Wall clock time and date at job start Tue Mar 31 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 N 1.46501 * 109.47078 * 79.98054 * 8 7 2 10 10 C 1.39677 * 119.99732 * 180.02562 * 9 8 7 11 11 C 1.38908 * 120.07827 * 359.71563 * 10 9 8 12 12 C 1.38105 * 119.92764 * 179.77220 * 11 10 9 13 13 C 1.38285 * 120.07252 * 0.50988 * 12 11 10 14 14 C 1.50699 * 119.92476 * 179.72445 * 13 12 11 15 15 C 1.50700 * 109.46885 * 270.01937 * 14 13 12 16 16 H 1.08005 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00181 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46755 * 90.00285 * 19 17 15 21 21 H 1.48498 * 109.46956 * 210.00073 * 19 17 15 22 22 H 1.48496 * 109.47179 * 330.00377 * 19 17 15 23 23 C 1.38290 * 120.15078 * 359.74356 * 13 12 11 24 24 C 1.38112 * 120.07308 * 0.02562 * 23 13 12 25 25 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 26 26 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 27 27 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 28 28 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 30 30 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46996 * 199.97619 * 8 7 2 32 32 H 1.09002 * 109.47259 * 319.97706 * 8 7 2 33 33 H 0.96995 * 120.00183 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.03348 * 0.02562 * 11 10 9 35 35 H 1.07996 * 119.96320 * 180.25324 * 12 11 10 36 36 H 1.08998 * 109.47238 * 30.02093 * 14 13 12 37 37 H 1.08992 * 109.46959 * 150.02276 * 14 13 12 38 38 H 0.97004 * 120.00091 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.96328 * 180.02562 * 23 13 12 40 40 H 1.07991 * 120.03641 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 7 1.0381 -2.8284 -1.3603 10 6 0.3374 -4.0103 -1.6119 11 6 0.0668 -4.8935 -0.5745 12 6 -0.6303 -6.0588 -0.8259 13 6 -1.0496 -6.3521 -2.1106 14 6 -1.8046 -7.6276 -2.3823 15 6 -0.8297 -8.7264 -2.7190 16 1 0.2306 -8.5216 -2.7342 17 6 -1.2913 -9.9934 -3.0065 18 7 -2.5824 -10.2429 -2.9874 19 14 -0.0829 -11.3552 -3.4245 20 1 0.3239 -12.0552 -2.1796 21 1 -0.7276 -12.3226 -4.3484 22 1 1.1156 -10.7702 -4.0777 23 6 -0.7773 -5.4776 -3.1468 24 6 -0.0847 -4.3081 -2.9014 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6675 2.1276 0.0004 29 1 5.3046 0.1284 0.0005 30 1 4.1736 -2.0589 -0.0009 31 1 2.1542 -3.2997 0.3517 32 1 0.6178 -2.4555 0.6604 33 1 1.2294 -2.2141 -2.0862 34 1 0.3976 -4.6670 0.4284 35 1 -0.8446 -6.7439 -0.0190 36 1 -2.3758 -7.9073 -1.4971 37 1 -2.4846 -7.4759 -3.2205 38 1 -2.9072 -11.1343 -3.1901 39 1 -1.1065 -5.7094 -4.1489 40 1 0.1280 -3.6258 -3.7110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162720512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:40 Heat of formation + Delta-G solvation = 47.651987 kcal Electronic energy + Delta-G solvation = -20311.748582 eV Core-core repulsion = 17283.456637 eV Total energy + Delta-G solvation = -3028.291945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71955 -38.88079 -36.18817 -33.92618 -32.96271 -32.33918 -30.34088 -30.06679 -27.92289 -26.96861 -25.46193 -23.16393 -22.79372 -22.30356 -21.24202 -20.00967 -17.41341 -17.03492 -16.50055 -16.22521 -15.53438 -15.37006 -14.86409 -14.47080 -14.14995 -14.13474 -13.64914 -13.53318 -13.24432 -13.05059 -12.76400 -12.67206 -12.47115 -12.26241 -11.99147 -11.70873 -11.23787 -11.20924 -10.67538 -10.53370 -10.15505 -9.95748 -9.80092 -9.76897 -9.42277 -9.23956 -9.04550 -8.37897 -8.25599 -6.81669 -5.98073 -4.02494 0.77437 0.81907 2.10262 2.33517 3.32541 3.33520 3.38711 3.43154 3.78465 4.12034 4.25791 4.39525 4.44069 4.58270 4.64493 4.67099 5.10265 5.18388 5.24923 5.30981 5.34675 5.37497 5.47767 5.51959 5.56133 5.63140 5.83019 6.01716 6.04780 6.10575 6.30580 6.36490 6.40471 6.69555 6.82093 7.28388 7.29581 7.38537 7.60293 7.63110 7.78779 7.97006 7.97370 7.99744 8.40497 9.03380 9.61024 11.10420 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035629 B = 0.002810 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.695621 B = 9960.350253 C =10355.190641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.118 4.118 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.088 3.912 6 C -0.150 4.150 7 C -0.060 4.060 8 C 0.171 3.829 9 N -0.752 5.752 10 C 0.180 3.820 11 C -0.194 4.194 12 C -0.081 4.081 13 C -0.082 4.082 14 C 0.052 3.948 15 C -0.508 4.508 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.080 4.080 24 C -0.190 4.190 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.137 0.863 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.394 0.606 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 20.979 6.673 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.120 4.120 3 C -0.064 4.064 4 N -0.189 5.189 5 C -0.069 4.069 6 C -0.171 4.171 7 C -0.068 4.068 8 C 0.046 3.954 9 N -0.386 5.386 10 C 0.081 3.919 11 C -0.216 4.216 12 C -0.099 4.099 13 C -0.083 4.083 14 C 0.016 3.984 15 C -0.547 4.547 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.098 4.098 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.228 0.772 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.921 21.616 6.845 24.366 hybrid contribution 0.406 -1.427 -0.482 1.560 sum 9.327 20.189 6.362 23.132 Atomic orbital electron populations 1.20845 0.89884 1.03957 1.02959 1.20903 0.97849 0.93464 0.99819 1.22699 0.89906 0.97450 0.96306 1.67666 1.08378 1.31543 1.11321 1.22747 1.00426 0.87581 0.96133 1.22152 0.94480 0.99961 1.00467 1.20291 0.93807 0.95058 0.97668 1.20033 0.97598 0.91624 0.86097 1.44309 1.64215 1.22436 1.07678 1.17567 0.93994 0.86609 0.93745 1.20504 1.07069 0.96781 0.97259 1.20851 0.96772 0.95225 0.97101 1.20477 0.98591 0.97132 0.92122 1.18252 0.94609 0.88052 0.97521 1.21129 0.93163 0.93725 1.46654 0.92571 1.25020 0.95140 0.98668 0.95626 1.69960 1.12532 1.21513 1.49526 0.86572 0.81253 0.81796 0.78291 1.20663 1.21225 1.19852 1.20842 0.97194 0.92762 0.99045 1.20458 1.06506 0.99913 0.94383 0.90670 0.91083 0.90134 0.82770 0.82671 0.84485 0.91532 0.91280 0.77209 0.87379 0.86594 0.95675 0.95667 0.92949 0.86541 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.35 36.00 0.34 -0.54 16 2 C -0.12 -1.02 5.90 -104.49 -0.62 -1.64 16 3 C 0.09 0.83 10.86 -17.55 -0.19 0.64 16 4 N -0.48 -4.93 10.36 -13.26 -0.14 -5.07 16 5 C 0.09 0.77 11.18 -17.55 -0.20 0.57 16 6 C -0.15 -1.29 9.78 -39.44 -0.39 -1.67 16 7 C -0.06 -0.55 5.29 -104.31 -0.55 -1.10 16 8 C 0.17 1.70 4.22 -5.19 -0.02 1.68 16 9 N -0.75 -8.84 5.16 -59.80 -0.31 -9.15 16 10 C 0.18 2.76 6.65 -83.79 -0.56 2.20 16 11 C -0.19 -3.19 9.31 -39.38 -0.37 -3.55 16 12 C -0.08 -1.57 9.69 -39.61 -0.38 -1.96 16 13 C -0.08 -1.78 5.07 -104.59 -0.53 -2.31 16 14 C 0.05 1.36 5.10 -29.04 -0.15 1.22 16 15 C -0.51 -14.37 9.09 -34.44 -0.31 -14.68 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.08 -1.56 9.69 -39.61 -0.38 -1.94 16 24 C -0.19 -3.15 9.90 -39.38 -0.39 -3.54 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.08 0.70 6.53 -51.93 -0.34 0.36 16 28 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 32 H 0.07 0.68 7.21 -51.93 -0.37 0.30 16 33 H 0.39 4.28 8.48 -40.82 -0.35 3.93 16 34 H 0.11 1.51 6.73 -52.49 -0.35 1.16 16 35 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -31.27 339.80 -9.99 -41.26 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.58 Total: 2.23 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -4.80 Total: -25.11 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.29 Total: -40.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.27 -9.99 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162720512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.911 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds