Wall clock time and date at job start Tue Mar 31 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38220 * 119.61747 * 2 1 4 4 C 1.38634 * 119.16444 * 179.97438 * 3 2 1 5 5 C 1.38674 * 118.41352 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.41201 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47463 * 89.32699 * 6 5 4 8 8 C 1.36936 * 119.99903 * 271.69552 * 7 6 5 9 9 H 1.08002 * 120.00226 * 342.93134 * 8 7 6 10 10 C 1.38814 * 120.00359 * 162.92615 * 8 7 6 11 11 N 1.31617 * 119.99754 * 42.52210 * 10 8 7 12 12 Si 1.86798 * 120.00098 * 222.52459 * 10 8 7 13 13 H 1.48496 * 109.47328 * 60.00112 * 12 10 8 14 14 H 1.48507 * 109.46909 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47318 * 299.99689 * 12 10 8 16 16 C 1.46499 * 120.00212 * 91.69500 * 7 6 5 17 17 C 1.50697 * 109.47063 * 83.44660 * 16 7 6 18 18 C 1.38233 * 120.00229 * 66.12183 * 17 16 7 19 19 C 1.38235 * 120.00129 * 179.97438 * 18 17 16 20 20 C 1.38231 * 120.00163 * 0.09105 * 19 18 17 21 21 C 1.38236 * 119.99667 * 359.86018 * 20 19 18 22 22 C 1.38231 * 119.99913 * 246.09786 * 17 16 7 23 23 C 1.38179 * 119.16433 * 0.27146 * 5 4 3 24 24 N 1.31853 * 119.61934 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46817 * 90.00672 * 1 2 3 26 26 H 1.09000 * 109.47692 * 209.99890 * 1 2 3 27 27 H 1.08998 * 109.47656 * 330.01119 * 1 2 3 28 28 H 1.08006 * 120.42213 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.79262 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47340 * 329.32103 * 6 5 4 31 31 H 1.09006 * 109.46913 * 209.32429 * 6 5 4 32 32 H 0.97000 * 119.99962 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47416 * 323.44564 * 16 7 6 34 34 H 1.09002 * 109.46768 * 203.44315 * 16 7 6 35 35 H 1.08000 * 120.00166 * 359.69487 * 18 17 16 36 36 H 1.08007 * 120.00073 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.00157 * 179.97438 * 20 19 18 38 38 H 1.08005 * 119.99562 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.00195 * 359.97438 * 22 17 16 40 40 H 1.08000 * 119.61406 * 179.70934 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1907 0.0005 5 6 4.2266 -0.0342 0.0005 6 6 5.7321 -0.0987 0.0017 7 7 6.2197 -0.1040 1.3831 8 6 6.4652 1.0794 2.0271 9 1 6.5698 1.9918 1.4588 10 6 6.5796 1.1062 3.4102 11 7 7.2577 0.1656 4.0328 12 14 5.7710 2.4773 4.3878 13 1 4.3054 2.4575 4.1494 14 1 6.0393 2.2782 5.8348 15 1 6.3250 3.7859 3.9566 16 6 6.4446 -1.3752 2.0757 17 6 7.8046 -1.9121 1.7111 18 6 8.9435 -1.2349 2.1051 19 6 10.1911 -1.7277 1.7711 20 6 10.2998 -2.8967 1.0414 21 6 9.1609 -3.5745 0.6482 22 6 7.9134 -3.0821 0.9830 23 6 3.4765 -1.1947 -0.0058 24 7 2.1586 -1.1462 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5136 28 1 1.6507 2.1373 -0.0004 29 1 4.1365 2.1139 0.0001 30 1 6.1334 0.7690 -0.5220 31 1 6.0572 -1.0092 -0.5018 32 1 7.3379 0.1845 4.9993 33 1 5.6792 -2.0917 1.7777 34 1 6.3936 -1.2160 3.1528 35 1 8.8586 -0.3184 2.6701 36 1 11.0809 -1.1984 2.0786 37 1 11.2745 -3.2816 0.7801 38 1 9.2459 -4.4880 0.0785 39 1 7.0236 -3.6116 0.6758 40 1 3.9754 -2.1526 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139933111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:06 Heat of formation + Delta-G solvation = 75.575676 kcal Electronic energy + Delta-G solvation = -21636.167481 eV Core-core repulsion = 18609.086398 eV Total energy + Delta-G solvation = -3027.081083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08250 -39.85235 -37.53384 -34.64997 -33.15311 -33.08957 -31.88755 -31.38241 -29.33592 -27.33365 -26.41513 -24.34287 -23.61630 -23.00930 -22.20064 -21.38145 -18.86978 -17.45993 -17.28986 -16.93145 -16.79696 -16.07715 -15.82229 -15.65295 -15.30718 -15.29751 -14.83608 -14.42449 -13.98665 -13.94298 -13.66719 -13.42114 -13.29519 -13.19514 -13.01400 -12.90835 -12.67079 -12.48615 -12.13436 -12.04550 -11.99153 -11.66614 -11.29539 -10.60021 -10.36217 -10.17716 -9.61281 -9.51211 -9.28716 -8.87530 -8.02748 -5.05685 0.29020 0.48128 0.76963 0.88246 1.42728 1.52612 1.56462 2.49160 2.90179 3.08198 3.22992 3.51630 3.93402 3.95996 4.10342 4.17622 4.28702 4.29241 4.34580 4.45709 4.55094 4.62133 4.77167 4.80092 4.83705 4.87965 4.92549 4.97234 5.03964 5.16117 5.23172 5.33711 5.44897 5.57942 5.58753 5.73702 5.80064 5.83723 5.94605 6.01451 6.21647 6.38905 6.59983 7.12947 7.14171 7.86371 8.33155 8.98902 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.006316 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.801009 B = 4431.930543 C = 5981.704459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 C -0.176 4.176 4 C -0.070 4.070 5 C -0.145 4.145 6 C 0.196 3.804 7 N -0.590 5.590 8 C -0.268 4.268 9 H 0.075 0.925 10 C -0.008 4.008 11 N -0.870 5.870 12 Si 0.901 3.099 13 H -0.296 1.296 14 H -0.299 1.299 15 H -0.281 1.281 16 C 0.165 3.835 17 C -0.087 4.087 18 C -0.097 4.097 19 C -0.151 4.151 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.141 4.141 23 C 0.093 3.907 24 N -0.511 5.511 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.254 0.746 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -2.789 -8.326 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 C -0.195 4.195 4 C -0.096 4.096 5 C -0.150 4.150 6 C 0.069 3.931 7 N -0.309 5.309 8 C -0.396 4.396 9 H 0.093 0.907 10 C -0.206 4.206 11 N -0.513 5.513 12 Si 0.730 3.270 13 H -0.224 1.224 14 H -0.226 1.226 15 H -0.207 1.207 16 C 0.040 3.960 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.064 4.064 24 N -0.221 5.221 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.712 -3.579 -8.146 10.068 hybrid contribution 0.357 1.689 0.997 1.993 sum -4.355 -1.890 -7.150 8.582 Atomic orbital electron populations 1.20714 0.86766 1.03836 1.03837 1.21787 0.98479 0.88302 0.95823 1.22202 0.94603 1.00046 1.02679 1.21655 0.94791 0.98276 0.94893 1.21894 0.99832 0.94160 0.99093 1.19658 0.87148 1.00559 0.85707 1.44142 1.73546 1.01987 1.11240 1.19134 1.44411 0.86905 0.89155 0.90740 1.25193 0.99954 0.98392 0.97084 1.70145 1.35189 1.37222 1.08771 0.86294 0.80661 0.81995 0.78064 1.22380 1.22586 1.20678 1.20689 0.89294 0.85166 1.00815 1.20872 0.97885 0.94168 0.96023 1.21607 0.92036 1.00598 0.97333 1.21399 0.97334 0.97741 1.00458 1.21282 0.99225 0.95656 0.99496 1.21277 0.92176 1.00656 1.01216 1.21302 0.98213 0.96557 0.99855 1.22633 0.89217 0.98323 0.96235 1.67473 1.10184 1.30484 1.13922 0.89176 0.91170 0.89162 0.82698 0.84919 0.92696 0.92069 0.93572 0.95591 0.88066 0.85640 0.86343 0.84392 0.84175 0.85952 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 10.17 71.24 0.72 -1.27 16 2 C 0.09 2.85 6.78 42.55 0.29 3.14 16 3 C -0.18 -5.18 9.74 22.36 0.22 -4.97 16 4 C -0.07 -2.35 9.86 22.47 0.22 -2.13 16 5 C -0.14 -5.25 5.48 -19.78 -0.11 -5.36 16 6 C 0.20 7.50 5.83 85.63 0.50 8.00 16 7 N -0.59 -26.86 2.45 -710.70 -1.74 -28.61 16 8 C -0.27 -13.48 9.29 84.03 0.78 -12.70 16 9 H 0.07 3.74 8.05 -2.91 -0.02 3.72 16 10 C -0.01 -0.44 4.95 84.86 0.42 -0.02 16 11 N -0.87 -45.80 8.07 21.65 0.17 -45.63 16 12 Si 0.90 42.18 29.69 68.60 2.04 44.22 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 16 C 0.17 7.54 5.34 85.63 0.46 7.99 16 17 C -0.09 -3.70 5.47 -19.87 -0.11 -3.81 16 18 C -0.10 -4.32 9.25 22.27 0.21 -4.11 16 19 C -0.15 -5.63 10.05 22.27 0.22 -5.41 16 20 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 21 C -0.14 -4.19 10.05 22.27 0.22 -3.96 16 22 C -0.14 -5.00 9.67 22.27 0.22 -4.78 16 23 C 0.09 3.28 10.86 84.67 0.92 4.20 16 24 N -0.51 -17.78 10.27 -183.90 -1.89 -19.67 16 25 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 28 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 30 H 0.05 2.06 8.00 -2.39 -0.02 2.04 16 31 H 0.06 2.19 8.01 -2.38 -0.02 2.17 16 32 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 33 H 0.03 1.10 7.87 -2.39 -0.02 1.09 16 34 H 0.10 5.32 4.84 -2.39 -0.01 5.31 16 35 H 0.13 6.44 5.57 -2.91 -0.02 6.43 16 36 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 39 H 0.12 3.83 7.96 -2.91 -0.02 3.81 16 40 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -58.43 335.97 5.00 -53.42 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.02 Total: 25.59 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 5.41 Total: -29.33 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -3.46 Total: -93.90 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.04 Total: 44.22 kcal Total: -58.43 5.00 -53.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139933111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.999 kcal (2) G-P(sol) polarization free energy of solvation -58.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds