Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47395 * 239.99825 * 3 2 1 5 5 H 1.48499 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47145 * 119.99637 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 189.10713 * 7 2 1 9 9 N 1.36934 * 120.00098 * 9.10877 * 7 2 1 10 10 C 1.48146 * 127.83756 * 15.61148 * 9 7 2 11 11 C 1.54386 * 104.71862 * 140.35768 * 10 9 7 12 12 H 1.09000 * 117.61505 * 244.84368 * 11 10 9 13 13 C 1.54589 * 104.81510 * 23.89931 * 11 10 9 14 14 H 1.09004 * 123.10214 * 221.62144 * 13 11 10 15 15 C 1.48143 * 127.83841 * 195.61748 * 9 7 2 16 16 C 1.52995 * 59.72090 * 114.10717 * 13 11 10 17 17 H 1.09002 * 117.44106 * 252.31807 * 16 13 11 18 18 N 1.46500 * 117.44403 * 107.56841 * 16 13 11 19 19 C 1.34776 * 119.99892 * 155.00043 * 18 16 13 20 20 O 1.21279 * 120.00000 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99959 * 180.02562 * 19 18 16 22 22 H 1.08996 * 110.01724 * 58.60468 * 21 19 18 23 23 C 1.53872 * 110.03474 * 180.02562 * 21 19 18 24 24 C 1.54259 * 106.60362 * 119.28258 * 23 21 19 25 25 C 1.54897 * 104.19473 * 23.61070 * 24 23 21 26 26 H 1.08995 * 110.75480 * 80.55550 * 25 24 23 27 27 F 1.39903 * 110.75746 * 203.74330 * 25 24 23 28 28 C 1.54272 * 110.03319 * 297.16529 * 21 19 18 29 29 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.41176 * 259.20411 * 10 9 7 31 31 H 1.09006 * 110.40572 * 21.51967 * 10 9 7 32 32 H 1.08994 * 110.40818 * 338.36822 * 15 9 7 33 33 H 1.08999 * 110.40690 * 100.80222 * 15 9 7 34 34 H 0.97002 * 119.99751 * 334.99935 * 18 16 13 35 35 H 1.09004 * 110.03422 * 238.56788 * 23 21 19 36 36 H 1.09000 * 110.03126 * 359.94726 * 23 21 19 37 37 H 1.08998 * 110.49101 * 142.28622 * 24 23 21 38 38 H 1.09003 * 110.49213 * 264.93372 * 24 23 21 39 39 H 1.08997 * 110.48340 * 335.78559 * 28 21 19 40 40 H 1.09000 * 110.48630 * 98.42282 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1486 9 7 1.3385 -2.3807 -0.1867 10 6 -0.0338 -2.5711 -0.7113 11 6 0.0624 -3.8165 -1.6186 12 1 -0.1161 -3.6797 -2.6851 13 6 1.2866 -4.5980 -1.0888 14 1 2.0188 -5.0718 -1.7425 15 6 1.8193 -3.7545 0.0895 16 6 -0.1180 -5.1933 -0.9726 17 1 -0.5686 -5.2276 0.0194 18 7 -0.4520 -6.3129 -1.8565 19 6 -1.4119 -7.1894 -1.5004 20 8 -1.9988 -7.0516 -0.4481 21 6 -1.7551 -8.3413 -2.4094 22 1 -0.8717 -8.9557 -2.5829 23 6 -2.8744 -9.1915 -1.7832 24 6 -4.0628 -9.1483 -2.7658 25 6 -3.4134 -8.8204 -4.1333 26 1 -2.9866 -9.7168 -4.5830 27 9 -4.3439 -8.2304 -4.9954 28 6 -2.3031 -7.8112 -3.7505 29 1 -0.4850 0.8400 0.0004 30 1 -0.7319 -2.7496 0.1064 31 1 -0.3431 -1.7015 -1.2911 32 1 2.9087 -3.7785 0.1122 33 1 1.4104 -4.1178 1.0324 34 1 0.0177 -6.4233 -2.6980 35 1 -2.5346 -10.2190 -1.6533 36 1 -3.1688 -8.7714 -0.8215 37 1 -4.5624 -10.1163 -2.8032 38 1 -4.7660 -8.3659 -2.4801 39 1 -2.7220 -6.8130 -3.6235 40 1 -1.5182 -7.8031 -4.5068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025978308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = -38.899776 kcal Electronic energy + Delta-G solvation = -21918.196196 eV Core-core repulsion = 18455.381860 eV Total energy + Delta-G solvation = -3462.814336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -47.83520 -40.24755 -38.63498 -36.83820 -34.52295 -32.69930 -30.48579 -29.20666 -28.58641 -27.17394 -25.64897 -22.91846 -21.46857 -21.13910 -20.45320 -19.58384 -19.29300 -17.69801 -16.93198 -16.65923 -16.27543 -15.87048 -15.27732 -14.78525 -14.70667 -14.23362 -13.91344 -13.59195 -13.39622 -13.24850 -12.77677 -12.50908 -12.23496 -11.80199 -11.65943 -11.51672 -11.44012 -11.31012 -11.01025 -10.91935 -10.82506 -10.79548 -10.42317 -10.21183 -10.20572 -9.78778 -9.72876 -9.18620 -8.75291 -8.35864 -6.88023 -5.80207 -3.15012 2.55919 3.05914 3.38588 3.42875 3.44349 3.87960 4.09226 4.22510 4.30351 4.45652 4.46701 4.73661 4.82020 4.95789 5.09905 5.13520 5.14452 5.33357 5.34701 5.36600 5.38489 5.55395 5.64458 5.76922 5.81447 5.87503 5.92708 6.01177 6.14558 6.23918 6.49654 6.66449 6.78432 6.86463 7.35070 7.52290 7.54141 7.70572 8.19760 8.23228 9.09852 9.72712 10.49633 11.33952 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033967 B = 0.003123 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.140229 B = 8964.088265 C = 9305.098307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.179 4.179 12 H 0.102 0.898 13 C -0.184 4.184 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.096 3.904 17 H 0.131 0.869 18 N -0.696 5.696 19 C 0.520 3.480 20 O -0.534 6.534 21 C -0.111 4.111 22 H 0.104 0.896 23 C -0.117 4.117 24 C -0.148 4.148 25 C 0.085 3.915 26 H 0.095 0.905 27 F -0.210 7.210 28 C -0.141 4.141 29 H 0.256 0.744 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 -19.816 -8.703 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.201 4.201 12 H 0.120 0.880 13 C -0.205 4.205 14 H 0.121 0.879 15 C 0.029 3.971 16 C -0.010 4.010 17 H 0.149 0.851 18 N -0.344 5.344 19 C 0.306 3.694 20 O -0.410 6.410 21 C -0.132 4.132 22 H 0.122 0.878 23 C -0.155 4.155 24 C -0.186 4.186 25 C 0.048 3.952 26 H 0.113 0.887 27 F -0.191 7.191 28 C -0.180 4.180 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.232 0.768 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.165 -19.402 -7.910 21.362 hybrid contribution 0.761 0.812 -0.667 1.297 sum -3.404 -18.590 -8.576 20.754 Atomic orbital electron populations 1.69885 1.05068 1.25610 1.55448 1.24909 0.95640 0.98002 1.01629 0.86183 0.78539 0.82916 0.77999 1.21080 1.21517 1.20962 1.18947 0.90797 0.82309 1.43767 0.90566 1.45167 1.13384 0.99961 1.73091 1.21058 0.86895 0.92526 0.93690 1.24794 1.01875 0.92888 1.00535 0.87969 1.24336 0.90165 1.02508 1.03503 0.87883 1.21121 0.97183 0.85944 0.92900 1.21893 0.98668 0.84884 0.95513 0.85119 1.45378 1.38544 1.27309 1.23155 1.20387 0.79108 0.83044 0.86851 1.90689 1.51323 1.74384 1.24623 1.21851 1.00828 0.95846 0.94701 0.87829 1.22112 0.93104 0.99622 1.00673 1.22947 0.98781 1.03240 0.93602 1.22597 0.87708 0.95720 0.89144 0.88748 1.92816 1.67971 1.86076 1.72189 1.22927 0.98716 1.00434 0.95886 0.93438 0.95622 0.89104 0.92972 0.95560 0.76778 0.90810 0.88279 0.90301 0.89990 0.89418 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.89 10.86 55.49 0.60 -26.29 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.41 10.35 -15.06 -0.16 -6.57 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -15.23 3.38 -168.86 -0.57 -15.80 16 10 C 0.18 4.48 5.69 -2.41 -0.01 4.46 16 11 C -0.18 -3.39 7.09 -88.98 -0.63 -4.02 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 13 C -0.18 -3.19 7.06 -89.06 -0.63 -3.82 16 14 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.16 3.25 7.04 -2.41 -0.02 3.24 16 16 C 0.10 1.60 5.97 -67.86 -0.41 1.19 16 17 H 0.13 2.50 7.40 -51.93 -0.38 2.11 16 18 N -0.70 -8.86 5.51 -53.73 -0.30 -9.16 16 19 C 0.52 6.81 6.99 -10.99 -0.08 6.73 16 20 O -0.53 -9.26 14.78 5.56 0.08 -9.18 16 21 C -0.11 -0.95 3.30 -90.65 -0.30 -1.25 16 22 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 23 C -0.12 -1.00 6.40 -25.62 -0.16 -1.17 16 24 C -0.15 -1.17 6.63 -25.07 -0.17 -1.34 16 25 C 0.08 0.66 4.71 -24.76 -0.12 0.54 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 27 F -0.21 -2.25 17.22 2.25 0.04 -2.22 16 28 C -0.14 -1.13 6.11 -25.09 -0.15 -1.28 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 2.45 6.51 -51.93 -0.34 2.12 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 3.87 8.83 -40.82 -0.36 3.51 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 1.11 6.39 -51.93 -0.33 0.78 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -32.39 328.05 -9.16 -41.56 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.02 Total: 2.78 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.92 Total: -3.51 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.26 Total: -51.24 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.39 -9.16 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025978308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds