Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47077 * 265.44910 * 3 2 1 5 5 H 1.48499 * 109.46948 * 25.44430 * 3 2 1 6 6 H 1.48496 * 109.47096 * 145.44264 * 3 2 1 7 7 C 1.38813 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00259 * 341.88959 * 7 2 1 9 9 N 1.36936 * 119.99842 * 161.88695 * 7 2 1 10 10 C 1.48148 * 127.83819 * 160.50803 * 9 7 2 11 11 C 1.54389 * 104.61916 * 140.41528 * 10 9 7 12 12 H 1.09004 * 117.61504 * 244.78081 * 11 10 9 13 13 C 1.54284 * 104.95987 * 23.86522 * 11 10 9 14 14 H 1.08994 * 121.81912 * 223.07559 * 13 11 10 15 15 C 1.48147 * 127.83872 * 340.50825 * 9 7 2 16 16 C 1.53004 * 61.49738 * 114.20965 * 13 11 10 17 17 H 1.09002 * 117.43962 * 251.43208 * 16 13 11 18 18 N 1.46504 * 117.44178 * 106.68978 * 16 13 11 19 19 C 1.34773 * 120.00117 * 154.99903 * 18 16 13 20 20 O 1.21278 * 119.99726 * 5.06595 * 19 18 16 21 21 C 1.50696 * 120.00042 * 185.06925 * 19 18 16 22 22 C 1.52998 * 115.55074 * 302.30805 * 21 19 18 23 23 C 1.53005 * 109.47039 * 294.79827 * 22 21 19 24 24 F 1.39891 * 109.47297 * 185.06003 * 23 22 21 25 25 C 1.53002 * 117.49746 * 156.63660 * 21 19 18 26 26 C 1.52998 * 117.50069 * 87.97481 * 21 19 18 27 27 H 0.97003 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.09009 * 110.40718 * 259.20129 * 10 9 7 29 29 H 1.09003 * 110.40816 * 21.62834 * 10 9 7 30 30 H 1.08995 * 110.40586 * 338.36761 * 15 9 7 31 31 H 1.08999 * 110.40699 * 100.79966 * 15 9 7 32 32 H 0.97000 * 119.99651 * 335.00526 * 18 16 13 33 33 H 1.08994 * 109.47215 * 54.79489 * 22 21 19 34 34 H 1.08996 * 109.47552 * 174.79617 * 22 21 19 35 35 H 1.09002 * 109.46801 * 305.06224 * 23 22 21 36 36 H 1.08995 * 109.47055 * 65.05502 * 23 22 21 37 37 H 1.08994 * 117.50199 * 359.97438 * 25 21 19 38 38 H 1.08998 * 117.49689 * 145.02314 * 25 21 19 39 39 H 1.08999 * 117.50482 * 214.98195 * 26 21 19 40 40 H 1.09004 * 117.49702 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5938 1.9908 -1.3956 5 1 1.4027 2.6785 0.6015 6 1 3.4962 1.4698 0.7941 7 6 2.0102 -1.2022 -0.0005 8 1 1.5104 -2.1144 0.2898 9 7 3.3287 -1.2314 -0.3692 10 6 4.3325 -2.2796 -0.0719 11 6 5.1594 -2.4064 -1.3695 12 1 5.1088 -3.3514 -1.9105 13 6 4.9896 -1.0498 -2.0843 14 1 4.8125 -0.9840 -3.1577 15 6 4.0749 -0.2219 -1.1560 16 6 6.3783 -1.4358 -1.5710 17 1 6.7616 -0.8962 -0.7050 18 7 7.3807 -1.8273 -2.5651 19 6 8.6928 -1.6914 -2.2887 20 8 9.0460 -1.3324 -1.1855 21 6 9.7209 -1.9856 -3.3505 22 6 9.6741 -3.3960 -3.9416 23 6 10.0254 -4.4157 -2.8564 24 9 10.0957 -5.6932 -3.4220 25 6 11.0934 -1.3248 -3.2072 26 6 10.1193 -0.8411 -4.2844 27 1 -0.4851 0.8401 -0.0004 28 1 4.9702 -1.9711 0.7566 29 1 3.8391 -3.2239 0.1583 30 1 3.3872 0.3861 -1.7437 31 1 4.6723 0.4079 -0.4968 32 1 7.1000 -2.1842 -3.4223 33 1 8.6721 -3.5985 -4.3196 34 1 10.3925 -3.4720 -4.7578 35 1 10.9890 -4.1599 -2.4157 36 1 9.2574 -4.4025 -2.0831 37 1 11.2526 -0.6770 -2.3452 38 1 11.9630 -1.8948 -3.5344 39 1 10.3485 -1.0930 -5.3199 40 1 9.6381 0.1247 -4.1306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114605092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -1.566306 kcal Electronic energy + Delta-G solvation = -22060.394303 eV Core-core repulsion = 18599.198868 eV Total energy + Delta-G solvation = -3461.195435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.89584 -40.48685 -38.88888 -37.05336 -34.71786 -32.71927 -31.60686 -30.75293 -27.82676 -26.12362 -24.68348 -23.41177 -22.74086 -21.51811 -20.76292 -19.64718 -19.56037 -17.43705 -16.98898 -16.64918 -16.35395 -16.20328 -15.42030 -15.23501 -14.98920 -14.68347 -14.17804 -13.70801 -13.61179 -13.20737 -13.04984 -12.69653 -12.53092 -12.24743 -11.98791 -11.91189 -11.73943 -11.26592 -11.18710 -11.07780 -10.90868 -10.75652 -10.48751 -10.25723 -10.15624 -9.93709 -9.62516 -9.39948 -8.83683 -8.56828 -7.16602 -5.97618 -3.31441 2.28601 2.79510 3.24467 3.29312 3.45576 3.47284 3.94593 3.96471 4.26562 4.31574 4.36417 4.49979 4.57808 4.71732 4.73861 4.80567 4.99634 5.05429 5.09774 5.21530 5.26693 5.34044 5.41115 5.49066 5.52786 5.62490 5.68501 5.71064 5.73859 5.96470 6.19520 6.44495 6.49514 6.52352 6.61835 6.74039 7.35665 7.55478 8.04870 8.27577 8.73738 9.61706 10.15646 11.18516 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.003718 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.577421 B = 7528.244843 C = 8130.484715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.238 4.238 8 H 0.095 0.905 9 N -0.604 5.604 10 C 0.156 3.844 11 C -0.177 4.177 12 H 0.111 0.889 13 C -0.171 4.171 14 H 0.108 0.892 15 C 0.130 3.870 16 C 0.096 3.904 17 H 0.135 0.865 18 N -0.692 5.692 19 C 0.551 3.449 20 O -0.531 6.531 21 C -0.164 4.164 22 C -0.108 4.108 23 C 0.061 3.939 24 F -0.218 7.218 25 C -0.143 4.143 26 C -0.150 4.150 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.401 0.599 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.029 -4.876 -10.683 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.113 0.887 9 N -0.328 5.328 10 C 0.030 3.970 11 C -0.198 4.198 12 H 0.129 0.871 13 C -0.192 4.192 14 H 0.126 0.874 15 C 0.005 3.995 16 C -0.010 4.010 17 H 0.153 0.847 18 N -0.340 5.340 19 C 0.336 3.664 20 O -0.407 6.407 21 C -0.168 4.168 22 C -0.146 4.146 23 C 0.006 3.994 24 F -0.199 7.199 25 C -0.180 4.180 26 C -0.187 4.187 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.235 0.765 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 21.957 -4.534 -9.819 24.476 hybrid contribution 0.104 0.708 -0.638 0.959 sum 22.061 -3.826 -10.457 24.711 Atomic orbital electron populations 1.69783 1.05472 1.26658 1.53648 1.25017 0.95256 0.97482 1.00029 0.86926 0.79462 0.84506 0.77549 1.21326 1.22883 1.19647 1.18661 0.81674 0.95206 1.40880 0.88707 1.45545 1.06933 1.20741 1.59604 1.21142 0.89984 0.93747 0.92100 1.25058 0.99315 0.94202 1.01275 0.87073 1.24310 0.95331 0.99730 0.99851 0.87371 1.21654 0.93111 0.92332 0.92449 1.22548 0.82766 1.01612 0.94075 0.84706 1.45301 1.05041 1.64776 1.18849 1.19411 0.82341 0.76938 0.87686 1.90723 1.80518 1.46463 1.23028 1.21341 0.98475 0.95365 1.01603 1.21650 1.04107 0.90604 0.98250 1.21966 1.03875 0.77851 0.95738 1.92770 1.98017 1.41932 1.87173 1.23070 0.91230 1.02395 1.01303 1.23115 1.02423 0.96976 0.96166 0.92590 0.94853 0.91903 0.90952 0.94665 0.76466 0.89932 0.89468 0.90285 0.90568 0.87314 0.87711 0.87533 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 13.97 55.49 0.78 -27.28 16 2 C 0.02 0.60 5.47 -17.43 -0.10 0.50 16 3 Si 0.89 22.50 24.52 -169.99 -4.17 18.34 16 4 H -0.29 -6.95 6.35 56.52 0.36 -6.59 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.80 6.48 56.52 0.37 -6.44 16 7 C -0.24 -6.71 10.76 -15.06 -0.16 -6.88 16 8 H 0.10 2.83 8.06 -52.49 -0.42 2.40 16 9 N -0.60 -14.55 3.18 -168.85 -0.54 -15.08 16 10 C 0.16 3.07 7.06 -2.41 -0.02 3.06 16 11 C -0.18 -2.85 7.23 -86.99 -0.63 -3.48 16 12 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 13 C -0.17 -2.86 6.91 -89.22 -0.62 -3.47 16 14 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 15 C 0.13 2.80 4.49 -2.41 -0.01 2.79 16 16 C 0.10 1.43 6.18 -65.69 -0.41 1.02 16 17 H 0.14 2.28 7.43 -51.93 -0.39 1.89 16 18 N -0.69 -8.04 5.56 -51.65 -0.29 -8.33 16 19 C 0.55 6.68 6.62 -10.99 -0.07 6.61 16 20 O -0.53 -8.58 16.11 5.56 0.09 -8.49 16 21 C -0.16 -1.36 1.91 -155.66 -0.30 -1.66 16 22 C -0.11 -0.74 5.51 -26.73 -0.15 -0.89 16 23 C 0.06 0.50 7.35 37.16 0.27 0.78 16 24 F -0.22 -2.25 17.36 2.25 0.04 -2.21 16 25 C -0.14 -1.05 9.77 -26.69 -0.26 -1.31 16 26 C -0.15 -1.00 9.93 -26.69 -0.26 -1.27 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.67 5.22 -51.93 -0.27 1.40 16 31 H 0.04 0.77 6.85 -51.93 -0.36 0.42 16 32 H 0.40 3.63 8.42 -40.82 -0.34 3.28 16 33 H 0.08 0.52 7.75 -51.93 -0.40 0.12 16 34 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 37 H 0.11 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -32.94 330.84 -7.82 -40.77 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.01 Total: 1.50 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.71 Total: -4.20 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.05 Total: -50.69 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.17 Total: 18.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.94 -7.82 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114605092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.201 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds