Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47124 * 270.00360 * 3 2 1 5 5 H 1.48502 * 109.46938 * 30.00069 * 3 2 1 6 6 H 1.48500 * 109.47247 * 150.00004 * 3 2 1 7 7 C 1.37873 * 119.99583 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.85050 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53758 * 231.32784 * 8 7 2 10 10 C 1.52958 * 109.40405 * 305.37101 * 9 8 7 11 11 H 1.08998 * 109.35340 * 303.52962 * 10 9 8 12 12 N 1.46498 * 109.41629 * 183.70378 * 10 9 8 13 13 C 1.39189 * 119.99739 * 84.36889 * 12 10 9 14 14 C 1.38042 * 119.24200 * 0.27495 * 13 12 10 15 15 C 1.40404 * 118.53598 * 179.97438 * 14 13 12 16 16 C 1.40353 * 122.13380 * 180.02562 * 15 14 13 17 17 C 1.36167 * 119.48591 * 179.97438 * 16 15 14 18 18 C 1.39420 * 121.01316 * 0.02562 * 17 16 15 19 19 C 1.36126 * 121.12118 * 0.02562 * 18 17 16 20 20 C 1.40437 * 119.55338 * 359.96035 * 19 18 17 21 21 C 1.40312 * 121.93470 * 180.02562 * 20 19 18 22 22 N 1.31254 * 120.15362 * 179.72963 * 21 20 19 23 23 C 1.52958 * 109.81710 * 63.59932 * 10 9 8 24 24 C 1.51273 * 120.84958 * 0.02562 * 7 2 1 25 25 H 0.97010 * 119.99784 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.62160 * 351.03798 * 8 7 2 27 27 H 1.08998 * 109.62887 * 111.60826 * 8 7 2 28 28 H 1.08997 * 109.48589 * 185.39124 * 9 8 7 29 29 H 1.09008 * 109.48119 * 65.34772 * 9 8 7 30 30 H 0.97001 * 120.00384 * 264.65135 * 12 10 9 31 31 H 1.08002 * 120.72756 * 0.02562 * 14 13 12 32 32 H 1.07999 * 120.26086 * 0.02562 * 16 15 14 33 33 H 1.08002 * 119.49317 * 180.02562 * 17 16 15 34 34 H 1.08008 * 119.43543 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.22599 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.92218 * 0.03416 * 21 20 19 37 37 H 1.09001 * 109.48394 * 56.38308 * 23 10 9 38 38 H 1.09004 * 109.48156 * 176.41029 * 23 10 9 39 39 H 1.08997 * 109.62885 * 8.95972 * 24 7 2 40 40 H 1.09003 * 109.62144 * 248.38237 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2166 0.0000 9 6 3.9910 -2.1308 -1.1346 10 6 3.3401 -3.5068 -0.9842 11 1 3.5738 -3.9112 0.0007 12 7 3.8603 -4.4071 -2.0162 13 6 5.0586 -5.0844 -1.8091 14 6 5.7409 -4.9006 -0.6233 15 6 6.9477 -5.5916 -0.4298 16 6 7.7024 -5.4612 0.7464 17 6 8.8653 -6.1573 0.8772 18 6 9.3181 -6.9971 -0.1395 19 6 8.6131 -7.1474 -1.2942 20 6 7.4085 -6.4463 -1.4665 21 6 6.6418 -6.5643 -2.6357 22 7 5.5183 -5.8967 -2.7576 23 6 1.8232 -3.3823 -1.1359 24 6 1.2675 -2.5151 -0.0017 25 1 -0.4850 0.8402 0.0004 26 1 3.8982 -0.2079 -0.1591 27 1 3.8771 -1.6008 0.9544 28 1 5.0751 -2.2346 -1.0892 29 1 3.7070 -1.6972 -2.0936 30 1 3.3719 -4.5281 -2.8454 31 1 5.3544 -4.2405 0.1392 32 1 7.3629 -4.8144 1.5419 33 1 9.4459 -6.0574 1.7824 34 1 10.2439 -7.5377 -0.0085 35 1 8.9771 -7.8021 -2.0722 36 1 6.9744 -7.2097 -3.4352 37 1 1.5905 -2.9191 -2.0947 38 1 1.3708 -4.3730 -1.0914 39 1 0.2036 -2.3408 -0.1619 40 1 1.4192 -3.0197 0.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = 40.700361 kcal Electronic energy + Delta-G solvation = -21347.616608 eV Core-core repulsion = 18319.023218 eV Total energy + Delta-G solvation = -3028.593390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64018 -38.18756 -36.84804 -34.20956 -32.49530 -31.76072 -30.72216 -29.81981 -28.45537 -26.81824 -24.21043 -22.98925 -22.20608 -21.62210 -21.37187 -19.48954 -17.98057 -17.38100 -16.46536 -16.17083 -15.32505 -14.84323 -14.68476 -14.47360 -14.32655 -13.62827 -13.47289 -13.30873 -13.02297 -12.75493 -12.52785 -12.17731 -12.07968 -11.78873 -11.67682 -11.11157 -11.04549 -10.93401 -10.74031 -10.33286 -10.13367 -9.99907 -9.68843 -9.39396 -9.35614 -9.04420 -8.76448 -8.52514 -8.50101 -7.03649 -6.15913 -4.07316 0.53183 1.16799 2.09722 3.22106 3.23441 3.32816 3.34003 3.48925 4.27899 4.33822 4.56408 4.81963 4.86177 4.94622 5.10656 5.16452 5.23154 5.33408 5.56500 5.74268 5.77475 5.78803 5.94841 5.99994 6.05705 6.16110 6.39869 6.44830 6.50804 6.52482 6.63772 6.66998 6.79598 6.83399 6.92479 6.97506 7.03103 7.33668 7.39563 7.59470 7.64896 7.73522 7.94217 8.31147 8.35707 8.90279 9.48786 10.93546 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.003984 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.724557 B = 7025.552064 C = 7587.395185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.491 4.491 8 C -0.013 4.013 9 C -0.120 4.120 10 C 0.162 3.838 11 H 0.072 0.928 12 N -0.716 5.716 13 C 0.399 3.601 14 C -0.251 4.251 15 C 0.027 3.973 16 C -0.128 4.128 17 C -0.092 4.092 18 C -0.154 4.154 19 C -0.068 4.068 20 C -0.171 4.171 21 C 0.188 3.812 22 N -0.536 5.536 23 C -0.114 4.114 24 C 0.014 3.986 25 H 0.265 0.735 26 H 0.032 0.968 27 H 0.018 0.982 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.399 0.601 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.160 0.840 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 -12.192 -1.800 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.510 4.510 8 C -0.051 4.051 9 C -0.159 4.159 10 C 0.059 3.941 11 H 0.090 0.910 12 N -0.342 5.342 13 C 0.172 3.828 14 C -0.279 4.279 15 C 0.022 3.978 16 C -0.147 4.147 17 C -0.111 4.111 18 C -0.173 4.173 19 C -0.087 4.087 20 C -0.175 4.175 21 C 0.015 3.985 22 N -0.250 5.250 23 C -0.152 4.152 24 C -0.024 4.024 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.177 0.823 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 13.920 -11.908 -2.364 18.470 hybrid contribution 0.745 1.010 0.342 1.301 sum 14.664 -10.898 -2.021 18.382 Atomic orbital electron populations 1.69835 1.06169 1.27032 1.49568 1.24843 0.94715 0.98611 0.94420 0.86660 0.79961 0.83272 0.78485 1.20408 1.21584 1.19177 1.20023 0.89302 0.91476 1.50219 1.19725 0.96695 0.95134 0.93563 1.22038 0.97118 0.95466 1.01279 1.21107 0.94996 0.88563 0.89483 0.91027 1.45236 1.20825 1.46583 1.21582 1.18221 0.87126 0.88462 0.88965 1.21322 0.97957 1.08894 0.99681 1.17903 0.93375 0.93229 0.93309 1.20939 0.95545 1.01105 0.97097 1.20895 0.95918 0.95692 0.98609 1.20712 1.00823 1.01194 0.94575 1.20859 0.93158 0.97327 0.97405 1.18808 0.98656 1.03125 0.96955 1.22806 0.87870 0.93204 0.94600 1.66836 1.16079 1.10300 1.31785 1.21916 0.92021 0.98774 1.02497 1.19336 0.98823 0.92722 0.91540 0.92517 0.94977 0.96380 0.94550 0.92698 0.76671 0.84375 0.85506 0.86214 0.86354 0.85699 0.82286 0.92601 0.94462 0.92011 0.97571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 12.73 55.43 0.71 -24.36 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.81 27.27 -169.99 -4.64 16.17 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.07 6.46 56.52 0.37 -5.70 16 7 C -0.49 -12.53 5.51 -98.92 -0.55 -13.07 16 8 C -0.01 -0.29 5.59 -27.49 -0.15 -0.45 16 9 C -0.12 -2.40 5.38 -26.63 -0.14 -2.54 16 10 C 0.16 3.03 2.04 -67.97 -0.14 2.89 16 11 H 0.07 1.36 6.43 -51.93 -0.33 1.03 16 12 N -0.72 -12.14 5.25 -54.06 -0.28 -12.43 16 13 C 0.40 6.69 7.60 -154.67 -1.18 5.51 16 14 C -0.25 -4.07 8.54 -38.84 -0.33 -4.40 16 15 C 0.03 0.40 5.74 -106.83 -0.61 -0.22 16 16 C -0.13 -1.61 9.81 -39.53 -0.39 -2.00 16 17 C -0.09 -0.97 9.95 -39.89 -0.40 -1.36 16 18 C -0.15 -1.51 9.94 -39.90 -0.40 -1.91 16 19 C -0.07 -0.69 9.80 -39.51 -0.39 -1.08 16 20 C -0.17 -2.23 5.74 -106.83 -0.61 -2.84 16 21 C 0.19 2.41 11.03 -17.02 -0.19 2.22 16 22 N -0.54 -8.41 10.32 -12.09 -0.12 -8.53 16 23 C -0.11 -2.30 5.40 -26.65 -0.14 -2.44 16 24 C 0.01 0.33 5.97 -27.50 -0.16 0.16 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.69 7.60 -51.93 -0.39 0.29 16 29 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.40 6.42 8.72 -40.82 -0.36 6.06 16 31 H 0.14 2.27 6.01 -52.49 -0.32 1.95 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -28.56 319.69 -10.81 -39.37 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.42 Total: 4.52 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -5.88 Total: -19.57 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.30 Total: -45.32 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.64 Total: 16.17 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.56 -10.81 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.074 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds