Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38235 * 119.99989 * 2 1 4 4 C 1.38239 * 119.99795 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99810 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00112 * 359.95682 * 4 3 2 7 7 C 1.38241 * 119.99810 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.99645 * 179.97438 * 7 6 4 9 9 N 1.46505 * 109.46971 * 90.00370 * 8 7 6 10 10 C 1.38082 * 119.99817 * 179.97438 * 9 8 7 11 11 N 1.32269 * 119.91055 * 0.29289 * 10 9 8 12 12 C 1.31969 * 121.86732 * 180.29283 * 11 10 9 13 13 C 1.38676 * 121.44769 * 359.67286 * 12 11 10 14 14 C 1.38010 * 119.63049 * 0.02562 * 13 12 11 15 15 C 1.41007 * 118.27878 * 0.02562 * 14 13 12 16 16 C 1.41007 * 120.70576 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00445 * 149.95536 * 16 15 14 18 18 C 1.39945 * 120.00283 * 330.23387 * 16 15 14 19 19 N 1.30868 * 120.00660 * 161.89632 * 18 16 15 20 20 Si 1.86800 * 119.99669 * 341.90170 * 18 16 15 21 21 H 1.48498 * 109.47524 * 95.38826 * 20 18 16 22 22 H 1.48503 * 109.47147 * 215.38663 * 20 18 16 23 23 H 1.48499 * 109.47141 * 335.38330 * 20 18 16 24 24 C 1.38227 * 120.00018 * 0.25877 * 7 6 4 25 25 H 1.09004 * 109.47185 * 89.99855 * 1 2 3 26 26 H 1.08996 * 109.47693 * 210.00030 * 1 2 3 27 27 H 1.09008 * 109.47103 * 330.00289 * 1 2 3 28 28 H 1.08002 * 120.00213 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.46684 * 269.97578 * 5 4 3 30 30 H 1.08996 * 109.47027 * 29.97501 * 5 4 3 31 31 H 1.08998 * 109.46871 * 149.97709 * 5 4 3 32 32 H 1.08000 * 120.00195 * 180.02562 * 6 4 3 33 33 H 1.08993 * 109.47462 * 330.00423 * 8 7 6 34 34 H 1.09006 * 109.47109 * 209.99946 * 8 7 6 35 35 H 0.97004 * 119.99935 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.27309 * 179.69901 * 12 11 10 37 37 H 1.08006 * 120.18622 * 180.02562 * 13 12 11 38 38 H 1.07993 * 120.86047 * 180.02562 * 14 13 12 39 39 H 0.97001 * 120.00337 * 180.02562 * 19 18 16 40 40 H 1.08003 * 119.99999 * 179.72499 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0002 7 6 3.5804 -1.1972 0.0002 8 6 4.3339 -2.5023 0.0000 9 7 4.5786 -2.9251 1.3812 10 6 5.2570 -4.1010 1.6334 11 7 5.6903 -4.8414 0.6266 12 6 6.3376 -5.9745 0.8231 13 6 6.6028 -6.4441 2.1007 14 6 6.1833 -5.7165 3.1958 15 6 5.4920 -4.5084 2.9702 16 6 5.0398 -3.7248 4.0518 17 1 4.9655 -2.6523 3.9478 18 6 4.6930 -4.3360 5.2620 19 7 4.6177 -3.6235 6.3571 20 14 4.3375 -6.1691 5.3142 21 1 5.5662 -6.9005 5.7149 22 1 3.2590 -6.4363 6.2995 23 1 3.9045 -6.6278 3.9699 24 6 2.1981 -1.1971 -0.0052 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5138 28 1 1.6582 2.1325 0.0004 29 1 4.5156 2.8164 -1.0289 30 1 3.7450 3.2621 0.5124 31 1 5.2864 2.3721 0.5127 32 1 5.3517 -0.0001 -0.0002 33 1 5.2861 -2.3720 -0.5141 34 1 3.7446 -3.2620 -0.5135 35 1 4.2639 -2.3789 2.1186 36 1 6.6685 -6.5485 -0.0299 37 1 7.1346 -7.3741 2.2380 38 1 6.3795 -6.0633 4.1995 39 1 4.3777 -4.0472 7.1960 40 1 1.6581 -2.1324 -0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163748835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = 40.027196 kcal Electronic energy + Delta-G solvation = -20998.586394 eV Core-core repulsion = 17969.963813 eV Total energy + Delta-G solvation = -3028.622580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.58735 -38.63698 -35.16433 -33.87163 -33.47150 -32.10885 -31.17809 -28.98505 -27.37647 -26.61657 -25.67148 -24.92373 -21.88754 -20.78257 -20.65571 -20.24516 -17.45785 -16.80111 -16.21135 -15.67883 -15.44779 -15.13950 -14.19578 -14.02218 -13.71819 -13.50365 -13.36139 -13.24238 -13.11037 -12.85688 -12.61322 -12.53305 -12.32154 -12.09239 -11.98345 -11.74725 -11.42475 -11.31214 -10.91181 -10.77792 -10.73016 -10.27322 -9.88642 -9.41850 -9.10344 -8.61739 -8.44428 -8.21076 -8.07360 -6.94103 -6.72123 -4.35633 1.41947 1.47691 2.57703 2.78038 3.10650 3.20433 3.32223 3.73612 3.98374 4.53727 4.61015 4.79981 4.85162 4.91145 5.22355 5.34492 5.38293 5.46417 5.52784 5.59043 5.61249 5.66976 5.76666 5.83644 5.90979 5.99201 6.10408 6.14770 6.29179 6.31404 6.43102 6.57650 6.63305 6.65561 6.84038 6.85189 7.07621 7.13476 7.34956 7.59757 7.80720 8.09645 8.32808 8.41935 8.71646 8.81118 9.59270 10.08140 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.004644 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.660813 B = 6027.389543 C = 6655.108674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.112 4.112 6 C -0.107 4.107 7 C -0.087 4.087 8 C 0.183 3.817 9 N -0.721 5.721 10 C 0.326 3.674 11 N -0.530 5.530 12 C 0.004 3.996 13 C -0.173 4.173 14 C -0.200 4.200 15 C 0.016 3.984 16 C -0.442 4.442 17 H 0.089 0.911 18 C 0.086 3.914 19 N -0.811 5.811 20 Si 0.910 3.090 21 H -0.271 1.271 22 H -0.292 1.292 23 H -0.247 1.247 24 C -0.106 4.106 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.284 0.716 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 7.516 -9.569 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.088 4.088 5 C -0.169 4.169 6 C -0.125 4.125 7 C -0.087 4.087 8 C 0.059 3.941 9 N -0.360 5.360 10 C 0.086 3.914 11 N -0.248 5.248 12 C -0.147 4.147 13 C -0.196 4.196 14 C -0.225 4.225 15 C 0.009 3.991 16 C -0.472 4.472 17 H 0.107 0.893 18 C -0.133 4.133 19 N -0.436 5.436 20 Si 0.737 3.263 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.170 1.170 24 C -0.125 4.125 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.214 7.813 -10.342 13.971 hybrid contribution -0.027 -0.942 1.445 1.725 sum -5.241 6.871 -8.897 12.403 Atomic orbital electron populations 1.20769 0.91360 1.02764 1.02029 1.19860 0.95915 0.93086 0.99936 1.20857 0.93499 0.97334 1.02326 1.19861 0.93779 0.95219 0.99952 1.20768 1.00034 0.94082 1.02031 1.20977 0.99849 0.91344 1.00359 1.20088 0.93815 0.95254 0.99561 1.19837 0.97971 0.90739 0.85588 1.43828 1.63358 1.23177 1.05671 1.18438 0.95323 0.88784 0.88891 1.66621 1.15715 1.07699 1.34743 1.21399 1.04227 0.94274 0.94812 1.21284 1.03943 1.00240 0.94107 1.21021 1.05216 0.98951 0.97360 1.18061 0.95284 0.93998 0.91802 1.19081 1.38266 0.96016 0.93871 0.89280 1.26059 0.92109 1.00767 0.94343 1.69703 1.34902 1.39201 0.99777 0.86304 0.78153 0.82311 0.79523 1.19726 1.21909 1.17043 1.20979 0.93605 0.97609 1.00295 0.91417 0.91450 0.91744 0.86469 0.91416 0.91742 0.91455 0.86025 0.92286 0.92276 0.75487 0.85954 0.88267 0.87570 0.90542 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 2 C -0.09 -1.12 5.88 -104.63 -0.62 -1.73 16 3 C -0.12 -1.49 9.36 -39.58 -0.37 -1.86 16 4 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 5 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 6 C -0.11 -1.52 9.36 -39.58 -0.37 -1.89 16 7 C -0.09 -1.33 5.25 -104.62 -0.55 -1.88 16 8 C 0.18 3.21 5.80 -5.19 -0.03 3.18 16 9 N -0.72 -15.00 5.60 -61.14 -0.34 -15.34 16 10 C 0.33 7.79 7.52 -155.03 -1.17 6.63 16 11 N -0.53 -12.36 9.54 -11.87 -0.11 -12.48 16 12 C 0.00 0.10 11.17 -17.33 -0.19 -0.10 16 13 C -0.17 -3.85 10.08 -39.50 -0.40 -4.25 16 14 C -0.20 -4.89 7.28 -38.62 -0.28 -5.17 16 15 C 0.02 0.41 5.13 -106.47 -0.55 -0.13 16 16 C -0.44 -11.65 8.93 -37.89 -0.34 -11.99 16 17 H 0.09 2.42 7.04 -52.48 -0.37 2.05 16 18 C 0.09 2.22 5.42 -17.32 -0.09 2.13 16 19 N -0.81 -21.39 13.93 55.55 0.77 -20.62 16 20 Si 0.91 20.93 24.53 -169.99 -4.17 16.76 16 21 H -0.27 -6.06 6.71 56.52 0.38 -5.68 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.25 -5.92 6.85 56.52 0.39 -5.53 16 24 C -0.11 -1.52 9.36 -39.59 -0.37 -1.89 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.06 0.56 8.09 -51.92 -0.42 0.14 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.41 8.58 6.76 -40.82 -0.28 8.30 16 36 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 37 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 38 H 0.11 2.58 4.81 -52.49 -0.25 2.32 16 39 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 40 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -28.44 332.68 -9.60 -38.04 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.55 Total: 10.83 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -5.22 Total: -22.21 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.32 Total: -48.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.44 -9.60 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163748835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.069 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds