Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45210 * 109.47196 * 2 1 4 4 C 1.34229 * 116.99890 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99635 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.47134 * 174.29761 * 6 4 3 8 8 C 1.46899 * 110.99810 * 287.79993 * 7 6 4 9 9 C 1.50702 * 109.46970 * 294.87376 * 8 7 6 10 10 H 1.07995 * 120.00364 * 5.36506 * 9 8 7 11 11 C 1.37885 * 119.99963 * 185.35942 * 9 8 7 12 12 N 1.31513 * 119.99890 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99903 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47290 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47434 * 120.00236 * 13 11 9 16 16 H 1.48503 * 109.46979 * 240.00269 * 13 11 9 17 17 C 1.46898 * 111.00152 * 163.84401 * 7 6 4 18 18 C 1.50700 * 109.47258 * 189.99823 * 17 7 6 19 19 O 1.34748 * 126.44419 * 269.97715 * 18 17 7 20 20 C 1.33968 * 107.75385 * 180.02562 * 19 18 17 21 21 N 1.30261 * 108.76421 * 359.97438 * 20 19 18 22 22 C 1.34332 * 126.44117 * 89.99890 * 18 17 7 23 23 C 1.50702 * 126.16716 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.47295 * 59.99780 * 1 2 3 25 25 H 1.08992 * 109.46939 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47216 * 300.00421 * 1 2 3 27 27 H 1.08992 * 109.47297 * 239.99843 * 2 1 3 28 28 H 1.08999 * 109.47107 * 119.99460 * 2 1 3 29 29 H 1.09004 * 109.47385 * 54.29567 * 6 4 3 30 30 H 1.09000 * 109.47522 * 294.30280 * 6 4 3 31 31 H 1.08997 * 109.47455 * 54.87707 * 8 7 6 32 32 H 1.09000 * 109.46938 * 174.88098 * 8 7 6 33 33 H 0.97000 * 120.00047 * 179.97438 * 12 11 9 34 34 H 1.09005 * 109.47127 * 69.99965 * 17 7 6 35 35 H 1.08999 * 109.47246 * 310.00418 * 17 7 6 36 36 H 1.08004 * 125.61789 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47359 * 270.02513 * 23 22 18 38 38 H 1.09006 * 109.46727 * 30.02162 * 23 22 18 39 39 H 1.09002 * 109.46976 * 150.02183 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3814 2.8633 0.1360 8 6 5.7628 2.4683 1.4985 9 6 5.3463 3.5438 2.4684 10 1 4.7722 4.3904 2.1222 11 6 5.6981 3.4469 3.7981 12 7 6.3976 2.4161 4.2198 13 14 5.1812 4.7796 5.0005 14 1 4.4075 5.8229 4.2806 15 1 4.3357 4.1841 6.0662 16 1 6.3890 5.3912 5.6108 17 6 6.0107 4.1367 -0.2387 18 6 7.5041 3.9533 -0.3234 19 8 8.3891 4.1191 0.6791 20 6 9.6103 3.8610 0.1928 21 7 9.5017 3.5442 -1.0661 22 6 8.2034 3.5941 -1.4126 23 6 7.6352 3.2996 -2.7771 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.5057 3.5027 0.8333 30 1 3.6684 3.4346 -0.9378 31 1 5.2668 1.5330 1.7579 32 1 6.8432 2.3327 1.5484 33 1 6.6455 2.3481 5.1551 34 1 5.7794 4.8913 0.5131 35 1 5.6287 4.4597 -1.2071 36 1 10.5329 3.9070 0.7524 37 1 7.3914 2.2397 -2.8481 38 1 6.7325 3.8911 -2.9301 39 1 8.3708 3.5551 -3.5398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141054841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -57.609343 kcal Electronic energy + Delta-G solvation = -22808.291983 eV Core-core repulsion = 19332.293551 eV Total energy + Delta-G solvation = -3475.998433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.73350 -39.94943 -37.16571 -35.74295 -34.56503 -32.62131 -31.75981 -31.35547 -28.58705 -27.74117 -26.07522 -24.42488 -23.13024 -21.96490 -21.34147 -20.29919 -19.61004 -17.40591 -16.75162 -16.41340 -16.23533 -16.08580 -15.57275 -14.95902 -14.51008 -14.39113 -14.12531 -13.56591 -13.36100 -12.92378 -12.86345 -12.65867 -12.43877 -12.38474 -11.98043 -11.64688 -11.47964 -11.40903 -11.15274 -11.00528 -10.96032 -10.54546 -10.44775 -10.22714 -10.15255 -9.98497 -9.80750 -9.68297 -8.48432 -8.15386 -7.43705 -6.08791 -4.19141 2.02864 2.82910 2.99611 3.20041 3.22129 3.30479 3.31780 3.42120 4.34302 4.62897 4.90897 5.02864 5.06741 5.21460 5.24339 5.29359 5.34996 5.39353 5.56109 5.62427 5.80336 5.84642 5.93455 5.97834 6.01450 6.05030 6.10759 6.20362 6.43437 6.68653 6.84857 6.86248 7.01308 7.45987 7.71978 7.84921 7.98419 8.14922 8.26174 8.40398 8.88624 9.47633 10.97095 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.007170 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.847206 B = 3903.993020 C = 5934.606543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.466 3.534 5 O -0.486 6.486 6 C 0.068 3.932 7 N -0.525 5.525 8 C 0.186 3.814 9 C -0.558 4.558 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.882 5.882 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.142 3.858 18 C -0.002 4.002 19 O -0.180 6.180 20 C 0.156 3.844 21 N -0.495 5.495 22 C -0.023 4.023 23 C -0.060 4.060 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.241 0.759 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 1.714 -10.073 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.061 4.061 7 N -0.250 5.250 8 C 0.061 3.939 9 C -0.597 4.597 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.520 5.520 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.014 3.986 18 C -0.057 4.057 19 O -0.064 6.064 20 C -0.071 4.071 21 N -0.225 5.225 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.257 0.743 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.529 0.788 -10.561 11.518 hybrid contribution -0.762 1.153 2.080 2.498 sum -5.292 1.940 -8.480 10.183 Atomic orbital electron populations 1.21782 0.93128 1.02519 1.03304 1.22891 0.94856 0.81034 1.02389 1.86475 1.25444 1.31678 1.84957 1.23701 0.79848 0.93147 0.72563 1.90646 1.60022 1.42870 1.43528 1.21386 0.90831 0.90152 1.03700 1.62272 1.04153 1.27345 1.31220 1.19889 0.97764 0.96086 0.80206 1.21663 1.35980 1.07969 0.94124 0.92383 1.24912 0.94595 0.95471 0.98297 1.69967 1.37186 1.28953 1.15895 0.86610 0.78448 0.82012 0.81364 1.19745 1.20947 1.20861 1.20285 0.83981 0.93120 1.01177 1.22940 0.92958 1.04270 0.85515 1.84595 1.16907 1.66093 1.38772 1.27770 0.88521 1.00454 0.90305 1.70257 1.20031 1.19133 1.13068 1.21332 0.88672 1.06330 0.97989 1.19975 0.99536 1.02263 0.89938 0.91732 0.90657 0.91531 0.91651 0.91394 0.89184 0.88373 0.94437 0.94233 0.92781 0.91192 0.89366 0.74324 0.90873 0.91274 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.05 10.22 -39.25 -0.40 -6.45 16 4 C 0.47 8.89 7.54 36.00 0.27 9.16 16 5 O -0.49 -10.90 14.91 -18.75 -0.28 -11.18 16 6 C 0.07 1.21 5.43 -4.98 -0.03 1.19 16 7 N -0.52 -10.87 4.29 -238.96 -1.03 -11.90 16 8 C 0.19 4.79 4.62 -4.98 -0.02 4.77 16 9 C -0.56 -14.75 7.32 -34.44 -0.25 -15.00 16 10 H 0.06 1.46 5.97 -52.49 -0.31 1.15 16 11 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 12 N -0.88 -25.89 13.29 55.43 0.74 -25.15 16 13 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.14 2.58 5.07 -4.98 -0.03 2.56 16 18 C 0.00 -0.05 5.94 -35.69 -0.21 -0.26 16 19 O -0.18 -3.73 10.23 5.37 0.05 -3.68 16 20 C 0.16 2.70 13.23 52.10 0.69 3.39 16 21 N -0.49 -9.16 11.29 -11.17 -0.13 -9.29 16 22 C -0.02 -0.41 7.11 -82.81 -0.59 -1.00 16 23 C -0.06 -0.85 10.22 36.01 0.37 -0.48 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.09 1.67 6.45 -51.93 -0.33 1.34 16 30 H 0.10 1.33 7.80 -51.93 -0.41 0.92 16 31 H 0.04 1.09 6.58 -51.93 -0.34 0.74 16 32 H 0.04 1.15 6.89 -51.93 -0.36 0.79 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.36 6.32 -51.93 -0.33 1.03 16 35 H 0.09 1.25 6.89 -51.93 -0.36 0.89 16 36 H 0.24 2.92 8.06 -52.48 -0.42 2.50 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.83 7.17 -51.93 -0.37 0.46 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -33.89 330.92 -5.69 -39.58 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.33 Total: 1.00 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 0.72 Total: 6.16 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.42 Total: -46.34 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.63 Total: -21.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.89 -5.69 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141054841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.034 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds