Wall clock time and date at job start Tue Mar 31 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34755 * 116.99256 * 90.00448 * 13 3 2 15 15 O 1.21518 * 120.00839 * 359.97438 * 14 13 3 16 16 C 1.47296 * 119.99494 * 179.97438 * 14 13 3 17 17 C 1.38121 * 126.42413 * 359.68629 * 16 14 13 18 18 N 1.34229 * 107.40403 * 179.83384 * 17 16 14 19 19 C 1.46504 * 125.73920 * 180.15909 * 18 17 16 20 20 N 1.39924 * 108.51325 * 0.43318 * 18 17 16 21 21 C 1.30423 * 108.91889 * 359.72364 * 20 18 17 22 22 C 1.50707 * 125.99629 * 179.97438 * 21 20 18 23 23 O 1.42904 * 109.47065 * 270.02945 * 22 21 20 24 24 C 1.42901 * 113.99659 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 1.08001 * 126.30290 * 0.02562 * 17 16 14 32 32 H 1.09001 * 109.46920 * 270.28994 * 19 18 17 33 33 H 1.08994 * 109.47154 * 30.29328 * 19 18 17 34 34 H 1.09007 * 109.46791 * 150.29353 * 19 18 17 35 35 H 1.08999 * 109.46643 * 30.02341 * 22 21 20 36 36 H 1.08997 * 109.47103 * 150.02377 * 22 21 20 37 37 H 1.09000 * 109.46882 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.47223 * 300.00110 * 24 23 22 39 39 H 1.09002 * 109.47228 * 59.99751 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 8 1.6560 2.0916 -1.2408 14 6 0.4682 2.7279 -1.2560 15 8 -0.2278 2.7396 -0.2599 16 6 0.0136 3.4093 -2.4801 17 6 0.6962 3.4847 -3.6785 18 7 -0.0655 4.1883 -4.5309 19 6 0.2748 4.5067 -5.9198 20 7 -1.2364 4.5718 -3.8676 21 6 -1.2003 4.1139 -2.6470 22 6 -2.2657 4.3034 -1.5980 23 8 -1.9999 5.4975 -0.8594 24 6 -2.9568 5.7719 0.1659 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 5.8763 0.4948 2.1200 31 1 1.6633 3.0539 -3.8917 32 1 0.8182 5.4510 -5.9534 33 1 0.8986 3.7136 -6.3319 34 1 -0.6393 4.5924 -6.5074 35 1 -3.2399 4.3837 -2.0801 36 1 -2.2647 3.4494 -0.9207 37 1 -2.6847 6.6940 0.6794 38 1 -3.9452 5.8827 -0.2800 39 1 -2.9705 4.9483 0.8798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122897294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:09 Heat of formation + Delta-G solvation = -72.816844 kcal Electronic energy + Delta-G solvation = -22756.208093 eV Core-core repulsion = 19279.550214 eV Total energy + Delta-G solvation = -3476.657879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.58026 -40.97370 -38.79906 -37.56079 -35.45294 -34.67004 -33.89547 -31.78216 -29.95641 -29.69294 -27.54434 -26.34670 -24.92517 -23.98003 -22.57889 -21.48633 -20.84933 -19.32220 -18.32855 -18.07467 -17.64080 -17.21642 -16.84208 -16.69182 -16.40770 -16.21697 -15.92996 -15.25263 -14.91968 -14.57071 -14.14191 -13.89853 -13.71688 -13.58210 -13.45982 -13.25560 -13.11446 -13.10226 -13.06144 -12.54518 -12.36831 -12.08970 -11.98971 -11.55193 -11.46806 -11.24403 -11.08148 -10.69460 -10.61953 -10.60547 -9.87192 -8.41692 -6.49153 0.34575 0.73281 1.25017 1.28931 1.33376 1.43127 2.04485 2.17165 2.22571 2.91117 2.95611 3.32470 3.68228 3.95347 4.06110 4.15006 4.18874 4.23108 4.37009 4.38742 4.43884 4.47120 4.51983 4.57946 4.64703 4.71306 4.75324 4.83553 4.96955 5.01138 5.09537 5.14318 5.38702 5.40918 5.72733 5.77985 6.13432 6.21099 6.35442 6.54515 7.02440 7.17442 8.74063 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.005302 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.954890 B = 5279.998592 C = 6157.155834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.144 4.144 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.536 4.536 6 H 0.049 0.951 7 C 0.032 3.968 8 N -0.930 5.930 9 Si 0.934 3.066 10 H -0.250 1.250 11 H -0.285 1.285 12 H -0.256 1.256 13 O -0.349 6.349 14 C 0.531 3.469 15 O -0.538 6.538 16 C -0.296 4.296 17 C 0.143 3.857 18 N -0.349 5.349 19 C 0.084 3.916 20 N -0.296 5.296 21 C 0.120 3.880 22 C 0.141 3.859 23 O -0.411 6.411 24 C 0.029 3.971 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.274 0.726 31 H 0.222 0.778 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.382 4.816 -12.208 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.149 3.851 4 H 0.045 0.955 5 C -0.573 4.573 6 H 0.067 0.933 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.760 3.240 10 H -0.175 1.175 11 H -0.212 1.212 12 H -0.181 1.181 13 O -0.265 6.265 14 C 0.377 3.623 15 O -0.430 6.430 16 C -0.309 4.309 17 C -0.010 4.010 18 N -0.127 5.127 19 C -0.054 4.054 20 N -0.120 5.120 21 C -0.048 4.048 22 C 0.063 3.937 23 O -0.330 6.330 24 C -0.067 4.067 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.239 0.761 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.885 5.585 -12.871 21.194 hybrid contribution 0.507 -0.844 1.573 1.856 sum -15.377 4.742 -11.298 19.662 Atomic orbital electron populations 1.21795 0.94628 1.01824 1.01423 1.22246 0.96430 0.97391 1.02105 1.20625 0.93860 0.89707 0.80916 0.95508 1.20980 0.89660 1.39672 1.07037 0.93281 1.25507 0.96010 0.95659 0.99555 1.69953 1.10312 1.45753 1.30872 0.86059 0.79392 0.80363 0.78213 1.17483 1.21219 1.18083 1.86508 1.35601 1.63392 1.41030 1.20354 0.79353 0.75384 0.87223 1.90707 1.55999 1.60329 1.35966 1.19509 1.00131 1.16530 0.94774 1.23692 0.97569 0.91618 0.88089 1.48785 1.12613 1.38443 1.12876 1.22559 1.04339 1.04822 0.73712 1.77051 1.05435 1.22807 1.06666 1.22122 0.94811 0.94720 0.93105 1.20725 0.93751 0.89021 0.90164 1.87862 1.52771 1.42318 1.50032 1.22939 0.92199 1.01834 0.89690 0.93497 0.93516 0.90797 0.90671 0.92390 0.91643 0.76120 0.88543 0.85628 0.87602 0.89587 0.90538 0.88449 0.91745 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.56 71.98 0.62 -4.66 16 2 C -0.14 -6.37 5.15 30.59 0.16 -6.22 16 3 C 0.20 10.35 1.84 29.85 0.05 10.41 16 4 H 0.03 1.48 6.21 -2.39 -0.01 1.46 16 5 C -0.54 -31.44 9.48 25.60 0.24 -31.20 16 6 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 7 C 0.03 1.88 5.45 84.66 0.46 2.34 16 8 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 9 Si 0.93 44.48 24.41 68.60 1.67 46.16 16 10 H -0.25 -10.91 6.84 99.48 0.68 -10.23 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -12.03 6.52 99.48 0.65 -11.38 16 13 O -0.35 -16.22 9.63 -56.66 -0.55 -16.77 16 14 C 0.53 22.48 6.40 70.20 0.45 22.93 16 15 O -0.54 -24.44 12.10 19.78 0.24 -24.20 16 16 C -0.30 -10.32 6.13 -20.16 -0.12 -10.44 16 17 C 0.14 3.75 11.33 84.30 0.96 4.71 16 18 N -0.35 -7.87 3.98 -367.72 -1.46 -9.33 16 19 C 0.08 0.85 11.44 127.77 1.46 2.31 16 20 N -0.30 -8.57 12.50 -46.65 -0.58 -9.15 16 21 C 0.12 3.90 6.90 43.53 0.30 4.20 16 22 C 0.14 4.24 5.97 71.24 0.43 4.67 16 23 O -0.41 -13.25 10.69 -148.98 -1.59 -14.84 16 24 C 0.03 0.66 11.01 113.37 1.25 1.91 16 25 H 0.05 1.85 7.79 -2.39 -0.02 1.83 16 26 H 0.05 1.76 6.06 -2.39 -0.01 1.74 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.06 2.60 3.24 -2.39 -0.01 2.59 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.22 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.46 6.55 -2.39 -0.02 2.44 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -77.30 324.94 5.25 -72.05 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.97 Total: 11.79 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 6.25 Total: 0.96 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.75 Total: -75.14 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.90 Total: -55.81 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.16 kcal Total: -77.30 5.25 -72.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122897294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.769 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds