Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48507 * 109.47158 * 274.99245 * 3 2 1 5 5 H 1.48495 * 109.47530 * 34.99426 * 3 2 1 6 6 H 1.48506 * 109.47222 * 154.99526 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00224 * 184.13683 * 7 2 1 9 9 N 1.36939 * 120.00054 * 4.14211 * 7 2 1 10 10 C 1.46658 * 125.33354 * 171.78543 * 9 7 2 11 11 C 1.53675 * 107.96858 * 179.32609 * 10 9 7 12 12 H 1.08997 * 112.77605 * 219.39285 * 11 10 9 13 13 C 1.53988 * 109.29283 * 93.07146 * 11 10 9 14 14 N 1.46760 * 106.67299 * 221.16304 * 13 11 10 15 15 C 1.34778 * 125.33057 * 198.42623 * 14 13 11 16 16 O 1.21284 * 119.99493 * 174.61606 * 15 14 13 17 17 C 1.50694 * 120.00181 * 354.62116 * 15 14 13 18 18 C 1.53003 * 115.55022 * 280.38692 * 17 15 14 19 19 F 1.39901 * 109.46951 * 174.92037 * 18 17 15 20 20 C 1.52998 * 117.49947 * 134.67711 * 17 15 14 21 21 C 1.52999 * 60.00269 * 252.51309 * 20 17 15 22 22 C 1.46656 * 109.33258 * 18.45393 * 14 13 11 23 23 C 1.53677 * 107.98312 * 359.27840 * 22 14 13 24 24 H 1.09002 * 112.77358 * 220.12355 * 23 22 14 25 25 C 1.46755 * 125.33402 * 351.83339 * 9 7 2 26 26 H 0.97005 * 120.00108 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.76283 * 59.70507 * 10 9 7 28 28 H 1.08994 * 109.77217 * 298.96169 * 10 9 7 29 29 H 1.09001 * 110.01746 * 101.85967 * 13 11 10 30 30 H 1.08997 * 110.05555 * 340.49020 * 13 11 10 31 31 H 1.08997 * 109.46968 * 294.91529 * 18 17 15 32 32 H 1.08998 * 109.47188 * 54.91809 * 18 17 15 33 33 H 1.08999 * 117.50136 * 359.97438 * 20 17 15 34 34 H 1.09006 * 117.50099 * 145.02268 * 20 17 15 35 35 H 1.09011 * 117.49377 * 252.51442 * 21 20 17 36 36 H 1.08992 * 117.50483 * 107.49205 * 21 20 17 37 37 H 1.08995 * 109.76979 * 118.92040 * 22 14 13 38 38 H 1.09004 * 109.76415 * 239.64888 * 22 14 13 39 39 H 1.09007 * 110.01451 * 317.71458 * 25 9 7 40 40 H 1.09000 * 110.01745 * 79.10504 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2021 0.0005 8 1 3.0881 -1.2034 0.0680 9 7 1.3282 -2.3866 -0.0846 10 6 1.9406 -3.7069 -0.2648 11 6 0.8146 -4.7524 -0.2900 12 1 1.0770 -5.6681 0.2396 13 6 0.3895 -5.0072 -1.7480 14 7 -1.0750 -5.1027 -1.7491 15 6 -1.8192 -5.6560 -2.7270 16 8 -3.0182 -5.7714 -2.5849 17 6 -1.1618 -6.1312 -3.9970 18 6 -0.8361 -5.0407 -5.0195 19 9 -0.1301 -5.6007 -6.0897 20 6 -1.5719 -7.5039 -4.5339 21 6 -0.1958 -7.3132 -3.8928 22 6 -1.6016 -4.5012 -0.5196 23 6 -0.4095 -4.0118 0.3176 24 1 -0.5362 -4.2016 1.3835 25 6 -0.1302 -2.5334 -0.0108 26 1 -0.4850 0.8401 -0.0004 27 1 2.6183 -3.9150 0.5633 28 1 2.4895 -3.7334 -1.2061 29 1 0.8246 -5.9403 -2.1058 30 1 0.7099 -4.1796 -2.3808 31 1 -1.7623 -4.5988 -5.3869 32 1 -0.2279 -4.2694 -4.5469 33 1 -2.3169 -8.0635 -3.9684 34 1 -1.6099 -7.6304 -5.6159 35 1 0.6715 -7.3141 -4.5532 36 1 -0.0358 -7.7470 -2.9058 37 1 -2.2477 -3.6594 -0.7684 38 1 -2.1659 -5.2454 0.0425 39 1 -0.5301 -1.8945 0.7767 40 1 -0.5804 -2.2722 -0.9685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049048742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -46.259051 kcal Electronic energy + Delta-G solvation = -23165.555310 eV Core-core repulsion = 19702.421853 eV Total energy + Delta-G solvation = -3463.133458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.79102 -41.73461 -39.98429 -37.52662 -36.63766 -34.10984 -31.92664 -31.18073 -29.23447 -27.48311 -27.06333 -25.23255 -23.50508 -22.91637 -21.89060 -20.77481 -20.03222 -18.85640 -18.21757 -17.69648 -17.15213 -16.91925 -16.69291 -16.36205 -15.94823 -15.65586 -15.49039 -14.87521 -14.71275 -14.36863 -14.08894 -13.63391 -13.48121 -13.39640 -13.17196 -12.90196 -12.82578 -12.75123 -12.63895 -12.44959 -11.97451 -11.92070 -11.86353 -11.61106 -11.51501 -11.30718 -11.12503 -10.90830 -10.68658 -9.73948 -8.84368 -7.84290 -5.21692 1.33836 1.47065 1.47841 1.56964 1.82171 2.49850 2.53019 3.19211 3.32982 3.36243 3.46767 3.57758 3.62279 3.75591 3.88058 3.95543 3.97602 4.18174 4.24337 4.31797 4.51412 4.56412 4.62175 4.67183 4.70327 4.75961 4.82525 4.90443 4.91805 5.00509 5.11031 5.13978 5.20351 5.40489 5.51092 5.62525 5.77935 6.25062 6.40866 6.96748 7.11733 7.80893 8.42594 9.23968 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.004795 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.980802 B = 5838.582660 C = 6214.012861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.624 5.624 10 C 0.139 3.861 11 C -0.093 4.093 12 H 0.132 0.868 13 C 0.113 3.887 14 N -0.602 5.602 15 C 0.565 3.435 16 O -0.577 6.577 17 C -0.210 4.210 18 C 0.112 3.888 19 F -0.208 7.208 20 C -0.132 4.132 21 C -0.134 4.134 22 C 0.124 3.876 23 C -0.111 4.111 24 H 0.111 0.889 25 C 0.191 3.809 26 H 0.245 0.755 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.038 0.962 40 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -15.883 -6.104 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.014 3.986 11 C -0.112 4.112 12 H 0.150 0.850 13 C -0.009 4.009 14 N -0.333 5.333 15 C 0.354 3.646 16 O -0.457 6.457 17 C -0.214 4.214 18 C 0.056 3.944 19 F -0.189 7.189 20 C -0.170 4.170 21 C -0.171 4.171 22 C 0.001 3.999 23 C -0.131 4.131 24 H 0.129 0.871 25 C 0.065 3.935 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 0.744 -15.773 -6.097 16.926 hybrid contribution 0.004 1.660 0.032 1.661 sum 0.748 -14.113 -6.064 15.379 Atomic orbital electron populations 1.70165 1.06353 1.25117 1.58286 1.25619 0.96475 1.00973 1.02588 0.85118 0.78016 0.79459 0.77118 1.21733 1.22395 1.18960 1.19439 0.91360 0.83638 1.42326 0.89798 1.44529 1.02600 1.02377 1.85462 1.21301 0.94474 0.84176 0.98669 1.22861 0.94411 0.98971 0.94949 0.85009 1.22257 0.78621 1.02647 0.97363 1.48302 1.08504 1.56916 1.19603 1.19289 0.85495 0.76588 0.83207 1.90673 1.16177 1.57797 1.81033 1.21914 1.10036 0.93453 0.95974 1.21112 0.96927 0.93106 0.83227 1.92751 1.80982 1.87332 1.57860 1.23100 0.98519 0.92914 1.02420 1.23273 0.94416 0.95432 1.03980 1.21656 0.96240 0.96953 0.85084 1.23051 0.93724 0.96282 1.00022 0.87116 1.20973 0.84211 0.91130 0.97148 0.94532 0.94615 0.94809 0.87422 0.92803 0.89537 0.90013 0.88217 0.86244 0.85741 0.86876 0.93538 0.90359 0.94385 0.99391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.30 21.65 0.22 -56.15 16 2 C -0.06 -3.53 5.48 84.86 0.47 -3.07 16 3 Si 0.97 44.93 29.56 68.60 2.03 46.96 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.24 -12.85 10.23 84.03 0.86 -11.99 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -30.10 3.38 -697.69 -2.36 -32.46 16 10 C 0.14 4.96 6.58 86.58 0.57 5.53 16 11 C -0.09 -2.58 4.10 -9.40 -0.04 -2.62 16 12 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 13 C 0.11 2.97 5.75 86.66 0.50 3.47 16 14 N -0.60 -18.00 3.31 -817.52 -2.71 -20.70 16 15 C 0.57 17.27 7.00 87.65 0.61 17.88 16 16 O -0.58 -21.87 17.31 -3.04 -0.05 -21.92 16 17 C -0.21 -4.85 1.81 -52.93 -0.10 -4.94 16 18 C 0.11 2.53 7.63 71.98 0.55 3.08 16 19 F -0.21 -4.67 15.94 44.97 0.72 -3.95 16 20 C -0.13 -2.50 9.61 30.59 0.29 -2.20 16 21 C -0.13 -2.24 8.16 30.60 0.25 -1.99 16 22 C 0.12 4.02 6.19 86.58 0.54 4.56 16 23 C -0.11 -3.72 4.10 -9.39 -0.04 -3.76 16 24 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 25 C 0.19 8.97 4.68 86.67 0.41 9.37 16 26 H 0.25 14.29 8.31 -92.70 -0.77 13.51 16 27 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.03 1.18 7.63 -2.39 -0.02 1.16 16 29 H 0.11 2.06 6.14 -2.39 -0.01 2.05 16 30 H 0.05 1.66 7.42 -2.39 -0.02 1.65 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.94 8.00 -2.39 -0.02 1.92 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.12 1.95 7.93 -2.38 -0.02 1.94 16 35 H 0.12 1.78 7.63 -2.38 -0.02 1.76 16 36 H 0.11 1.67 7.73 -2.39 -0.02 1.65 16 37 H 0.05 1.76 7.63 -2.39 -0.02 1.74 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 2.08 6.63 -2.38 -0.02 2.06 16 40 H -0.01 -0.64 7.48 -2.39 -0.02 -0.65 16 Total: -1.00 -68.77 321.65 3.75 -65.01 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.03 Total: 9.90 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 4.87 Total: 13.32 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -4.84 Total: -109.32 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.72 Total: -3.95 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.77 3.75 -65.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049048742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.756 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds