Wall clock time and date at job start Tue Mar 31 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38220 * 119.61747 * 2 1 4 4 C 1.38634 * 119.16444 * 179.97438 * 3 2 1 5 5 C 1.38674 * 118.41352 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.41201 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47463 * 89.32699 * 6 5 4 8 8 C 1.36936 * 119.99903 * 271.69552 * 7 6 5 9 9 H 1.08002 * 120.00226 * 342.93134 * 8 7 6 10 10 C 1.38814 * 120.00359 * 162.92615 * 8 7 6 11 11 N 1.31617 * 119.99754 * 42.52210 * 10 8 7 12 12 Si 1.86798 * 120.00098 * 222.52459 * 10 8 7 13 13 H 1.48496 * 109.47328 * 60.00112 * 12 10 8 14 14 H 1.48507 * 109.46909 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47318 * 299.99689 * 12 10 8 16 16 C 1.46499 * 120.00212 * 91.69500 * 7 6 5 17 17 C 1.50697 * 109.47063 * 83.44660 * 16 7 6 18 18 C 1.38233 * 120.00229 * 66.12183 * 17 16 7 19 19 C 1.38235 * 120.00129 * 179.97438 * 18 17 16 20 20 C 1.38231 * 120.00163 * 0.09105 * 19 18 17 21 21 C 1.38236 * 119.99667 * 359.86018 * 20 19 18 22 22 C 1.38231 * 119.99913 * 246.09786 * 17 16 7 23 23 C 1.38179 * 119.16433 * 0.27146 * 5 4 3 24 24 N 1.31853 * 119.61934 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46817 * 90.00672 * 1 2 3 26 26 H 1.09000 * 109.47692 * 209.99890 * 1 2 3 27 27 H 1.08998 * 109.47656 * 330.01119 * 1 2 3 28 28 H 1.08006 * 120.42213 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.79262 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47340 * 329.32103 * 6 5 4 31 31 H 1.09006 * 109.46913 * 209.32429 * 6 5 4 32 32 H 0.97000 * 119.99962 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47416 * 323.44564 * 16 7 6 34 34 H 1.09002 * 109.46768 * 203.44315 * 16 7 6 35 35 H 1.08000 * 120.00166 * 359.69487 * 18 17 16 36 36 H 1.08007 * 120.00073 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.00157 * 179.97438 * 20 19 18 38 38 H 1.08005 * 119.99562 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.00195 * 359.97438 * 22 17 16 40 40 H 1.08000 * 119.61406 * 179.70934 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1907 0.0005 5 6 4.2266 -0.0342 0.0005 6 6 5.7321 -0.0987 0.0017 7 7 6.2197 -0.1040 1.3831 8 6 6.4652 1.0794 2.0271 9 1 6.5698 1.9918 1.4588 10 6 6.5796 1.1062 3.4102 11 7 7.2577 0.1656 4.0328 12 14 5.7710 2.4773 4.3878 13 1 4.3054 2.4575 4.1494 14 1 6.0393 2.2782 5.8348 15 1 6.3250 3.7859 3.9566 16 6 6.4446 -1.3752 2.0757 17 6 7.8046 -1.9121 1.7111 18 6 8.9435 -1.2349 2.1051 19 6 10.1911 -1.7277 1.7711 20 6 10.2998 -2.8967 1.0414 21 6 9.1609 -3.5745 0.6482 22 6 7.9134 -3.0821 0.9830 23 6 3.4765 -1.1947 -0.0058 24 7 2.1586 -1.1462 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5136 28 1 1.6507 2.1373 -0.0004 29 1 4.1365 2.1139 0.0001 30 1 6.1334 0.7690 -0.5220 31 1 6.0572 -1.0092 -0.5018 32 1 7.3379 0.1845 4.9993 33 1 5.6792 -2.0917 1.7777 34 1 6.3936 -1.2160 3.1528 35 1 8.8586 -0.3184 2.6701 36 1 11.0809 -1.1984 2.0786 37 1 11.2745 -3.2816 0.7801 38 1 9.2459 -4.4880 0.0785 39 1 7.0236 -3.6116 0.6758 40 1 3.9754 -2.1526 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139933111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:07 Heat of formation + Delta-G solvation = 86.378088 kcal Electronic energy + Delta-G solvation = -21635.699053 eV Core-core repulsion = 18609.086398 eV Total energy + Delta-G solvation = -3026.612655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.76394 -38.35956 -35.91786 -33.17171 -31.82809 -31.46497 -30.40925 -29.91861 -27.98651 -25.62746 -24.95562 -23.00640 -22.06634 -21.55940 -20.80697 -19.81814 -17.09435 -16.12677 -15.87491 -15.49453 -15.15020 -14.71609 -14.28439 -14.11418 -13.96760 -13.55816 -13.34640 -12.98369 -12.66357 -12.52249 -12.28426 -12.09436 -12.02176 -11.78361 -11.61056 -11.43106 -10.97794 -10.79935 -10.46981 -10.39789 -10.22404 -10.10579 -9.63860 -9.26089 -9.00527 -8.38328 -8.27310 -8.03980 -7.72340 -7.13780 -6.15541 -3.18455 1.59594 1.81951 2.23781 2.35009 3.31934 3.43067 3.49266 4.19521 4.43277 4.70379 4.71901 4.97833 5.11800 5.37960 5.47092 5.55944 5.62060 5.67347 5.71803 5.73223 5.80773 5.81406 5.84752 5.99013 6.13658 6.29376 6.32644 6.39458 6.47235 6.52314 6.63234 6.68768 6.93972 6.95062 7.07972 7.23142 7.27063 7.49041 7.63161 7.71794 7.84467 8.00542 8.28333 8.45146 8.99106 9.66110 10.15710 10.88553 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.006316 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.801009 B = 4431.930543 C = 5981.704459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.101 3.899 3 C -0.175 4.175 4 C -0.057 4.057 5 C -0.130 4.130 6 C 0.191 3.809 7 N -0.580 5.580 8 C -0.271 4.271 9 H 0.080 0.920 10 C 0.029 3.971 11 N -0.859 5.859 12 Si 0.856 3.144 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.283 1.283 16 C 0.160 3.840 17 C -0.068 4.068 18 C -0.069 4.069 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.137 4.137 23 C 0.102 3.898 24 N -0.491 5.491 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.261 0.739 33 H 0.019 0.981 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 -1.991 -6.810 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.037 4.037 3 C -0.195 4.195 4 C -0.083 4.083 5 C -0.135 4.135 6 C 0.063 3.937 7 N -0.298 5.298 8 C -0.397 4.397 9 H 0.098 0.902 10 C -0.171 4.171 11 N -0.501 5.501 12 Si 0.683 3.317 13 H -0.212 1.212 14 H -0.218 1.218 15 H -0.209 1.209 16 C 0.035 3.965 17 C -0.071 4.071 18 C -0.087 4.087 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.056 4.056 24 N -0.201 5.201 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.157 -2.785 -6.610 8.290 hybrid contribution 0.211 1.470 0.616 1.608 sum -3.946 -1.314 -5.994 7.296 Atomic orbital electron populations 1.20605 0.89743 1.02823 1.02253 1.21056 0.96427 0.88714 0.97544 1.21855 0.95193 0.98659 1.03819 1.21438 0.93649 0.98431 0.94823 1.22039 1.00600 0.93409 0.97500 1.19662 0.86432 1.00204 0.87365 1.44042 1.72913 1.02630 1.10245 1.19042 1.45457 0.86235 0.89008 0.90203 1.24837 0.98927 0.96960 0.96345 1.69987 1.34391 1.36276 1.09434 0.87018 0.82107 0.83220 0.79316 1.21204 1.21768 1.20928 1.20948 0.88052 0.84931 1.02569 1.20986 0.98944 0.92759 0.94414 1.21817 0.90290 1.00845 0.95771 1.21218 0.98008 0.96745 1.00227 1.20891 0.97370 0.96869 1.01104 1.20853 0.93108 0.99853 1.02193 1.21101 0.96483 0.97487 1.00498 1.22494 0.88858 0.98074 0.96144 1.67401 1.10269 1.29341 1.13087 0.91181 0.91019 0.91320 0.85816 0.85250 0.92657 0.92937 0.92805 0.96257 0.84971 0.82260 0.87657 0.87920 0.87833 0.87714 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.17 36.00 0.37 -0.80 16 2 C 0.10 1.62 6.78 -82.59 -0.56 1.06 16 3 C -0.18 -2.76 9.74 -39.44 -0.38 -3.14 16 4 C -0.06 -0.98 9.86 -39.27 -0.39 -1.37 16 5 C -0.13 -2.37 5.48 -104.49 -0.57 -2.95 16 6 C 0.19 3.64 5.83 -5.20 -0.03 3.61 16 7 N -0.58 -12.93 2.45 -175.99 -0.43 -13.36 16 8 C -0.27 -6.63 9.29 -15.06 -0.14 -6.76 16 9 H 0.08 1.96 8.05 -52.49 -0.42 1.53 16 10 C 0.03 0.71 4.95 -17.43 -0.09 0.63 16 11 N -0.86 -21.65 8.07 55.49 0.45 -21.21 16 12 Si 0.86 19.95 29.69 -169.99 -5.05 14.90 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.16 3.55 5.34 -5.20 -0.03 3.52 16 17 C -0.07 -1.45 5.47 -104.63 -0.57 -2.02 16 18 C -0.07 -1.50 9.25 -39.58 -0.37 -1.87 16 19 C -0.14 -2.74 10.05 -39.59 -0.40 -3.14 16 20 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 21 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 22 C -0.14 -2.55 9.67 -39.58 -0.38 -2.93 16 23 C 0.10 1.82 10.86 -17.55 -0.19 1.63 16 24 N -0.49 -8.82 10.27 -9.48 -0.10 -8.92 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 31 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 32 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 34 H 0.13 3.32 4.84 -51.93 -0.25 3.07 16 35 H 0.16 3.89 5.57 -52.49 -0.29 3.60 16 36 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 37 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.10 1.75 7.96 -52.48 -0.42 1.33 16 40 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -26.61 335.97 -10.15 -36.76 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.56 Total: 7.00 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -4.53 Total: -20.24 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.08 Total: -43.48 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.05 Total: 14.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.61 -10.15 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139933111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.138 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds