Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47395 * 239.99825 * 3 2 1 5 5 H 1.48499 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47145 * 119.99637 * 3 2 1 7 7 C 1.38816 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 189.10713 * 7 2 1 9 9 N 1.36934 * 120.00098 * 9.10877 * 7 2 1 10 10 C 1.48146 * 127.83756 * 15.61148 * 9 7 2 11 11 C 1.54386 * 104.71862 * 140.35768 * 10 9 7 12 12 H 1.09000 * 117.61505 * 244.84368 * 11 10 9 13 13 C 1.54589 * 104.81510 * 23.89931 * 11 10 9 14 14 H 1.09004 * 123.10214 * 221.62144 * 13 11 10 15 15 C 1.48143 * 127.83841 * 195.61748 * 9 7 2 16 16 C 1.52995 * 59.72090 * 114.10717 * 13 11 10 17 17 H 1.09002 * 117.44106 * 252.31807 * 16 13 11 18 18 N 1.46500 * 117.44403 * 107.56841 * 16 13 11 19 19 C 1.34776 * 119.99892 * 155.00043 * 18 16 13 20 20 O 1.21279 * 120.00000 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99959 * 180.02562 * 19 18 16 22 22 H 1.08996 * 110.01724 * 58.60468 * 21 19 18 23 23 C 1.53872 * 110.03474 * 180.02562 * 21 19 18 24 24 C 1.54259 * 106.60362 * 119.28258 * 23 21 19 25 25 C 1.54897 * 104.19473 * 23.61070 * 24 23 21 26 26 H 1.08995 * 110.75480 * 80.55550 * 25 24 23 27 27 F 1.39903 * 110.75746 * 203.74330 * 25 24 23 28 28 C 1.54272 * 110.03319 * 297.16529 * 21 19 18 29 29 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.41176 * 259.20411 * 10 9 7 31 31 H 1.09006 * 110.40572 * 21.51967 * 10 9 7 32 32 H 1.08994 * 110.40818 * 338.36822 * 15 9 7 33 33 H 1.08999 * 110.40690 * 100.80222 * 15 9 7 34 34 H 0.97002 * 119.99751 * 334.99935 * 18 16 13 35 35 H 1.09004 * 110.03422 * 238.56788 * 23 21 19 36 36 H 1.09000 * 110.03126 * 359.94726 * 23 21 19 37 37 H 1.08998 * 110.49101 * 142.28622 * 24 23 21 38 38 H 1.09003 * 110.49213 * 264.93372 * 24 23 21 39 39 H 1.08997 * 110.48340 * 335.78559 * 28 21 19 40 40 H 1.09000 * 110.48630 * 98.42282 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1486 9 7 1.3385 -2.3807 -0.1867 10 6 -0.0338 -2.5711 -0.7113 11 6 0.0624 -3.8165 -1.6186 12 1 -0.1161 -3.6797 -2.6851 13 6 1.2866 -4.5980 -1.0888 14 1 2.0188 -5.0718 -1.7425 15 6 1.8193 -3.7545 0.0895 16 6 -0.1180 -5.1933 -0.9726 17 1 -0.5686 -5.2276 0.0194 18 7 -0.4520 -6.3129 -1.8565 19 6 -1.4119 -7.1894 -1.5004 20 8 -1.9988 -7.0516 -0.4481 21 6 -1.7551 -8.3413 -2.4094 22 1 -0.8717 -8.9557 -2.5829 23 6 -2.8744 -9.1915 -1.7832 24 6 -4.0628 -9.1483 -2.7658 25 6 -3.4134 -8.8204 -4.1333 26 1 -2.9866 -9.7168 -4.5830 27 9 -4.3439 -8.2304 -4.9954 28 6 -2.3031 -7.8112 -3.7505 29 1 -0.4850 0.8400 0.0004 30 1 -0.7319 -2.7496 0.1064 31 1 -0.3431 -1.7015 -1.2911 32 1 2.9087 -3.7785 0.1122 33 1 1.4104 -4.1178 1.0324 34 1 0.0177 -6.4233 -2.6980 35 1 -2.5346 -10.2190 -1.6533 36 1 -3.1688 -8.7714 -0.8215 37 1 -4.5624 -10.1163 -2.8032 38 1 -4.7660 -8.3659 -2.4801 39 1 -2.7220 -6.8130 -3.6235 40 1 -1.5182 -7.8031 -4.5068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025978308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = -59.901208 kcal Electronic energy + Delta-G solvation = -21919.106886 eV Core-core repulsion = 18455.381860 eV Total energy + Delta-G solvation = -3463.725026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.54615 -41.36780 -40.08488 -37.70279 -36.09983 -34.36882 -32.22672 -30.05647 -29.25300 -28.95206 -27.55375 -24.20556 -22.71456 -22.01237 -21.86864 -20.93961 -20.52288 -18.89261 -18.56360 -17.74080 -17.18296 -16.81325 -16.67630 -16.19503 -15.63872 -15.50320 -15.26546 -14.87094 -14.68963 -14.58885 -14.13701 -13.78286 -13.38388 -13.30832 -13.11564 -12.91121 -12.68409 -12.38856 -12.23632 -12.17547 -12.07648 -11.97324 -11.88598 -11.67037 -11.53382 -11.45900 -10.92236 -10.80113 -10.69054 -9.72794 -8.94573 -7.92993 -5.30663 1.46013 1.49398 1.51414 1.56439 1.95893 2.47847 2.82210 3.22139 3.27518 3.45032 3.53364 3.61419 3.81575 3.91408 3.93504 4.01064 4.12161 4.21231 4.34391 4.37009 4.44108 4.50346 4.52646 4.71364 4.80951 4.84471 4.88945 4.97431 5.08858 5.15241 5.25590 5.30518 5.32012 5.41043 5.44483 5.54960 5.61808 6.14545 6.52501 6.97821 7.22675 7.65614 8.43967 9.20683 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033967 B = 0.003123 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.140229 B = 8964.088265 C = 9305.098307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.189 3.811 11 C -0.187 4.187 12 H 0.122 0.878 13 C -0.157 4.157 14 H 0.144 0.856 15 C 0.146 3.854 16 C 0.117 3.883 17 H 0.101 0.899 18 N -0.681 5.681 19 C 0.515 3.485 20 O -0.584 6.584 21 C -0.098 4.098 22 H 0.145 0.855 23 C -0.117 4.117 24 C -0.149 4.149 25 C 0.082 3.918 26 H 0.131 0.869 27 F -0.229 7.229 28 C -0.140 4.140 29 H 0.250 0.750 30 H -0.009 1.009 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.018 0.982 34 H 0.419 0.581 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -22.298 -10.812 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.062 3.938 11 C -0.209 4.209 12 H 0.140 0.860 13 C -0.178 4.178 14 H 0.162 0.838 15 C 0.021 3.979 16 C 0.009 3.991 17 H 0.119 0.881 18 N -0.331 5.331 19 C 0.304 3.696 20 O -0.463 6.463 21 C -0.119 4.119 22 H 0.163 0.837 23 C -0.155 4.155 24 C -0.187 4.187 25 C 0.047 3.953 26 H 0.149 0.851 27 F -0.210 7.210 28 C -0.178 4.178 29 H 0.059 0.941 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.257 0.743 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.194 -21.933 -10.053 24.227 hybrid contribution 0.109 1.532 0.082 1.538 sum -2.085 -20.401 -9.972 22.804 Atomic orbital electron populations 1.70107 1.06718 1.25880 1.56991 1.25811 0.96475 1.01537 1.01921 0.85083 0.77138 0.78206 0.78460 1.19927 1.22131 1.20013 1.19399 0.91497 0.83471 1.42919 0.89695 1.45480 1.13681 1.01268 1.73671 1.20758 0.86086 0.93870 0.93043 1.24462 1.04363 0.91672 1.00374 0.86011 1.24248 0.90543 1.01227 1.01753 0.83828 1.21294 0.98176 0.84364 0.94078 1.21391 0.97935 0.84972 0.94758 0.88085 1.45193 1.38740 1.25802 1.23318 1.21313 0.77928 0.83658 0.86739 1.90688 1.52850 1.75643 1.27129 1.21920 1.02396 0.94044 0.93554 0.83711 1.22115 0.93388 1.00945 0.99080 1.22949 0.98357 1.03451 0.93898 1.22860 0.87090 0.96710 0.88682 0.85090 1.92780 1.68861 1.86584 1.72764 1.22953 0.99631 0.99023 0.96200 0.94125 0.99131 0.92563 0.91397 0.96467 0.74307 0.87936 0.91640 0.88325 0.92602 0.92177 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 10.86 21.65 0.24 -58.02 16 2 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 3 Si 0.98 45.66 29.56 68.60 2.03 47.69 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.24 -13.80 10.35 84.03 0.87 -12.93 16 8 H 0.09 4.52 7.84 -2.91 -0.02 4.49 16 9 N -0.62 -32.36 3.38 -688.16 -2.33 -34.69 16 10 C 0.19 9.60 5.69 86.53 0.49 10.09 16 11 C -0.19 -7.02 7.09 -9.73 -0.07 -7.09 16 12 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 13 C -0.16 -5.11 7.06 -9.78 -0.07 -5.18 16 14 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 15 C 0.15 6.06 7.04 86.54 0.61 6.67 16 16 C 0.12 3.80 5.97 45.04 0.27 4.06 16 17 H 0.10 3.99 7.40 -2.39 -0.02 3.97 16 18 N -0.68 -15.71 5.51 -442.31 -2.44 -18.15 16 19 C 0.52 12.73 6.99 87.66 0.61 13.34 16 20 O -0.58 -20.64 14.78 -3.03 -0.04 -20.68 16 21 C -0.10 -1.37 3.30 -10.82 -0.04 -1.40 16 22 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 23 C -0.12 -1.76 6.40 31.32 0.20 -1.56 16 24 C -0.15 -2.11 6.63 31.67 0.21 -1.90 16 25 C 0.08 1.04 4.71 31.87 0.15 1.19 16 26 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 27 F -0.23 -4.54 17.22 44.97 0.77 -3.76 16 28 C -0.14 -1.79 6.11 31.66 0.19 -1.60 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.06 3.22 6.51 -2.38 -0.02 3.20 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.42 6.36 8.83 -92.71 -0.82 5.54 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.48 6.39 -2.39 -0.02 1.46 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16 40 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -75.81 328.05 2.35 -73.46 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.23 Total: 13.67 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 3.89 Total: 0.49 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.53 Total: -110.86 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.04 Total: -20.68 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.77 Total: -3.76 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -75.81 2.35 -73.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025978308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.558 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds