Wall clock time and date at job start Tue Mar 31 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48495 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47072 * 300.00272 * 3 2 1 6 6 H 1.48495 * 109.46980 * 60.00056 * 3 2 1 7 7 C 1.37872 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00612 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47003 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47066 * 179.97438 * 11 10 9 13 13 C 1.39473 * 119.99919 * 180.02562 * 12 11 10 14 14 C 1.39050 * 119.95280 * 180.02562 * 13 12 11 15 15 C 1.37826 * 120.04814 * 179.74017 * 14 13 12 16 16 C 1.39446 * 119.95149 * 0.25879 * 15 14 13 17 17 C 1.48270 * 120.04591 * 179.97438 * 16 15 14 18 18 C 1.39817 * 120.90903 * 359.72783 * 17 16 15 19 19 C 1.37945 * 119.01531 * 179.74756 * 18 17 16 20 20 N 1.31951 * 120.88483 * 0.53057 * 19 18 17 21 21 C 1.31943 * 122.01217 * 359.71854 * 20 19 18 22 22 C 1.37940 * 120.88480 * 0.02562 * 21 20 19 23 23 C 1.39452 * 119.90428 * 0.02562 * 16 15 14 24 24 C 1.37820 * 119.95380 * 359.97438 * 23 16 15 25 25 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47273 * 60.00544 * 9 7 2 27 27 H 1.08998 * 109.47778 * 300.00322 * 9 7 2 28 28 H 1.08997 * 109.47410 * 60.00629 * 10 9 7 29 29 H 1.09001 * 109.46949 * 299.99523 * 10 9 7 30 30 H 1.09002 * 109.47241 * 60.00027 * 11 10 9 31 31 H 1.08999 * 109.47265 * 300.00193 * 11 10 9 32 32 H 0.97002 * 120.00280 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.97859 * 0.02562 * 14 13 12 34 34 H 1.07999 * 120.02488 * 180.27576 * 15 14 13 35 35 H 1.07993 * 120.49199 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.55936 * 180.22502 * 19 18 17 37 37 H 1.07997 * 119.55815 * 179.97438 * 21 20 19 38 38 H 1.08010 * 120.48962 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.02063 * 180.02562 * 23 16 15 40 40 H 1.08000 * 119.97461 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9672 -7.4156 -0.0030 14 6 2.8716 -8.4717 -0.0030 15 6 2.4143 -9.7719 0.0012 16 6 1.0436 -10.0278 0.0001 17 6 0.5493 -11.4257 0.0040 18 6 1.4409 -12.5027 0.0032 19 6 0.9384 -13.7873 0.0124 20 7 -0.3630 -14.0056 0.0112 21 6 -1.2378 -13.0179 0.0069 22 6 -0.8211 -11.7030 0.0029 23 6 0.1383 -8.9671 -0.0059 24 6 0.5999 -7.6685 -0.0101 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6043 -0.8906 30 1 0.8538 -5.0446 -0.8914 31 1 0.8532 -5.0451 0.8885 32 1 3.3858 -5.9234 -0.0014 33 1 3.9332 -8.2731 -0.0017 34 1 3.1171 -10.5919 0.0057 35 1 2.5072 -12.3314 -0.0007 36 1 1.6192 -14.6258 0.0155 37 1 -2.2943 -13.2420 0.0058 38 1 -1.5429 -10.8994 -0.0010 39 1 -0.9238 -9.1631 -0.0063 40 1 -0.1009 -6.8467 -0.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:24 Heat of formation + Delta-G solvation = 25.727429 kcal Electronic energy + Delta-G solvation = -19704.051206 eV Core-core repulsion = 16674.808541 eV Total energy + Delta-G solvation = -3029.242665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20290 -40.08168 -37.52799 -35.64214 -34.14333 -32.74483 -32.49981 -31.57690 -29.70876 -27.85046 -25.37625 -24.82755 -24.09507 -22.99210 -21.92077 -21.70193 -18.71130 -18.53997 -17.82315 -17.16506 -16.72431 -16.53285 -16.33872 -16.25571 -15.50787 -14.90391 -14.80394 -14.75256 -14.62030 -14.35664 -14.25123 -13.98611 -13.65300 -13.44063 -12.82548 -12.75941 -12.68973 -12.47133 -12.32266 -11.93651 -11.65166 -11.46781 -11.45185 -11.19050 -10.58004 -10.39251 -10.25293 -10.05174 -9.89688 -8.22410 -8.18950 -6.33205 -0.20061 0.28148 0.53145 1.10514 1.39361 1.40003 1.52719 2.37456 2.50608 2.79569 3.11483 3.19148 3.62906 3.66771 3.77932 4.04225 4.08189 4.17364 4.21265 4.21470 4.28810 4.43840 4.54641 4.61761 4.73286 4.80630 4.91635 4.94033 4.94417 5.06392 5.12610 5.15871 5.22813 5.41390 5.48374 5.50050 5.69435 5.77245 5.82102 5.84154 5.88258 6.20028 6.36133 6.81852 6.85210 7.10248 7.36329 8.89563 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.052306 B = 0.002206 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.187395 B =12689.555913 C =13198.977504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.134 3.866 12 N -0.736 5.736 13 C 0.220 3.780 14 C -0.205 4.205 15 C -0.049 4.049 16 C -0.142 4.142 17 C 0.011 3.989 18 C -0.180 4.180 19 C 0.093 3.907 20 N -0.525 5.525 21 C 0.093 3.907 22 C -0.185 4.185 23 C -0.052 4.052 24 C -0.219 4.219 25 H 0.264 0.736 26 H -0.005 1.005 27 H -0.005 1.005 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.407 0.593 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -24.728 0.003 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.142 4.142 11 C 0.010 3.990 12 N -0.363 5.363 13 C 0.114 3.886 14 C -0.228 4.228 15 C -0.067 4.067 16 C -0.144 4.144 17 C 0.003 3.997 18 C -0.200 4.200 19 C -0.063 4.063 20 N -0.235 5.235 21 C -0.063 4.063 22 C -0.205 4.205 23 C -0.071 4.071 24 C -0.242 4.242 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.243 0.757 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.173 0.827 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.054 -25.306 0.004 25.490 hybrid contribution 0.555 2.249 -0.001 2.316 sum 3.609 -23.057 0.004 23.338 Atomic orbital electron populations 1.70095 1.07748 1.27741 1.51660 1.25981 0.95792 1.03400 0.94807 0.85402 0.79110 0.78832 0.77723 1.18531 1.20479 1.20470 1.21708 0.93614 0.92277 1.50448 0.92029 1.18934 0.94363 0.92695 0.95249 1.21570 0.98544 0.92669 1.01431 1.21273 0.92020 0.85263 1.00454 1.44847 1.09133 1.02043 1.80313 1.18272 0.93402 0.85029 0.91918 1.20762 0.99599 0.91435 1.10981 1.21194 0.94514 0.96506 0.94534 1.18525 0.93812 0.91122 1.10986 1.19320 0.93719 0.92649 0.93997 1.22434 1.01891 0.92815 1.02830 1.23088 0.91844 0.96913 0.94407 1.67679 1.04257 1.37551 1.14023 1.23019 1.00468 0.88216 0.94554 1.22427 0.95960 0.98984 1.03110 1.21146 1.00057 0.91056 0.94799 1.20770 0.93966 0.97750 1.11704 0.92756 0.98627 0.98638 0.92172 0.92179 0.92860 0.92859 0.75718 0.84104 0.83355 0.82653 0.80533 0.80878 0.83411 0.84413 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 11 C 0.13 4.24 4.90 86.38 0.42 4.66 16 12 N -0.74 -19.17 5.72 -339.34 -1.94 -21.11 16 13 C 0.22 5.49 6.65 38.32 0.25 5.75 16 14 C -0.21 -4.22 9.88 22.37 0.22 -4.00 16 15 C -0.05 -0.91 9.44 22.46 0.21 -0.70 16 16 C -0.14 -2.94 5.88 -20.03 -0.12 -3.05 16 17 C 0.01 0.21 5.91 -19.84 -0.12 0.09 16 18 C -0.18 -2.89 9.50 22.58 0.21 -2.68 16 19 C 0.09 1.54 11.17 84.61 0.95 2.49 16 20 N -0.52 -10.66 10.35 -196.15 -2.03 -12.69 16 21 C 0.09 1.64 11.17 84.61 0.95 2.59 16 22 C -0.19 -3.27 9.50 22.58 0.21 -3.06 16 23 C -0.05 -1.13 9.44 22.46 0.21 -0.92 16 24 C -0.22 -5.54 9.29 22.37 0.21 -5.33 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.73 7.93 -2.39 -0.02 1.71 16 31 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 32 H 0.41 9.20 8.48 -92.71 -0.79 8.42 16 33 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.15 1.89 6.29 -2.91 -0.02 1.87 16 35 H 0.16 1.68 6.33 -2.91 -0.02 1.66 16 36 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.15 2.08 6.34 -2.91 -0.02 2.07 16 39 H 0.14 2.44 6.29 -2.91 -0.02 2.42 16 40 H 0.12 3.13 6.71 -2.91 -0.02 3.11 16 Total: -1.00 -66.43 336.87 3.22 -63.21 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.26 Total: 16.57 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.62 Total: -35.93 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -3.69 Total: -89.33 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.43 3.22 -63.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.933 kcal (2) G-P(sol) polarization free energy of solvation -66.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds