Wall clock time and date at job start Tue Mar 31 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34755 * 116.99256 * 90.00448 * 13 3 2 15 15 O 1.21518 * 120.00839 * 359.97438 * 14 13 3 16 16 C 1.47296 * 119.99494 * 179.97438 * 14 13 3 17 17 C 1.38121 * 126.42413 * 359.68629 * 16 14 13 18 18 N 1.34229 * 107.40403 * 179.83384 * 17 16 14 19 19 C 1.46504 * 125.73920 * 180.15909 * 18 17 16 20 20 N 1.39924 * 108.51325 * 0.43318 * 18 17 16 21 21 C 1.30423 * 108.91889 * 359.72364 * 20 18 17 22 22 C 1.50707 * 125.99629 * 179.97438 * 21 20 18 23 23 O 1.42904 * 109.47065 * 270.02945 * 22 21 20 24 24 C 1.42901 * 113.99659 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 1.08001 * 126.30290 * 0.02562 * 17 16 14 32 32 H 1.09001 * 109.46920 * 270.28994 * 19 18 17 33 33 H 1.08994 * 109.47154 * 30.29328 * 19 18 17 34 34 H 1.09007 * 109.46791 * 150.29353 * 19 18 17 35 35 H 1.08999 * 109.46643 * 30.02341 * 22 21 20 36 36 H 1.08997 * 109.47103 * 150.02377 * 22 21 20 37 37 H 1.09000 * 109.46882 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.47223 * 300.00110 * 24 23 22 39 39 H 1.09002 * 109.47228 * 59.99751 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 8 1.6560 2.0916 -1.2408 14 6 0.4682 2.7279 -1.2560 15 8 -0.2278 2.7396 -0.2599 16 6 0.0136 3.4093 -2.4801 17 6 0.6962 3.4847 -3.6785 18 7 -0.0655 4.1883 -4.5309 19 6 0.2748 4.5067 -5.9198 20 7 -1.2364 4.5718 -3.8676 21 6 -1.2003 4.1139 -2.6470 22 6 -2.2657 4.3034 -1.5980 23 8 -1.9999 5.4975 -0.8594 24 6 -2.9568 5.7719 0.1659 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 5.8763 0.4948 2.1200 31 1 1.6633 3.0539 -3.8917 32 1 0.8182 5.4510 -5.9534 33 1 0.8986 3.7136 -6.3319 34 1 -0.6393 4.5924 -6.5074 35 1 -3.2399 4.3837 -2.0801 36 1 -2.2647 3.4494 -0.9207 37 1 -2.6847 6.6940 0.6794 38 1 -3.9452 5.8827 -0.2800 39 1 -2.9705 4.9483 0.8798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122897294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:12 Heat of formation + Delta-G solvation = -48.043275 kcal Electronic energy + Delta-G solvation = -22755.133831 eV Core-core repulsion = 19279.550214 eV Total energy + Delta-G solvation = -3475.583617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41742 -39.30316 -37.68293 -35.82252 -33.66915 -33.52160 -31.89871 -30.56492 -28.98500 -27.76785 -26.58470 -25.21343 -23.19855 -22.47462 -21.12595 -19.96507 -19.48639 -17.64141 -16.64527 -16.49619 -16.35462 -15.68331 -15.61975 -15.47605 -15.23423 -14.99516 -14.32475 -13.70163 -13.38706 -13.13757 -12.88214 -12.76952 -12.32437 -12.31657 -12.09551 -11.92000 -11.62682 -11.39742 -11.36940 -11.19357 -10.94142 -10.69622 -10.01901 -9.90411 -9.57754 -9.54401 -9.54101 -9.35470 -9.02303 -8.68816 -8.60398 -6.20101 -4.21749 1.54179 1.97857 2.23684 3.21022 3.33574 3.37117 3.57464 3.71514 4.04947 4.29657 4.35030 4.74208 4.84487 4.91950 5.10164 5.10741 5.16644 5.29540 5.42164 5.50191 5.55291 5.71610 5.72613 5.82753 5.88911 5.98615 6.08078 6.32751 6.53253 6.61039 6.71612 6.76555 6.80281 7.13037 7.17458 7.44064 7.49594 7.60385 8.31048 8.72540 8.88544 9.37730 10.91990 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.005302 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.954890 B = 5279.998592 C = 6157.155834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.199 3.801 4 H 0.047 0.953 5 C -0.523 4.523 6 H 0.086 0.914 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.259 1.259 13 O -0.341 6.341 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.255 4.255 17 C 0.125 3.875 18 N -0.363 5.363 19 C 0.098 3.902 20 N -0.286 5.286 21 C 0.131 3.869 22 C 0.141 3.859 23 O -0.380 6.380 24 C 0.035 3.965 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.197 0.803 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 5.257 -11.016 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.145 3.855 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.104 0.896 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.705 3.295 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.184 1.184 13 O -0.257 6.257 14 C 0.377 3.623 15 O -0.408 6.408 16 C -0.268 4.268 17 C -0.026 4.026 18 N -0.142 5.142 19 C -0.043 4.043 20 N -0.109 5.109 21 C -0.037 4.037 22 C 0.063 3.937 23 O -0.298 6.298 24 C -0.061 4.061 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.213 0.787 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.269 6.007 -11.633 19.366 hybrid contribution -0.035 -1.121 1.382 1.780 sum -14.304 4.886 -10.251 18.264 Atomic orbital electron populations 1.21894 0.96984 0.99846 1.01916 1.22347 0.94391 0.99659 1.02046 1.20936 0.96148 0.87977 0.80453 0.93486 1.20799 0.87812 1.39797 1.07645 0.89575 1.24726 0.94923 0.95323 0.97351 1.69837 1.08526 1.44589 1.29724 0.87003 0.81137 0.80078 0.81267 1.19991 1.21767 1.18384 1.86533 1.34071 1.62751 1.42327 1.19837 0.80402 0.75912 0.86145 1.90732 1.55734 1.59507 1.34867 1.19557 0.98408 1.14152 0.94711 1.23371 0.97258 0.92868 0.89086 1.48303 1.14005 1.40415 1.11514 1.22008 1.02832 1.02787 0.76661 1.77097 1.04071 1.22683 1.07095 1.21911 0.94736 0.94668 0.92381 1.20699 0.92835 0.89717 0.90442 1.87915 1.50896 1.42037 1.48965 1.22726 0.91606 1.01479 0.90323 0.92509 0.93443 0.94119 0.91345 0.91928 0.92130 0.78658 0.90116 0.88789 0.88946 0.92102 0.89167 0.89605 0.94302 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.56 37.16 0.32 -2.63 16 2 C -0.15 -3.32 5.15 -26.73 -0.14 -3.46 16 3 C 0.20 5.00 1.84 -27.88 -0.05 4.94 16 4 H 0.05 1.26 6.21 -51.93 -0.32 0.94 16 5 C -0.52 -14.91 9.48 -34.44 -0.33 -15.23 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.88 21.66 24.41 -169.99 -4.15 17.51 16 10 H -0.27 -6.47 6.84 56.52 0.39 -6.08 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.32 6.52 56.52 0.37 -5.95 16 13 O -0.34 -7.80 9.63 -40.64 -0.39 -8.19 16 14 C 0.53 11.15 6.40 34.41 0.22 11.37 16 15 O -0.52 -11.54 12.10 -19.28 -0.23 -11.77 16 16 C -0.26 -4.49 6.13 -105.08 -0.64 -5.13 16 17 C 0.12 1.74 11.33 -16.55 -0.19 1.55 16 18 N -0.36 -4.54 3.98 -67.58 -0.27 -4.81 16 19 C 0.10 0.67 11.44 59.85 0.68 1.36 16 20 N -0.29 -4.38 12.50 33.90 0.42 -3.96 16 21 C 0.13 2.17 6.90 -82.01 -0.57 1.60 16 22 C 0.14 2.14 5.97 36.01 0.21 2.36 16 23 O -0.38 -6.16 10.69 -35.23 -0.38 -6.53 16 24 C 0.04 0.41 11.01 101.05 1.11 1.53 16 25 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 26 H 0.05 0.92 6.06 -51.93 -0.31 0.60 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.06 1.46 3.24 -51.93 -0.17 1.30 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.42 6.55 -51.93 -0.34 1.08 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -34.75 324.94 -4.17 -38.92 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.38 Total: -0.56 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.54 Total: 0.44 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.93 Total: -34.71 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.00 Total: -26.50 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.15 Total: 17.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.75 -4.17 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122897294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.124 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds