Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47050 * 240.00013 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46906 * 119.99813 * 3 2 1 7 7 C 1.37878 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47425 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47370 * 180.02562 * 11 10 9 13 13 C 1.39691 * 120.00280 * 180.02562 * 12 11 10 14 14 C 1.39004 * 120.01479 * 359.97324 * 13 12 11 15 15 C 1.38159 * 120.16923 * 180.02562 * 14 13 12 16 16 C 1.38090 * 120.20314 * 359.78725 * 15 14 13 17 17 C 1.39354 * 120.02260 * 0.46648 * 16 15 14 18 18 C 1.48400 * 120.08694 * 179.78501 * 17 16 15 19 19 C 1.39762 * 120.53390 * 359.73068 * 18 17 16 20 20 C 1.38417 * 118.31603 * 179.97438 * 19 18 17 21 21 C 1.38312 * 119.27816 * 0.25358 * 20 19 18 22 22 N 1.31888 * 121.02698 * 359.44795 * 21 20 19 23 23 C 1.31743 * 121.85227 * 0.58864 * 22 21 20 24 24 C 1.38687 * 120.01349 * 179.97438 * 13 12 11 25 25 H 0.96995 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47162 * 59.99836 * 9 7 2 27 27 H 1.09000 * 109.47320 * 300.00021 * 9 7 2 28 28 H 1.08999 * 109.47515 * 59.99524 * 10 9 7 29 29 H 1.09008 * 109.46732 * 299.99972 * 10 9 7 30 30 H 1.08994 * 109.47299 * 59.99674 * 11 10 9 31 31 H 1.09008 * 109.46976 * 299.99618 * 11 10 9 32 32 H 0.97007 * 119.99973 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.91194 * 0.02562 * 14 13 12 34 34 H 1.08007 * 119.90073 * 180.02562 * 15 14 13 35 35 H 1.07994 * 119.99169 * 180.23135 * 16 15 14 36 36 H 1.08007 * 120.84501 * 359.97438 * 19 18 17 37 37 H 1.08002 * 120.35763 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.48262 * 179.72149 * 21 20 19 39 39 H 1.08004 * 119.70358 * 179.70730 * 23 22 21 40 40 H 1.07995 * 120.10020 * 359.95202 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0030 13 6 1.9669 -7.4176 0.0023 14 6 0.6003 -7.6720 0.0004 15 6 0.1364 -8.9734 0.0002 16 6 1.0272 -10.0285 -0.0026 17 6 2.3989 -9.7829 0.0047 18 6 3.3575 -10.9158 0.0066 19 6 2.8972 -12.2354 0.0068 20 6 3.8316 -13.2567 0.0081 21 6 5.1783 -12.9414 0.0145 22 7 5.5826 -11.6860 0.0084 23 6 4.7305 -10.6812 0.0076 24 6 2.8679 -8.4719 0.0035 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8714 -3.6039 0.8922 29 1 2.8727 -3.6046 -0.8878 30 1 0.8548 -5.0450 -0.8894 31 1 0.8528 -5.0447 0.8906 32 1 3.3862 -5.9233 0.0040 33 1 -0.1005 -6.8503 -0.0010 34 1 -0.9264 -9.1661 -0.0018 35 1 0.6608 -11.0444 -0.0065 36 1 1.8393 -12.4529 0.0060 37 1 3.5124 -14.2885 0.0087 38 1 5.9101 -13.7356 0.0200 39 1 5.1000 -9.6663 0.0074 40 1 3.9301 -8.2766 0.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = 43.607275 kcal Electronic energy + Delta-G solvation = -19823.527029 eV Core-core repulsion = 16795.059692 eV Total energy + Delta-G solvation = -3028.467337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55539 -39.13702 -36.22362 -33.86851 -33.03451 -32.34130 -31.62870 -29.59532 -28.64372 -26.27485 -24.37444 -24.07164 -22.94710 -21.93518 -20.61358 -20.28003 -17.94862 -16.90020 -16.62200 -16.30150 -15.94317 -15.36338 -14.90263 -14.86765 -14.46332 -14.24987 -13.87118 -13.78515 -13.56259 -13.25678 -13.09979 -12.35204 -12.12343 -11.96986 -11.82874 -11.37262 -11.20238 -10.95866 -10.69138 -10.62054 -10.52041 -10.03682 -9.78214 -9.69628 -9.59348 -9.50918 -9.18144 -8.40630 -8.35174 -7.28476 -6.05645 -4.08615 0.40375 0.97816 1.58178 1.85835 3.30074 3.34697 3.36785 3.52753 3.61825 4.02900 4.13667 4.41666 4.46016 4.52084 4.63704 4.74571 4.92627 5.10993 5.21329 5.30287 5.34812 5.41998 5.50333 5.60921 5.68773 5.71056 5.80084 5.86229 6.01895 6.06940 6.31838 6.40126 6.47813 6.54296 6.59722 6.61137 6.88032 6.93641 7.48759 7.57976 7.70220 7.70580 7.89926 7.92789 8.34523 8.97597 9.55794 11.05608 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035880 B = 0.002397 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.184880 B =11679.247679 C =12433.681784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.120 3.880 12 N -0.742 5.742 13 C 0.228 3.772 14 C -0.192 4.192 15 C -0.069 4.069 16 C -0.176 4.176 17 C -0.006 4.006 18 C -0.085 4.085 19 C -0.070 4.070 20 C -0.171 4.171 21 C 0.090 3.910 22 N -0.483 5.483 23 C 0.107 3.893 24 C -0.191 4.191 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.398 0.602 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -25.722 0.019 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.369 5.369 13 C 0.122 3.878 14 C -0.215 4.215 15 C -0.087 4.087 16 C -0.196 4.196 17 C -0.007 4.007 18 C -0.087 4.087 19 C -0.095 4.095 20 C -0.191 4.191 21 C -0.067 4.067 22 N -0.191 5.191 23 C -0.050 4.050 24 C -0.214 4.214 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.671 -25.243 0.015 25.672 hybrid contribution -0.184 0.859 0.000 0.878 sum 4.487 -24.384 0.015 24.794 Atomic orbital electron populations 1.69942 1.06055 1.26844 1.50509 1.25025 0.94877 0.99321 0.95215 0.86635 0.79575 0.83020 0.78641 1.20215 1.21243 1.20221 1.21166 0.92985 0.90958 1.51053 0.92715 1.19019 0.93823 0.90937 0.97495 1.21853 0.99786 0.93270 1.00936 1.21631 0.92185 0.85799 1.00702 1.45065 1.09093 1.02178 1.80562 1.17795 0.92749 0.84935 0.92331 1.20831 0.93763 0.97540 1.09334 1.20797 0.99233 0.91908 0.96808 1.20816 0.91953 0.98783 1.08082 1.18222 0.92314 0.90971 0.99213 1.19874 0.94484 0.93468 1.00917 1.21713 1.00586 0.91685 0.95541 1.22098 0.94411 1.00391 1.02167 1.22810 0.94489 0.93756 0.95621 1.67667 1.39485 1.00165 1.11788 1.22972 0.88751 0.98578 0.94727 1.20549 0.98753 0.90914 1.11191 0.92854 0.96353 0.96360 0.92750 0.92761 0.92477 0.92481 0.76731 0.85675 0.86043 0.86554 0.84450 0.84669 0.82832 0.82462 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 1.94 4.91 -4.04 -0.02 1.92 16 12 N -0.74 -10.37 5.73 -58.67 -0.34 -10.71 16 13 C 0.23 3.07 6.65 -83.83 -0.56 2.52 16 14 C -0.19 -2.51 9.31 -39.33 -0.37 -2.88 16 15 C -0.07 -0.77 10.03 -39.66 -0.40 -1.17 16 16 C -0.18 -1.89 9.44 -39.22 -0.37 -2.26 16 17 C -0.01 -0.07 5.87 -104.92 -0.62 -0.68 16 18 C -0.09 -0.90 5.89 -104.75 -0.62 -1.52 16 19 C -0.07 -0.60 9.53 -38.95 -0.37 -0.97 16 20 C -0.17 -1.28 10.10 -39.49 -0.40 -1.68 16 21 C 0.09 0.78 11.17 -17.50 -0.20 0.58 16 22 N -0.48 -5.41 10.35 -12.97 -0.13 -5.54 16 23 C 0.11 1.16 10.60 -17.20 -0.18 0.98 16 24 C -0.19 -2.32 9.28 -39.04 -0.36 -2.68 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 31 H 0.06 0.93 7.95 -51.92 -0.41 0.52 16 32 H 0.40 5.03 8.48 -40.82 -0.35 4.68 16 33 H 0.13 1.63 6.72 -52.48 -0.35 1.28 16 34 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.12 0.97 6.27 -52.49 -0.33 0.64 16 36 H 0.14 0.91 6.32 -52.48 -0.33 0.58 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.16 1.50 6.23 -52.48 -0.33 1.17 16 40 H 0.12 1.27 6.23 -52.49 -0.33 0.94 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -31.08 336.75 -10.17 -41.25 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.34 Total: 2.43 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -5.15 Total: -23.13 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.27 Total: -42.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.08 -10.17 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.857 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds