Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99715 * 2 1 4 4 H 1.48497 * 109.47392 * 90.00306 * 3 2 1 5 5 H 1.48500 * 109.47366 * 329.99969 * 3 2 1 6 6 H 1.48509 * 109.47022 * 210.00124 * 3 2 1 7 7 C 1.38811 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99632 * 325.44272 * 7 2 1 9 9 N 1.36933 * 120.00269 * 145.44045 * 7 2 1 10 10 C 1.46541 * 119.73577 * 330.02213 * 9 7 2 11 11 C 1.52709 * 108.48705 * 236.39991 * 10 9 7 12 12 C 1.53063 * 109.28087 * 301.78986 * 11 10 9 13 13 H 1.08997 * 114.44730 * 274.93869 * 12 11 10 14 14 C 1.54082 * 111.39130 * 142.29033 * 12 11 10 15 15 N 1.47291 * 87.60458 * 273.97404 * 14 12 11 16 16 C 1.34779 * 136.53861 * 151.38726 * 15 14 12 17 17 O 1.21279 * 119.99509 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.00106 * 359.97438 * 16 15 14 19 19 C 1.53000 * 115.55087 * 34.33110 * 18 16 15 20 20 F 1.39900 * 109.46955 * 205.58201 * 19 18 16 21 21 C 1.53004 * 117.49500 * 248.61961 * 18 16 15 22 22 C 1.53000 * 59.99939 * 252.51287 * 21 18 16 23 23 C 1.46460 * 86.91572 * 331.38641 * 15 14 12 24 24 H 1.09003 * 111.43922 * 277.09750 * 23 15 14 25 25 C 1.45699 * 119.73859 * 150.29148 * 9 7 2 26 26 H 0.97003 * 119.99439 * 175.08446 * 1 2 3 27 27 H 1.09002 * 109.70912 * 356.12418 * 10 9 7 28 28 H 1.08996 * 109.71197 * 116.74766 * 10 9 7 29 29 H 1.09005 * 109.57031 * 181.79110 * 11 10 9 30 30 H 1.08999 * 109.38788 * 61.67545 * 11 10 9 31 31 H 1.08998 * 113.52606 * 159.29035 * 14 12 11 32 32 H 1.08998 * 113.59035 * 28.66860 * 14 12 11 33 33 H 1.08999 * 109.46732 * 325.57946 * 19 18 16 34 34 H 1.09000 * 109.47111 * 85.58245 * 19 18 16 35 35 H 1.08996 * 117.50235 * 0.02562 * 21 18 16 36 36 H 1.09001 * 117.49353 * 145.02464 * 21 18 16 37 37 H 1.08998 * 117.50107 * 252.51271 * 22 21 18 38 38 H 1.09003 * 117.51565 * 107.48479 * 22 21 18 39 39 H 1.09003 * 108.78744 * 260.88578 * 25 9 7 40 40 H 1.09002 * 108.78703 * 19.21626 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 1.4475 2.6527 -0.7000 6 1 3.5477 1.4402 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.6132 -2.0551 0.5297 9 7 3.1984 -1.3064 -0.6733 10 6 3.4325 -0.4882 -1.8662 11 6 3.7703 -1.4160 -3.0311 12 6 5.0022 -2.2504 -2.6719 13 1 5.9542 -1.7602 -2.8758 14 6 4.8818 -3.6899 -3.2079 15 7 4.1506 -4.0226 -1.9734 16 6 3.2014 -4.9064 -1.6065 17 8 2.7972 -4.9224 -0.4632 18 6 2.6425 -5.8747 -2.6170 19 6 3.6331 -6.3737 -3.6709 20 9 2.9364 -6.7522 -4.8235 21 6 1.1873 -5.6833 -3.0490 22 6 1.5676 -6.8527 -2.1387 23 6 4.9208 -2.9591 -1.3246 24 1 5.9036 -3.3126 -1.0126 25 6 4.2175 -2.2343 -0.2007 26 1 -0.4849 -0.8370 -0.0720 27 1 2.5347 0.0833 -2.1020 28 1 4.2655 0.1918 -1.6880 29 1 3.9792 -0.8230 -3.9215 30 1 2.9258 -2.0777 -3.2233 31 1 5.8397 -4.2023 -3.2978 32 1 4.2738 -3.7704 -4.1090 33 1 4.3350 -5.5765 -3.9160 34 1 4.1797 -7.2313 -3.2787 35 1 0.6343 -4.8568 -2.6027 36 1 0.9354 -5.9127 -4.0844 37 1 1.5658 -7.8515 -2.5752 38 1 1.2649 -6.7961 -1.0931 39 1 4.9572 -1.6793 0.3763 40 1 3.7466 -2.9714 0.4497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084650007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = 18.580391 kcal Electronic energy + Delta-G solvation = -23794.644053 eV Core-core repulsion = 20334.322244 eV Total energy + Delta-G solvation = -3460.321808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.87670 -40.92514 -38.69765 -36.02556 -35.53816 -32.05285 -31.10045 -29.78234 -27.77867 -27.14109 -23.91167 -23.36557 -22.47501 -22.30214 -21.02482 -19.55219 -18.02294 -17.46172 -16.70579 -16.31996 -16.09405 -15.67392 -15.30205 -15.11535 -14.63636 -14.07564 -13.78552 -13.68933 -13.39384 -13.11932 -12.94767 -12.74874 -12.09105 -11.94674 -11.79722 -11.74285 -11.40195 -11.27227 -11.14797 -10.88395 -10.53563 -10.50619 -10.18599 -10.04907 -9.78847 -9.56253 -9.26759 -9.14630 -8.45537 -8.19671 -6.88616 -6.27711 -3.17611 2.71354 2.93205 3.53877 3.60949 3.74285 3.74651 4.27206 4.36335 4.38799 4.55418 4.71272 4.73127 4.82404 4.98438 5.00781 5.13470 5.22330 5.31785 5.36540 5.48911 5.54376 5.59781 5.64508 5.70625 5.82900 5.91345 5.96200 6.01524 6.17045 6.25090 6.35078 6.41563 6.64082 6.79594 6.83350 7.01981 8.01684 8.25833 8.46734 8.56762 9.15181 9.75004 10.30851 11.12824 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.006180 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.356440 B = 4529.937117 C = 5031.248106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 1.019 2.981 4 H -0.299 1.299 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.353 4.353 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.120 4.120 12 C -0.109 4.109 13 H 0.096 0.904 14 C 0.088 3.912 15 N -0.630 5.630 16 C 0.586 3.414 17 O -0.520 6.520 18 C -0.202 4.202 19 C 0.094 3.906 20 F -0.211 7.211 21 C -0.137 4.137 22 C -0.138 4.138 23 C 0.127 3.873 24 H 0.079 0.921 25 C 0.141 3.859 26 H 0.266 0.734 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.021 0.979 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.520 -10.564 -10.588 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.202 4.202 3 Si 0.848 3.152 4 H -0.227 1.227 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.481 4.481 8 H 0.080 0.920 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.159 4.159 12 C -0.128 4.128 13 H 0.114 0.886 14 C -0.035 4.035 15 N -0.365 5.365 16 C 0.374 3.626 17 O -0.395 6.395 18 C -0.206 4.206 19 C 0.039 3.961 20 F -0.192 7.192 21 C -0.174 4.174 22 C -0.175 4.175 23 C 0.023 3.977 24 H 0.096 0.904 25 C 0.014 3.986 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.039 0.961 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.896 -9.137 -9.818 17.280 hybrid contribution 0.306 -1.749 -0.110 1.779 sum 11.202 -10.886 -9.929 18.509 Atomic orbital electron populations 1.70874 1.06954 1.29664 1.46570 1.26135 0.95983 1.00690 0.97434 0.84608 0.76467 0.77259 0.76839 1.22719 1.22214 1.19572 1.20094 0.96657 0.97606 1.33704 0.91977 1.43745 1.15564 1.45141 1.26821 1.21185 0.99138 0.92139 0.85675 1.21851 0.95646 0.99051 0.99373 1.22805 1.00244 0.94031 0.95766 0.88571 1.23444 0.95664 0.95031 0.89396 1.49299 1.37889 1.35019 1.14337 1.18454 0.78177 0.78730 0.87204 1.90731 1.58923 1.70025 1.19826 1.22103 0.93220 1.04037 1.01192 1.21614 0.92483 1.01127 0.80849 1.92750 1.81612 1.93129 1.51715 1.23067 0.92050 1.01163 1.01142 1.23036 0.98524 0.94319 1.01608 1.22376 0.93575 0.85640 0.96135 0.90367 1.20312 0.91873 0.93204 0.93186 0.92454 0.91404 0.95121 0.92253 0.91774 0.90031 0.90367 0.89344 0.90153 0.87503 0.87220 0.87962 0.87048 0.96145 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.42 13.70 55.49 0.76 -27.66 16 2 C 0.00 0.02 4.81 -17.43 -0.08 -0.06 16 3 Si 1.02 25.54 26.95 -169.99 -4.58 20.95 16 4 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.08 4.73 56.52 0.27 -5.82 16 7 C -0.35 -10.27 9.62 -15.06 -0.14 -10.41 16 8 H 0.06 2.04 8.02 -52.48 -0.42 1.62 16 9 N -0.59 -14.36 2.71 -175.16 -0.47 -14.83 16 10 C 0.14 3.08 4.27 -4.17 -0.02 3.06 16 11 C -0.12 -2.01 5.68 -26.85 -0.15 -2.16 16 12 C -0.11 -1.49 4.57 -90.31 -0.41 -1.90 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 14 C 0.09 1.02 5.44 -11.53 -0.06 0.95 16 15 N -0.63 -10.12 3.29 -187.69 -0.62 -10.73 16 16 C 0.59 10.64 7.58 -10.98 -0.08 10.56 16 17 O -0.52 -11.81 15.50 5.56 0.09 -11.72 16 18 C -0.20 -2.89 2.59 -155.66 -0.40 -3.29 16 19 C 0.09 1.04 7.57 37.16 0.28 1.32 16 20 F -0.21 -2.55 15.94 2.25 0.04 -2.51 16 21 C -0.14 -1.95 9.62 -26.73 -0.26 -2.21 16 22 C -0.14 -1.84 9.73 -26.73 -0.26 -2.10 16 23 C 0.13 2.05 4.03 -77.68 -0.31 1.74 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 25 C 0.14 3.00 6.16 -5.43 -0.03 2.96 16 26 H 0.27 8.40 8.73 -40.82 -0.36 8.05 16 27 H 0.07 1.59 5.66 -51.93 -0.29 1.30 16 28 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 31 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.08 0.86 7.22 -51.93 -0.37 0.48 16 33 H 0.09 0.88 4.12 -51.93 -0.21 0.66 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.11 1.38 7.22 -51.93 -0.38 1.00 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.67 7.67 -51.93 -0.40 1.27 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.77 6.46 -51.93 -0.34 1.44 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -34.31 313.25 -7.84 -42.14 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.82 Total: 1.18 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.94 Total: -1.54 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.33 Total: -53.23 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -4.58 Total: 20.95 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.31 -7.84 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084650007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.722 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds