Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 119.99987 * 2 1 4 4 C 1.38233 * 120.00412 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99782 * 359.96176 * 4 3 2 6 6 C 1.50697 * 119.99897 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47333 * 89.99485 * 6 5 4 8 8 C 1.46493 * 120.00388 * 269.99991 * 7 6 5 9 9 C 1.39084 * 119.99627 * 89.99606 * 7 6 5 10 10 C 1.38746 * 119.65468 * 184.99805 * 9 7 6 11 11 C 1.40768 * 118.66748 * 179.70474 * 10 9 7 12 12 C 1.41557 * 120.99320 * 180.25821 * 11 10 9 13 13 H 1.07999 * 120.00098 * 23.17346 * 12 11 10 14 14 C 1.40030 * 119.99866 * 203.17745 * 12 11 10 15 15 N 1.30745 * 120.00257 * 17.30530 * 14 12 11 16 16 Si 1.86795 * 119.99857 * 197.30516 * 14 12 11 17 17 H 1.48502 * 109.47112 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47293 * 120.00223 * 16 14 12 19 19 H 1.48505 * 109.47322 * 240.00232 * 16 14 12 20 20 C 1.41190 * 118.01669 * 0.28122 * 11 10 9 21 21 C 1.36556 * 119.14309 * 359.97438 * 20 11 10 22 22 N 1.32089 * 121.26749 * 0.02562 * 21 20 11 23 23 C 1.38240 * 120.00014 * 0.26923 * 5 4 3 24 24 C 1.38232 * 119.99841 * 359.51739 * 23 5 4 25 25 H 1.08997 * 109.47242 * 90.00136 * 1 2 3 26 26 H 1.09006 * 109.46594 * 209.99589 * 1 2 3 27 27 H 1.08998 * 109.47664 * 329.99545 * 1 2 3 28 28 H 1.08007 * 119.99464 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00007 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.47017 * 329.99500 * 6 5 4 31 31 H 1.09003 * 109.46716 * 209.99638 * 6 5 4 32 32 H 1.09000 * 109.47241 * 270.00475 * 8 7 6 33 33 H 1.09009 * 109.46575 * 29.99953 * 8 7 6 34 34 H 1.09000 * 109.47420 * 149.99448 * 8 7 6 35 35 H 1.08001 * 120.66559 * 359.97438 * 10 9 7 36 36 H 0.96997 * 120.00274 * 179.97438 * 15 14 12 37 37 H 1.08003 * 120.43137 * 179.97438 * 20 11 10 38 38 H 1.08006 * 119.36298 * 179.97438 * 21 20 11 39 39 H 1.07995 * 119.99894 * 179.73319 * 23 5 4 40 40 H 1.08000 * 120.00420 * 180.24955 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0019 6 6 5.7787 0.0002 0.0030 7 7 6.2660 0.0013 1.3846 8 6 6.5096 1.2704 2.0745 9 6 6.4973 -1.2027 2.0413 10 6 6.8584 -1.1957 3.3809 11 6 7.0814 -2.4265 4.0267 12 6 7.4464 -2.4770 5.3935 13 1 7.2046 -1.6525 6.0478 14 6 8.1212 -3.5959 5.8971 15 7 8.7101 -4.4276 5.0780 16 14 8.1799 -3.9002 7.7391 17 1 7.4424 -2.8204 8.4430 18 1 7.5512 -5.2104 8.0447 19 1 9.5935 -3.9114 8.1942 20 6 6.9305 -3.6092 3.2704 21 6 6.5771 -3.5166 1.9546 22 7 6.3754 -2.3446 1.3797 23 6 3.5806 -1.1971 -0.0030 24 6 2.1983 -1.1971 0.0010 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6580 2.1325 -0.0004 29 1 4.1204 2.1326 0.0001 30 1 6.1423 0.8898 -0.5111 31 1 6.1424 -0.8902 -0.5099 32 1 7.5391 1.5851 1.9037 33 1 5.8290 2.0298 1.6893 34 1 6.3418 1.1409 3.1437 35 1 6.9621 -0.2648 3.9186 36 1 9.1778 -5.2024 5.4268 37 1 7.0924 -4.5747 3.7266 38 1 6.4611 -4.4190 1.3726 39 1 4.1206 -2.1323 -0.0063 40 1 1.6582 -2.1324 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166538897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = 55.136002 kcal Electronic energy + Delta-G solvation = -21177.259006 eV Core-core repulsion = 18149.291592 eV Total energy + Delta-G solvation = -3027.967413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.34816 -38.37755 -35.83019 -33.88612 -32.77259 -30.73711 -30.57560 -29.06847 -28.23060 -25.95271 -25.53047 -23.55625 -22.39928 -21.21794 -20.74875 -19.91583 -17.50176 -16.04055 -15.73288 -15.41001 -14.95011 -14.86788 -14.73337 -14.09396 -13.87672 -13.67384 -13.33692 -13.16480 -13.09299 -12.43837 -12.38253 -12.30612 -12.05884 -11.78776 -11.46168 -11.38689 -11.32369 -11.09113 -10.93076 -10.75797 -10.61885 -10.23001 -9.78360 -9.38248 -8.72795 -8.64348 -8.31851 -7.94083 -7.82834 -6.81432 -6.35570 -4.53617 1.55482 1.68825 2.79779 3.04418 3.07955 3.10470 3.36478 3.76142 3.89619 4.23303 4.71919 4.96457 5.00125 5.22925 5.30463 5.32221 5.56224 5.57435 5.65830 5.72874 5.77953 5.82641 5.97299 6.00385 6.05467 6.19737 6.24078 6.34932 6.38482 6.67551 6.76678 6.81852 6.90497 6.97058 7.00960 7.10752 7.29859 7.31025 7.58742 7.75195 7.95416 8.13859 8.41268 8.66943 8.85635 8.92924 9.78245 10.12316 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003959 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.177133 B = 7070.297715 C = 7306.379479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.097 4.097 6 C 0.175 3.825 7 N -0.622 5.622 8 C 0.108 3.892 9 C 0.401 3.599 10 C -0.335 4.335 11 C 0.156 3.844 12 C -0.457 4.457 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.784 5.784 16 Si 0.909 3.091 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.244 4.244 21 C 0.114 3.886 22 N -0.617 5.617 23 C -0.085 4.085 24 C -0.127 4.127 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.281 0.719 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 7.288 -7.107 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.129 4.129 5 C -0.099 4.099 6 C 0.051 3.949 7 N -0.340 5.340 8 C -0.036 4.036 9 C 0.172 3.828 10 C -0.361 4.361 11 C 0.148 3.852 12 C -0.488 4.488 13 H 0.097 0.903 14 C -0.140 4.140 15 N -0.409 5.409 16 Si 0.733 3.267 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.268 4.268 21 C -0.035 4.035 22 N -0.340 5.340 23 C -0.103 4.103 24 C -0.145 4.145 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.024 7.196 -8.046 14.070 hybrid contribution 0.359 -0.229 1.849 1.897 sum -8.665 6.967 -6.197 12.729 Atomic orbital electron populations 1.20747 0.91750 1.02426 1.01819 1.19849 0.95655 0.93409 1.00744 1.20890 0.94197 0.97082 1.02624 1.20994 0.93988 0.97426 1.00528 1.20546 0.97333 0.92931 0.99044 1.20036 0.88155 1.02431 0.84281 1.45946 1.72833 1.02774 1.12431 1.21432 0.99152 0.84833 0.98201 1.17879 0.91733 0.85109 0.88078 1.21175 1.23460 0.97909 0.93588 1.17585 0.84843 0.90113 0.92663 1.19614 1.32317 1.02523 0.94344 0.90308 1.25952 0.92819 0.94782 1.00436 1.69813 1.22804 1.11178 1.37090 0.86259 0.78766 0.79396 0.82304 1.18331 1.19592 1.19912 1.21777 1.10139 0.99741 0.95170 1.21347 0.96279 0.93000 0.92914 1.66700 1.30662 0.97121 1.39478 1.21287 0.93641 0.98754 0.96663 1.21047 0.94503 0.97177 1.01732 0.91604 0.91792 0.91931 0.86771 0.86745 0.91893 0.89105 0.94368 0.92870 0.91314 0.88374 0.90808 0.86011 0.86562 0.84967 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.10 -1.28 5.88 -104.62 -0.62 -1.90 16 3 C -0.13 -1.70 9.70 -39.58 -0.38 -2.09 16 4 C -0.11 -1.55 9.70 -39.58 -0.38 -1.94 16 5 C -0.10 -1.55 5.46 -104.62 -0.57 -2.12 16 6 C 0.17 2.90 5.60 -5.19 -0.03 2.87 16 7 N -0.62 -11.94 2.97 -183.17 -0.54 -12.48 16 8 C 0.11 1.72 10.28 59.84 0.62 2.34 16 9 C 0.40 9.38 7.37 -154.98 -1.14 8.24 16 10 C -0.33 -8.43 9.07 -38.44 -0.35 -8.77 16 11 C 0.16 4.22 5.61 -106.56 -0.60 3.62 16 12 C -0.46 -12.15 9.12 -37.65 -0.34 -12.50 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 14 C 0.08 1.98 5.20 -17.34 -0.09 1.89 16 15 N -0.78 -20.04 10.90 55.55 0.61 -19.44 16 16 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 17 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 C -0.24 -6.39 8.75 -39.07 -0.34 -6.73 16 21 C 0.11 2.74 11.10 -18.05 -0.20 2.54 16 22 N -0.62 -14.56 8.65 -12.82 -0.11 -14.68 16 23 C -0.08 -1.42 9.70 -39.58 -0.38 -1.80 16 24 C -0.13 -1.87 9.70 -39.58 -0.38 -2.25 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 31 H 0.09 1.63 7.24 -51.93 -0.38 1.26 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.70 8.07 -51.92 -0.42 0.28 16 34 H 0.07 1.16 5.98 -51.93 -0.31 0.85 16 35 H 0.10 2.33 6.03 -52.49 -0.32 2.02 16 36 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 37 H 0.12 3.26 6.16 -52.48 -0.32 2.93 16 38 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 39 H 0.13 2.39 7.65 -52.49 -0.40 1.99 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -28.95 335.72 -10.35 -39.30 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.49 Total: 8.17 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -4.84 Total: -19.35 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.05 Total: -46.60 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.95 -10.35 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166538897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.438 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds