Wall clock time and date at job start Tue Mar 31 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48507 * 109.47158 * 274.99245 * 3 2 1 5 5 H 1.48495 * 109.47530 * 34.99426 * 3 2 1 6 6 H 1.48506 * 109.47222 * 154.99526 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00224 * 184.13683 * 7 2 1 9 9 N 1.36939 * 120.00054 * 4.14211 * 7 2 1 10 10 C 1.46658 * 125.33354 * 171.78543 * 9 7 2 11 11 C 1.53675 * 107.96858 * 179.32609 * 10 9 7 12 12 H 1.08997 * 112.77605 * 219.39285 * 11 10 9 13 13 C 1.53988 * 109.29283 * 93.07146 * 11 10 9 14 14 N 1.46760 * 106.67299 * 221.16304 * 13 11 10 15 15 C 1.34778 * 125.33057 * 198.42623 * 14 13 11 16 16 O 1.21284 * 119.99493 * 174.61606 * 15 14 13 17 17 C 1.50694 * 120.00181 * 354.62116 * 15 14 13 18 18 C 1.53003 * 115.55022 * 280.38692 * 17 15 14 19 19 F 1.39901 * 109.46951 * 174.92037 * 18 17 15 20 20 C 1.52998 * 117.49947 * 134.67711 * 17 15 14 21 21 C 1.52999 * 60.00269 * 252.51309 * 20 17 15 22 22 C 1.46656 * 109.33258 * 18.45393 * 14 13 11 23 23 C 1.53677 * 107.98312 * 359.27840 * 22 14 13 24 24 H 1.09002 * 112.77358 * 220.12355 * 23 22 14 25 25 C 1.46755 * 125.33402 * 351.83339 * 9 7 2 26 26 H 0.97005 * 120.00108 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.76283 * 59.70507 * 10 9 7 28 28 H 1.08994 * 109.77217 * 298.96169 * 10 9 7 29 29 H 1.09001 * 110.01746 * 101.85967 * 13 11 10 30 30 H 1.08997 * 110.05555 * 340.49020 * 13 11 10 31 31 H 1.08997 * 109.46968 * 294.91529 * 18 17 15 32 32 H 1.08998 * 109.47188 * 54.91809 * 18 17 15 33 33 H 1.08999 * 117.50136 * 359.97438 * 20 17 15 34 34 H 1.09006 * 117.50099 * 145.02268 * 20 17 15 35 35 H 1.09011 * 117.49377 * 252.51442 * 21 20 17 36 36 H 1.08992 * 117.50483 * 107.49205 * 21 20 17 37 37 H 1.08995 * 109.76979 * 118.92040 * 22 14 13 38 38 H 1.09004 * 109.76415 * 239.64888 * 22 14 13 39 39 H 1.09007 * 110.01451 * 317.71458 * 25 9 7 40 40 H 1.09000 * 110.01745 * 79.10504 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2021 0.0005 8 1 3.0881 -1.2034 0.0680 9 7 1.3282 -2.3866 -0.0846 10 6 1.9406 -3.7069 -0.2648 11 6 0.8146 -4.7524 -0.2900 12 1 1.0770 -5.6681 0.2396 13 6 0.3895 -5.0072 -1.7480 14 7 -1.0750 -5.1027 -1.7491 15 6 -1.8192 -5.6560 -2.7270 16 8 -3.0182 -5.7714 -2.5849 17 6 -1.1618 -6.1312 -3.9970 18 6 -0.8361 -5.0407 -5.0195 19 9 -0.1301 -5.6007 -6.0897 20 6 -1.5719 -7.5039 -4.5339 21 6 -0.1958 -7.3132 -3.8928 22 6 -1.6016 -4.5012 -0.5196 23 6 -0.4095 -4.0118 0.3176 24 1 -0.5362 -4.2016 1.3835 25 6 -0.1302 -2.5334 -0.0108 26 1 -0.4850 0.8401 -0.0004 27 1 2.6183 -3.9150 0.5633 28 1 2.4895 -3.7334 -1.2061 29 1 0.8246 -5.9403 -2.1058 30 1 0.7099 -4.1796 -2.3808 31 1 -1.7623 -4.5988 -5.3869 32 1 -0.2279 -4.2694 -4.5469 33 1 -2.3169 -8.0635 -3.9684 34 1 -1.6099 -7.6304 -5.6159 35 1 0.6715 -7.3141 -4.5532 36 1 -0.0358 -7.7470 -2.9058 37 1 -2.2477 -3.6594 -0.7684 38 1 -2.1659 -5.2454 0.0425 39 1 -0.5301 -1.8945 0.7767 40 1 -0.5804 -2.2722 -0.9685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049048742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:21 Heat of formation + Delta-G solvation = -28.017859 kcal Electronic energy + Delta-G solvation = -23164.764313 eV Core-core repulsion = 19702.421853 eV Total energy + Delta-G solvation = -3462.342460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.83475 -40.46070 -38.64016 -36.47655 -35.02599 -32.31819 -30.43779 -29.55847 -28.25928 -25.79938 -25.55203 -23.75265 -22.69166 -21.63092 -20.24566 -19.36129 -18.88101 -17.28156 -16.81362 -16.39688 -16.09577 -15.90404 -15.34849 -14.85956 -14.65882 -14.23741 -13.89215 -13.64586 -13.30268 -12.98844 -12.78380 -12.20182 -12.07317 -11.92194 -11.78190 -11.71724 -11.66069 -11.41952 -10.96073 -10.85547 -10.66294 -10.51587 -10.21430 -10.14316 -10.10399 -9.88071 -9.69997 -9.67159 -8.66429 -8.44094 -6.88078 -5.78147 -3.14574 2.54998 2.98363 3.36070 3.41610 3.42869 3.43613 4.26946 4.35313 4.43952 4.53702 4.59192 4.76515 4.88396 4.98290 5.12204 5.20224 5.41561 5.44643 5.47974 5.52428 5.58245 5.63584 5.66713 5.71174 5.81400 5.91194 5.93926 6.13956 6.20273 6.27591 6.46866 6.47023 6.60468 6.78450 7.46662 7.53547 7.63891 7.75059 8.20723 8.23216 9.15384 9.76029 10.40010 11.31603 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.004795 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.980802 B = 5838.582660 C = 6214.012861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.089 0.911 13 C 0.109 3.891 14 N -0.601 5.601 15 C 0.566 3.434 16 O -0.538 6.538 17 C -0.192 4.192 18 C 0.107 3.893 19 F -0.209 7.209 20 C -0.138 4.138 21 C -0.154 4.154 22 C 0.119 3.881 23 C -0.122 4.122 24 H 0.093 0.907 25 C 0.179 3.821 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -13.562 -5.813 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.128 4.128 12 H 0.107 0.893 13 C -0.014 4.014 14 N -0.333 5.333 15 C 0.353 3.647 16 O -0.416 6.416 17 C -0.196 4.196 18 C 0.052 3.948 19 F -0.191 7.191 20 C -0.175 4.175 21 C -0.191 4.191 22 C -0.003 4.003 23 C -0.142 4.142 24 H 0.111 0.889 25 C 0.054 3.946 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.036 -13.419 -5.802 14.656 hybrid contribution 0.531 0.944 -0.052 1.084 sum -0.505 -12.475 -5.854 13.789 Atomic orbital electron populations 1.69922 1.04959 1.25159 1.56649 1.24827 0.95708 0.97776 1.01858 0.86100 0.78686 0.83446 0.77535 1.21588 1.21697 1.20565 1.19040 0.90795 0.82305 1.43759 0.90414 1.44229 1.01950 1.01055 1.85564 1.21077 0.93218 0.85701 0.98110 1.22808 0.97110 0.98727 0.94180 0.89282 1.22239 0.79405 1.01564 0.98192 1.48232 1.07907 1.57355 1.19848 1.18757 0.85923 0.77456 0.82570 1.90696 1.14431 1.56217 1.80216 1.22015 1.07743 0.92519 0.97306 1.21204 0.96989 0.93311 0.83296 1.92751 1.81002 1.87346 1.57952 1.23015 0.98030 0.94809 1.01638 1.23131 0.94491 0.98321 1.03198 1.21806 0.96783 0.97310 0.84403 1.23250 0.92191 1.00058 0.98726 0.88865 1.21333 0.84776 0.88007 1.00527 0.93628 0.95695 0.95594 0.91098 0.90747 0.89602 0.89418 0.87827 0.87483 0.87169 0.88017 0.90800 0.92109 0.90260 0.95646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.30 55.49 0.57 -25.57 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.52 29.56 -169.99 -5.02 16.50 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.17 10.23 -15.06 -0.15 -6.33 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.47 3.38 -171.88 -0.58 -15.05 16 10 C 0.15 2.75 6.58 -3.61 -0.02 2.73 16 11 C -0.11 -1.68 4.10 -88.46 -0.36 -2.04 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C 0.11 1.57 5.75 -3.38 -0.02 1.55 16 14 N -0.60 -9.39 3.31 -172.33 -0.57 -9.96 16 15 C 0.57 8.94 7.00 -10.99 -0.08 8.86 16 16 O -0.54 -10.25 17.31 5.55 0.10 -10.15 16 17 C -0.19 -2.40 1.81 -155.66 -0.28 -2.69 16 18 C 0.11 1.28 7.63 37.16 0.28 1.56 16 19 F -0.21 -2.57 15.94 2.25 0.04 -2.53 16 20 C -0.14 -1.48 9.61 -26.73 -0.26 -1.73 16 21 C -0.15 -1.57 8.16 -26.73 -0.22 -1.79 16 22 C 0.12 1.97 6.19 -3.61 -0.02 1.94 16 23 C -0.12 -2.11 4.10 -88.46 -0.36 -2.48 16 24 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 25 C 0.18 4.06 4.68 -3.38 -0.02 4.05 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.48 7.63 -51.93 -0.40 0.09 16 29 H 0.07 0.84 6.14 -51.93 -0.32 0.52 16 30 H 0.07 1.20 7.42 -51.93 -0.39 0.81 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.06 8.00 -51.93 -0.42 0.65 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.11 1.03 7.93 -51.93 -0.41 0.61 16 35 H 0.11 1.03 7.63 -51.92 -0.40 0.63 16 36 H 0.10 0.99 7.73 -51.93 -0.40 0.59 16 37 H 0.07 1.33 7.63 -51.93 -0.40 0.94 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 2.06 6.63 -51.92 -0.34 1.71 16 40 H 0.03 0.64 7.48 -51.93 -0.39 0.25 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -30.60 321.65 -8.17 -38.77 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.94 Total: -0.24 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.61 Total: 3.40 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.58 Total: -50.58 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.10 Total: -10.15 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.60 -8.17 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049048742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.747 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds