Wall clock time and date at job start Tue Mar 31 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47156 * 269.99944 * 3 2 1 5 5 H 1.48507 * 109.46860 * 30.00071 * 3 2 1 6 6 H 1.48498 * 109.47222 * 149.99829 * 3 2 1 7 7 C 1.37877 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47106 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46826 * 179.97438 * 11 10 9 13 13 C 1.38923 * 119.99435 * 179.97438 * 12 11 10 14 14 C 1.39240 * 119.57764 * 0.02562 * 13 12 11 15 15 C 1.38059 * 119.22045 * 179.97438 * 14 13 12 16 16 C 1.39971 * 118.40320 * 359.97438 * 15 14 13 17 17 C 1.48358 * 120.45442 * 179.97438 * 16 15 14 18 18 C 1.39353 * 120.12288 * 359.75056 * 17 16 15 19 19 C 1.38018 * 119.87549 * 179.80840 * 18 17 16 20 20 C 1.38324 * 120.12019 * 0.44334 * 19 18 17 21 21 C 1.38318 * 120.25010 * 359.78769 * 20 19 18 22 22 C 1.38023 * 120.12394 * 359.97438 * 21 20 19 23 23 C 1.39171 * 119.09053 * 359.97438 * 16 15 14 24 24 N 1.31815 * 120.68590 * 0.28004 * 23 16 15 25 25 H 0.97003 * 119.99772 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47357 * 59.99950 * 9 7 2 27 27 H 1.09003 * 109.46886 * 300.00423 * 9 7 2 28 28 H 1.08992 * 109.47385 * 60.00026 * 10 9 7 29 29 H 1.09003 * 109.47238 * 299.99859 * 10 9 7 30 30 H 1.09000 * 109.46668 * 60.00147 * 11 10 9 31 31 H 1.08999 * 109.47333 * 299.99662 * 11 10 9 32 32 H 0.96996 * 120.00446 * 0.02562 * 12 11 10 33 33 H 1.07995 * 120.38512 * 0.02562 * 14 13 12 34 34 H 1.08002 * 120.79336 * 179.97438 * 15 14 13 35 35 H 1.07998 * 120.06203 * 0.02562 * 18 17 16 36 36 H 1.07996 * 119.93613 * 180.20752 * 19 18 17 37 37 H 1.07995 * 119.87085 * 179.76564 * 20 19 18 38 38 H 1.08001 * 119.94039 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.05930 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.65341 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9693 -7.4103 -0.0024 14 6 0.5985 -7.6546 -0.0025 15 6 0.1464 -8.9591 -0.0030 16 6 1.0917 -9.9914 -0.0039 17 6 0.6564 -11.4096 -0.0039 18 6 -0.7011 -11.7245 0.0022 19 6 -1.1005 -13.0456 -0.0019 20 6 -0.1560 -14.0563 -0.0027 21 6 1.1927 -13.7495 -0.0040 22 6 1.6035 -12.4318 -0.0049 23 6 2.4456 -9.6691 -0.0048 24 7 2.8375 -8.4105 0.0007 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8727 -3.6039 -0.8909 30 1 0.8541 -5.0446 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 3.3861 -5.9233 -0.0019 33 1 -0.1027 -6.8333 -0.0031 34 1 -0.9112 -9.1777 -0.0028 35 1 -1.4393 -10.9362 0.0065 36 1 -2.1522 -13.2907 -0.0005 37 1 -0.4730 -15.0886 -0.0021 38 1 1.9259 -14.5426 -0.0042 39 1 2.6568 -12.1936 -0.0054 40 1 3.1828 -10.4584 -0.0051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:04 Heat of formation + Delta-G solvation = 29.796870 kcal Electronic energy + Delta-G solvation = -19737.548037 eV Core-core repulsion = 16708.481836 eV Total energy + Delta-G solvation = -3029.066201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37430 -39.71482 -37.64894 -35.56676 -34.18816 -33.23656 -32.26937 -31.64460 -29.52352 -27.91291 -25.52022 -24.83793 -23.82799 -22.84150 -21.99290 -21.79053 -18.81700 -18.55171 -17.98275 -17.41566 -16.70837 -16.50353 -16.44653 -15.67526 -15.24878 -15.18517 -15.17733 -14.88031 -14.47270 -14.26914 -13.93300 -13.71326 -13.69316 -13.48434 -13.15693 -12.79821 -12.53561 -12.38445 -12.05023 -11.84612 -11.80376 -11.49204 -11.36651 -11.21392 -10.74646 -10.55928 -10.42139 -9.79574 -9.78880 -8.33615 -8.21292 -6.31687 -0.18219 0.36901 0.56541 1.03642 1.40569 1.41146 1.52208 2.15673 2.41371 2.78601 3.12560 3.20833 3.60230 3.75892 3.89587 3.98845 4.09532 4.16192 4.19356 4.20213 4.34602 4.37384 4.54814 4.64522 4.73117 4.81859 4.91213 4.93357 5.02401 5.08483 5.14331 5.21121 5.28486 5.48443 5.53360 5.68356 5.68763 5.70562 5.77728 5.83068 6.00323 6.15750 6.23292 6.60343 6.84864 7.17738 7.37459 8.90362 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.054140 B = 0.002226 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.049745 B =12573.152652 C =13064.452311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.105 4.105 11 C 0.139 3.861 12 N -0.718 5.718 13 C 0.389 3.611 14 C -0.248 4.248 15 C -0.023 4.023 16 C -0.174 4.174 17 C -0.038 4.038 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.120 4.120 22 C -0.131 4.131 23 C 0.154 3.846 24 N -0.566 5.566 25 H 0.264 0.736 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.405 0.595 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -28.034 -0.018 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.015 3.985 12 N -0.349 5.349 13 C 0.153 3.847 14 C -0.273 4.273 15 C -0.048 4.048 16 C -0.179 4.179 17 C -0.039 4.039 18 C -0.151 4.151 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.005 4.005 24 N -0.284 5.284 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.241 0.759 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.487 -27.514 -0.007 27.518 hybrid contribution -0.327 1.189 -0.010 1.233 sum 0.160 -26.324 -0.018 26.325 Atomic orbital electron populations 1.70081 1.07660 1.27784 1.51566 1.25953 0.95796 1.03284 0.94807 0.85470 0.78664 0.78609 0.78440 1.19858 1.20784 1.18868 1.21674 0.93584 0.92338 1.50596 0.92181 1.18915 0.94273 0.92377 0.95502 1.21584 0.98662 0.92557 1.01497 1.21390 0.91585 0.84334 1.01208 1.44706 1.09800 1.01315 1.79052 1.18723 0.89711 0.85887 0.90349 1.21558 0.94459 0.98937 1.12342 1.21649 1.00838 0.90719 0.91566 1.19572 0.94342 0.93403 1.10548 1.18688 0.94075 0.90830 1.00258 1.21431 0.94970 0.97625 1.01057 1.21379 1.00845 0.92337 0.99427 1.21534 0.93189 1.00351 1.00043 1.21391 0.96803 0.96355 0.99278 1.21437 0.99802 0.92715 1.00959 1.22897 0.94454 0.91795 0.91330 1.67156 1.38740 1.00397 1.22106 0.92745 0.98330 0.98330 0.92248 0.92217 0.91975 0.91978 0.75899 0.84312 0.82604 0.85070 0.84108 0.84012 0.83867 0.84696 0.80600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.36 4.97 29.84 0.15 1.51 16 10 C -0.11 -4.05 5.27 30.59 0.16 -3.89 16 11 C 0.14 4.49 4.88 86.38 0.42 4.91 16 12 N -0.72 -21.58 5.73 -345.00 -1.98 -23.55 16 13 C 0.39 11.60 7.64 133.10 1.02 12.62 16 14 C -0.25 -6.61 9.31 22.47 0.21 -6.40 16 15 C -0.02 -0.51 9.52 22.65 0.22 -0.30 16 16 C -0.17 -3.90 5.89 -19.94 -0.12 -4.02 16 17 C -0.04 -0.73 5.88 -20.05 -0.12 -0.85 16 18 C -0.13 -2.26 9.44 22.49 0.21 -2.04 16 19 C -0.12 -1.71 10.03 22.24 0.22 -1.49 16 20 C -0.13 -1.71 10.04 22.31 0.22 -1.48 16 21 C -0.12 -1.62 10.03 22.24 0.22 -1.40 16 22 C -0.13 -2.14 9.44 22.49 0.21 -1.93 16 23 C 0.15 3.67 10.59 84.92 0.90 4.57 16 24 N -0.57 -16.47 10.38 -192.41 -2.00 -18.47 16 25 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.00 7.92 -2.39 -0.02 1.98 16 31 H 0.06 2.00 7.92 -2.39 -0.02 1.98 16 32 H 0.41 11.68 8.59 -92.71 -0.80 10.88 16 33 H 0.14 3.52 6.68 -2.91 -0.02 3.50 16 34 H 0.16 2.63 6.32 -2.91 -0.02 2.62 16 35 H 0.13 1.87 6.27 -2.91 -0.02 1.85 16 36 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.14 1.76 6.23 -2.91 -0.02 1.74 16 40 H 0.18 3.12 6.21 -2.91 -0.02 3.10 16 Total: -1.00 -65.91 336.69 3.22 -62.69 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.25 Total: 18.75 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.63 Total: -29.83 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.69 Total: -97.44 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.91 3.22 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.489 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds