08 -0.17 -1.29 16 25 C 0.08 0.62 4.70 -24.76 -0.12 0.51 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 F -0.21 -2.02 17.22 2.25 0.04 -1.98 16 28 C -0.14 -1.08 6.11 -25.09 -0.15 -1.23 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.14 3.65 5.34 -51.93 -0.28 3.37 16 34 H 0.40 4.13 8.83 -40.82 -0.36 3.77 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.13 6.39 -51.93 -0.33 0.79 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.71 7.85 -51.93 -0.41 0.31 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -31.56 326.99 -9.14 -40.70 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.96 Total: 4.09 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.90 Total: -4.02 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.31 Total: -51.37 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.56 -9.14 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025978301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.006 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds