Wall clock time and date at job start Tue Mar 31 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48495 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47072 * 300.00272 * 3 2 1 6 6 H 1.48495 * 109.46980 * 60.00056 * 3 2 1 7 7 C 1.37872 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00612 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47003 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47066 * 179.97438 * 11 10 9 13 13 C 1.39473 * 119.99919 * 180.02562 * 12 11 10 14 14 C 1.39050 * 119.95280 * 180.02562 * 13 12 11 15 15 C 1.37826 * 120.04814 * 179.74017 * 14 13 12 16 16 C 1.39446 * 119.95149 * 0.25879 * 15 14 13 17 17 C 1.48270 * 120.04591 * 179.97438 * 16 15 14 18 18 C 1.39817 * 120.90903 * 359.72783 * 17 16 15 19 19 C 1.37945 * 119.01531 * 179.74756 * 18 17 16 20 20 N 1.31951 * 120.88483 * 0.53057 * 19 18 17 21 21 C 1.31943 * 122.01217 * 359.71854 * 20 19 18 22 22 C 1.37940 * 120.88480 * 0.02562 * 21 20 19 23 23 C 1.39452 * 119.90428 * 0.02562 * 16 15 14 24 24 C 1.37820 * 119.95380 * 359.97438 * 23 16 15 25 25 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47273 * 60.00544 * 9 7 2 27 27 H 1.08998 * 109.47778 * 300.00322 * 9 7 2 28 28 H 1.08997 * 109.47410 * 60.00629 * 10 9 7 29 29 H 1.09001 * 109.46949 * 299.99523 * 10 9 7 30 30 H 1.09002 * 109.47241 * 60.00027 * 11 10 9 31 31 H 1.08999 * 109.47265 * 300.00193 * 11 10 9 32 32 H 0.97002 * 120.00280 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.97859 * 0.02562 * 14 13 12 34 34 H 1.07999 * 120.02488 * 180.27576 * 15 14 13 35 35 H 1.07993 * 120.49199 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.55936 * 180.22502 * 19 18 17 37 37 H 1.07997 * 119.55815 * 179.97438 * 21 20 19 38 38 H 1.08010 * 120.48962 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.02063 * 180.02562 * 23 16 15 40 40 H 1.08000 * 119.97461 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9672 -7.4156 -0.0030 14 6 2.8716 -8.4717 -0.0030 15 6 2.4143 -9.7719 0.0012 16 6 1.0436 -10.0278 0.0001 17 6 0.5493 -11.4257 0.0040 18 6 1.4409 -12.5027 0.0032 19 6 0.9384 -13.7873 0.0124 20 7 -0.3630 -14.0056 0.0112 21 6 -1.2378 -13.0179 0.0069 22 6 -0.8211 -11.7030 0.0029 23 6 0.1383 -8.9671 -0.0059 24 6 0.5999 -7.6685 -0.0101 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6043 -0.8906 30 1 0.8538 -5.0446 -0.8914 31 1 0.8532 -5.0451 0.8885 32 1 3.3858 -5.9234 -0.0014 33 1 3.9332 -8.2731 -0.0017 34 1 3.1171 -10.5919 0.0057 35 1 2.5072 -12.3314 -0.0007 36 1 1.6192 -14.6258 0.0155 37 1 -2.2943 -13.2420 0.0058 38 1 -1.5429 -10.8994 -0.0010 39 1 -0.9238 -9.1631 -0.0063 40 1 -0.1009 -6.8467 -0.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:24 Heat of formation + Delta-G solvation = 42.235133 kcal Electronic energy + Delta-G solvation = -19703.335378 eV Core-core repulsion = 16674.808541 eV Total energy + Delta-G solvation = -3028.526837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44874 -39.20960 -36.36632 -34.04246 -32.82636 -31.76122 -31.29404 -30.75787 -28.51027 -26.35352 -24.25324 -23.83317 -23.02944 -21.90216 -20.88974 -20.34025 -17.88769 -16.94424 -16.58164 -16.23676 -15.96915 -15.29002 -14.94198 -14.72620 -14.52144 -14.13699 -14.05974 -13.79979 -13.67083 -13.19927 -13.17965 -12.40450 -12.06218 -11.99826 -11.89880 -11.72853 -11.04623 -10.94323 -10.70825 -10.69487 -10.60241 -9.93557 -9.66844 -9.55815 -9.36959 -9.33623 -9.19297 -9.03198 -8.44501 -7.23049 -6.09146 -4.12151 0.59612 0.96538 1.40320 1.95036 3.25238 3.33021 3.36403 3.54775 3.58301 4.00227 4.26350 4.38688 4.42629 4.50835 4.81287 4.86547 4.92041 4.98148 5.25817 5.27069 5.41897 5.47501 5.50042 5.57484 5.61814 5.65183 5.74616 5.94488 5.98786 6.02189 6.27394 6.33902 6.48053 6.51647 6.53960 6.60361 6.80189 6.88433 7.38123 7.54414 7.66144 7.78823 7.80276 7.89227 8.30695 8.94493 9.52617 11.02169 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.052306 B = 0.002206 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.187395 B =12689.555913 C =13198.977504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.736 5.736 13 C 0.240 3.760 14 C -0.207 4.207 15 C -0.046 4.046 16 C -0.142 4.142 17 C 0.031 3.969 18 C -0.181 4.181 19 C 0.102 3.898 20 N -0.501 5.501 21 C 0.103 3.897 22 C -0.180 4.180 23 C -0.044 4.044 24 C -0.202 4.202 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -23.536 0.001 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.361 5.361 13 C 0.132 3.868 14 C -0.230 4.230 15 C -0.065 4.065 16 C -0.145 4.145 17 C 0.023 3.977 18 C -0.201 4.201 19 C -0.054 4.054 20 N -0.211 5.211 21 C -0.053 4.053 22 C -0.200 4.200 23 C -0.063 4.063 24 C -0.225 4.225 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.463 -24.079 0.002 24.124 hybrid contribution 1.096 2.025 0.000 2.303 sum 2.559 -22.054 0.002 22.202 Atomic orbital electron populations 1.69966 1.06058 1.26655 1.50613 1.25031 0.94883 0.99370 0.95203 0.86517 0.80063 0.83664 0.77652 1.19750 1.20952 1.20949 1.21232 0.93057 0.90917 1.50895 0.92599 1.19034 0.93821 0.90951 0.97541 1.21861 0.99809 0.93221 1.00976 1.21697 0.92216 0.85796 1.00923 1.45144 1.09328 1.02433 1.79153 1.18092 0.92960 0.85054 0.90648 1.20519 0.98848 0.91660 1.11939 1.20865 0.94236 0.95988 0.95451 1.18309 0.93385 0.90779 1.11991 1.19173 0.92986 0.92714 0.92843 1.22178 1.00877 0.93226 1.03832 1.22633 0.91893 0.95919 0.94998 1.67645 1.03313 1.36759 1.13378 1.22643 0.99470 0.88359 0.94874 1.22214 0.95779 0.98449 1.03567 1.20945 0.98962 0.91448 0.94969 1.20677 0.93805 0.97257 1.10743 0.92938 0.96314 0.96325 0.92712 0.92718 0.92261 0.92257 0.76576 0.85988 0.86037 0.84817 0.82975 0.82905 0.84690 0.85912 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.82 4.90 -4.04 -0.02 1.80 16 12 N -0.74 -9.81 5.72 -58.61 -0.34 -10.15 16 13 C 0.24 3.10 6.65 -83.78 -0.56 2.54 16 14 C -0.21 -2.33 9.88 -39.43 -0.39 -2.72 16 15 C -0.05 -0.49 9.44 -39.28 -0.37 -0.86 16 16 C -0.14 -1.59 5.88 -104.87 -0.62 -2.20 16 17 C 0.03 0.32 5.91 -104.59 -0.62 -0.30 16 18 C -0.18 -1.67 9.50 -39.10 -0.37 -2.04 16 19 C 0.10 0.95 11.17 -17.61 -0.20 0.75 16 20 N -0.50 -5.47 10.35 -13.35 -0.14 -5.61 16 21 C 0.10 0.98 11.17 -17.61 -0.20 0.78 16 22 C -0.18 -1.72 9.50 -39.10 -0.37 -2.09 16 23 C -0.04 -0.50 9.44 -39.28 -0.37 -0.87 16 24 C -0.20 -2.56 9.29 -39.43 -0.37 -2.93 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.06 0.94 7.95 -51.93 -0.41 0.52 16 32 H 0.40 4.76 8.48 -40.82 -0.35 4.42 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.98 6.29 -52.49 -0.33 0.65 16 35 H 0.13 0.95 6.33 -52.49 -0.33 0.61 16 36 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.14 1.04 6.34 -52.48 -0.33 0.71 16 39 H 0.12 1.13 6.29 -52.48 -0.33 0.80 16 40 H 0.13 1.61 6.71 -52.49 -0.35 1.26 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -30.87 336.87 -10.17 -41.04 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.35 Total: 2.22 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -5.14 Total: -23.24 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.26 Total: -41.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.87 -10.17 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.275 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds