Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48495 * 109.47140 * 239.99942 * 3 2 1 5 5 H 1.48507 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47460 * 119.99539 * 3 2 1 7 7 C 1.37877 * 119.99964 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.84921 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53607 * 231.32092 * 8 7 2 10 10 C 1.52958 * 109.40619 * 305.37333 * 9 8 7 11 11 H 1.09002 * 109.41598 * 303.56753 * 10 9 8 12 12 N 1.46494 * 109.41451 * 183.70060 * 10 9 8 13 13 C 1.38434 * 120.00202 * 155.00201 * 12 10 9 14 14 N 1.31957 * 120.13858 * 0.49508 * 13 12 10 15 15 C 1.32652 * 122.63940 * 180.02562 * 14 13 12 16 16 C 1.36066 * 121.99165 * 359.71588 * 15 14 13 17 17 C 1.40856 * 118.85953 * 0.02562 * 16 15 14 18 18 C 1.40175 * 122.17516 * 179.97438 * 17 16 15 19 19 C 1.36289 * 119.47569 * 180.02562 * 18 17 16 20 20 C 1.39285 * 120.97136 * 359.97438 * 19 18 17 21 21 C 1.36295 * 121.04477 * 359.97438 * 20 19 18 22 22 C 1.40083 * 119.53731 * 0.02562 * 21 20 19 23 23 C 1.52960 * 109.81575 * 63.59935 * 10 9 8 24 24 C 1.51271 * 120.84807 * 179.97438 * 7 2 1 25 25 H 0.97005 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.62498 * 111.60801 * 8 7 2 27 27 H 1.08999 * 109.62712 * 351.03830 * 8 7 2 28 28 H 1.08999 * 109.48318 * 185.39730 * 9 8 7 29 29 H 1.08997 * 109.49234 * 65.36430 * 9 8 7 30 30 H 0.97006 * 120.00251 * 335.00714 * 12 10 9 31 31 H 1.08001 * 119.00585 * 179.70542 * 15 14 13 32 32 H 1.08000 * 120.57371 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.26093 * 0.02562 * 18 17 16 34 34 H 1.07996 * 119.51295 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.47187 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.22995 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.48165 * 56.37733 * 23 10 9 38 38 H 1.08996 * 109.48832 * 176.42337 * 23 10 9 39 39 H 1.08993 * 109.62820 * 248.39492 * 24 7 2 40 40 H 1.09004 * 109.62603 * 8.96577 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5151 0.0005 9 6 1.8229 -3.3826 1.1351 10 6 3.3399 -3.5070 0.9840 11 1 3.5740 -3.9110 -0.0010 12 7 3.8598 -4.4075 2.0159 13 6 5.0487 -5.0854 1.8080 14 7 5.7210 -4.9151 0.6853 15 6 6.8641 -5.5394 0.4342 16 6 7.4271 -6.3990 1.3261 17 6 6.7735 -6.6313 2.5520 18 6 7.2908 -7.5029 3.5203 19 6 6.6120 -7.6873 4.6877 20 6 5.4129 -7.0222 4.9324 21 6 4.8829 -6.1673 4.0127 22 6 5.5535 -5.9536 2.8015 23 6 3.9906 -2.1310 1.1352 24 6 3.5170 -1.2165 0.0000 25 1 -0.4851 0.8401 -0.0004 26 1 1.4199 -3.0192 -0.9539 27 1 0.2036 -2.3408 0.1600 28 1 1.3706 -4.3733 1.0899 29 1 1.5897 -2.9199 2.0941 30 1 3.3709 -4.5288 2.8450 31 1 7.3630 -5.3600 -0.5067 32 1 8.3591 -6.8948 1.0980 33 1 8.2198 -8.0241 3.3427 34 1 7.0098 -8.3589 5.4340 35 1 4.8949 -7.1866 5.8657 36 1 3.9525 -5.6582 4.2163 37 1 3.7062 -1.6977 2.0941 38 1 5.0747 -2.2345 1.0900 39 1 3.8771 -1.6005 -0.9544 40 1 3.8982 -0.2077 0.1591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = 39.807697 kcal Electronic energy + Delta-G solvation = -21481.188209 eV Core-core repulsion = 18452.556111 eV Total energy + Delta-G solvation = -3028.632099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74103 -37.90027 -36.86384 -34.69031 -32.36302 -31.30008 -30.77938 -29.71843 -28.86484 -26.83557 -23.81270 -23.54064 -22.23904 -21.44452 -21.02866 -19.49497 -18.13623 -17.49820 -16.43637 -16.08873 -15.37711 -15.00479 -14.52054 -14.47624 -14.34794 -13.80511 -13.49539 -13.24977 -12.84882 -12.70595 -12.47852 -12.09096 -12.04454 -11.75551 -11.57980 -11.15032 -11.05704 -10.87822 -10.65568 -10.38993 -10.17013 -9.97868 -9.67601 -9.14952 -9.11336 -8.97650 -8.87647 -8.55856 -8.47300 -7.13703 -6.10990 -4.01505 0.64813 1.02771 2.11951 3.21077 3.29359 3.36008 3.38186 3.45587 4.28884 4.38909 4.59266 4.67103 4.82167 4.89103 5.11190 5.17790 5.22810 5.34882 5.47432 5.69935 5.84433 5.85303 5.90753 5.99810 6.11791 6.24024 6.36889 6.44461 6.48047 6.57225 6.65237 6.73198 6.84356 6.90983 6.95727 7.07114 7.08522 7.42553 7.49535 7.64005 7.65865 7.72884 7.83969 8.37371 8.55223 8.95458 9.54291 10.98748 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.004014 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.858213 B = 6973.985791 C = 7331.612634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.489 4.489 8 C 0.015 3.985 9 C -0.116 4.116 10 C 0.162 3.838 11 H 0.084 0.916 12 N -0.700 5.700 13 C 0.449 3.551 14 N -0.560 5.560 15 C 0.151 3.849 16 C -0.253 4.253 17 C 0.019 3.981 18 C -0.129 4.129 19 C -0.092 4.092 20 C -0.147 4.147 21 C -0.071 4.071 22 C -0.154 4.154 23 C -0.111 4.111 24 C -0.007 4.007 25 H 0.265 0.735 26 H 0.007 0.993 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.401 0.599 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.021 0.979 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 -13.601 7.871 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.508 4.508 8 C -0.023 4.023 9 C -0.155 4.155 10 C 0.060 3.940 11 H 0.102 0.898 12 N -0.328 5.328 13 C 0.200 3.800 14 N -0.281 5.281 15 C 0.004 3.996 16 C -0.277 4.277 17 C 0.014 3.986 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.166 4.166 21 C -0.091 4.091 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.045 4.045 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.238 0.762 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.139 -12.788 7.033 18.359 hybrid contribution 0.660 0.328 1.072 1.301 sum 11.799 -12.460 8.105 18.978 Atomic orbital electron populations 1.69818 1.06145 1.27066 1.49854 1.24828 0.94714 0.98548 0.94511 0.86653 0.79376 0.82984 0.79039 1.19959 1.21896 1.20060 1.20048 0.89391 0.91458 1.49947 1.19322 0.98656 0.92730 0.91618 1.21963 0.92592 0.98590 1.02354 1.21083 0.93954 0.88732 0.90272 0.89843 1.45260 1.20470 1.45746 1.21356 1.18616 0.86565 0.86528 0.88338 1.67181 1.10546 1.29430 1.20911 1.21847 0.89730 0.90023 0.98021 1.21372 1.03597 1.06924 0.95765 1.17929 0.92424 0.93924 0.94322 1.20881 1.00510 0.99474 0.93909 1.20909 0.94860 0.98418 0.96930 1.20730 0.97045 0.98925 0.99881 1.20823 0.98736 0.96967 0.92534 1.18486 0.98104 1.02910 0.96497 1.21900 0.97460 0.95188 1.00497 1.19593 0.96481 0.94467 0.94009 0.92533 0.97497 0.92118 0.94667 0.92865 0.76244 0.83545 0.85488 0.85562 0.86104 0.86032 0.85887 0.93414 0.94287 0.96032 0.95767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 12.73 55.43 0.71 -24.74 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.38 26.80 -169.99 -4.56 16.83 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.79 5.51 -98.92 -0.55 -13.34 16 8 C 0.01 0.36 5.97 -27.49 -0.16 0.19 16 9 C -0.12 -2.37 5.40 -26.63 -0.14 -2.51 16 10 C 0.16 3.14 2.36 -67.98 -0.16 2.98 16 11 H 0.08 1.76 7.56 -51.93 -0.39 1.36 16 12 N -0.70 -11.42 5.15 -53.64 -0.28 -11.70 16 13 C 0.45 7.39 7.50 -155.13 -1.16 6.22 16 14 N -0.56 -9.66 9.17 -12.45 -0.11 -9.78 16 15 C 0.15 2.15 11.06 -17.98 -0.20 1.95 16 16 C -0.25 -3.22 9.87 -39.37 -0.39 -3.61 16 17 C 0.02 0.26 5.74 -106.83 -0.61 -0.36 16 18 C -0.13 -1.41 9.81 -39.56 -0.39 -1.79 16 19 C -0.09 -0.90 9.95 -39.89 -0.40 -1.30 16 20 C -0.15 -1.52 9.95 -39.89 -0.40 -1.92 16 21 C -0.07 -0.86 9.52 -39.59 -0.38 -1.23 16 22 C -0.15 -2.23 5.75 -106.71 -0.61 -2.85 16 23 C -0.11 -2.33 5.52 -26.61 -0.15 -2.48 16 24 C -0.01 -0.17 5.60 -27.46 -0.15 -0.33 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.40 5.60 6.76 -40.82 -0.28 5.32 16 31 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.28 6.51 -52.49 -0.34 0.94 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.57 5.17 -51.93 -0.27 0.30 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -29.51 320.66 -10.79 -40.30 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.43 Total: 2.64 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -5.95 Total: -18.39 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.32 Total: -46.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.56 Total: 16.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.51 -10.79 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.109 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds