Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47050 * 240.00013 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46906 * 119.99813 * 3 2 1 7 7 C 1.37878 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47425 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47370 * 180.02562 * 11 10 9 13 13 C 1.39691 * 120.00280 * 180.02562 * 12 11 10 14 14 C 1.39004 * 120.01479 * 359.97324 * 13 12 11 15 15 C 1.38159 * 120.16923 * 180.02562 * 14 13 12 16 16 C 1.38090 * 120.20314 * 359.78725 * 15 14 13 17 17 C 1.39354 * 120.02260 * 0.46648 * 16 15 14 18 18 C 1.48400 * 120.08694 * 179.78501 * 17 16 15 19 19 C 1.39762 * 120.53390 * 359.73068 * 18 17 16 20 20 C 1.38417 * 118.31603 * 179.97438 * 19 18 17 21 21 C 1.38312 * 119.27816 * 0.25358 * 20 19 18 22 22 N 1.31888 * 121.02698 * 359.44795 * 21 20 19 23 23 C 1.31743 * 121.85227 * 0.58864 * 22 21 20 24 24 C 1.38687 * 120.01349 * 179.97438 * 13 12 11 25 25 H 0.96995 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47162 * 59.99836 * 9 7 2 27 27 H 1.09000 * 109.47320 * 300.00021 * 9 7 2 28 28 H 1.08999 * 109.47515 * 59.99524 * 10 9 7 29 29 H 1.09008 * 109.46732 * 299.99972 * 10 9 7 30 30 H 1.08994 * 109.47299 * 59.99674 * 11 10 9 31 31 H 1.09008 * 109.46976 * 299.99618 * 11 10 9 32 32 H 0.97007 * 119.99973 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.91194 * 0.02562 * 14 13 12 34 34 H 1.08007 * 119.90073 * 180.02562 * 15 14 13 35 35 H 1.07994 * 119.99169 * 180.23135 * 16 15 14 36 36 H 1.08007 * 120.84501 * 359.97438 * 19 18 17 37 37 H 1.08002 * 120.35763 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.48262 * 179.72149 * 21 20 19 39 39 H 1.08004 * 119.70358 * 179.70730 * 23 22 21 40 40 H 1.07995 * 120.10020 * 359.95202 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0030 13 6 1.9669 -7.4176 0.0023 14 6 0.6003 -7.6720 0.0004 15 6 0.1364 -8.9734 0.0002 16 6 1.0272 -10.0285 -0.0026 17 6 2.3989 -9.7829 0.0047 18 6 3.3575 -10.9158 0.0066 19 6 2.8972 -12.2354 0.0068 20 6 3.8316 -13.2567 0.0081 21 6 5.1783 -12.9414 0.0145 22 7 5.5826 -11.6860 0.0084 23 6 4.7305 -10.6812 0.0076 24 6 2.8679 -8.4719 0.0035 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8714 -3.6039 0.8922 29 1 2.8727 -3.6046 -0.8878 30 1 0.8548 -5.0450 -0.8894 31 1 0.8528 -5.0447 0.8906 32 1 3.3862 -5.9233 0.0040 33 1 -0.1005 -6.8503 -0.0010 34 1 -0.9264 -9.1661 -0.0018 35 1 0.6608 -11.0444 -0.0065 36 1 1.8393 -12.4529 0.0060 37 1 3.5124 -14.2885 0.0087 38 1 5.9101 -13.7356 0.0200 39 1 5.1000 -9.6663 0.0074 40 1 3.9301 -8.2766 0.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = 26.698923 kcal Electronic energy + Delta-G solvation = -19824.260230 eV Core-core repulsion = 16795.059692 eV Total energy + Delta-G solvation = -3029.200538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29257 -40.03707 -37.45635 -35.54744 -34.09589 -33.23830 -32.99428 -30.67652 -29.68380 -27.88449 -25.42009 -24.90901 -24.30524 -22.91221 -21.94390 -21.47198 -18.72606 -18.52720 -17.75069 -17.29406 -16.77777 -16.55174 -16.32046 -16.30175 -15.74535 -15.00839 -14.71265 -14.62225 -14.54246 -14.32103 -14.21852 -13.96174 -13.67980 -13.39785 -12.84467 -12.76228 -12.57666 -12.39856 -12.19846 -11.98677 -11.83342 -11.46465 -11.30829 -11.21063 -10.74688 -10.56321 -10.40041 -10.39416 -9.19382 -8.31208 -8.21555 -6.32559 -0.36004 0.32232 0.68351 1.00525 1.39903 1.42486 1.50417 2.38287 2.52693 2.76930 3.11924 3.17586 3.44997 3.70414 3.88717 3.98630 4.05595 4.16309 4.19003 4.22486 4.34560 4.40018 4.56624 4.59533 4.61512 4.81283 4.83934 4.95561 5.03976 5.07442 5.13525 5.15213 5.24447 5.40096 5.48406 5.61071 5.69948 5.73198 5.75831 5.82289 5.95051 6.20978 6.41536 6.83071 6.87349 7.01567 7.36665 8.90020 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035880 B = 0.002397 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.184880 B =11679.247679 C =12433.681784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.138 3.862 12 N -0.744 5.744 13 C 0.208 3.792 14 C -0.213 4.213 15 C -0.070 4.070 16 C -0.173 4.173 17 C -0.009 4.009 18 C -0.102 4.102 19 C -0.071 4.071 20 C -0.163 4.163 21 C 0.082 3.918 22 N -0.513 5.513 23 C 0.090 3.910 24 C -0.198 4.198 25 H 0.264 0.736 26 H -0.005 1.005 27 H -0.005 1.005 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.404 0.596 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.158 0.842 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -27.857 0.019 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.013 3.987 12 N -0.373 5.373 13 C 0.104 3.896 14 C -0.236 4.236 15 C -0.089 4.089 16 C -0.193 4.193 17 C -0.010 4.010 18 C -0.105 4.105 19 C -0.097 4.097 20 C -0.182 4.182 21 C -0.075 4.075 22 N -0.221 5.221 23 C -0.066 4.066 24 C -0.221 4.221 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.239 0.761 33 H 0.135 0.865 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.188 0.812 38 H 0.197 0.803 39 H 0.175 0.825 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.384 -27.408 0.016 27.932 hybrid contribution -0.401 1.337 0.000 1.396 sum 4.983 -26.071 0.016 26.543 Atomic orbital electron populations 1.70076 1.07736 1.27884 1.51475 1.25978 0.95799 1.03369 0.94747 0.85509 0.78276 0.78152 0.79164 1.19200 1.20873 1.19213 1.21646 0.93572 0.92317 1.50757 0.92121 1.18916 0.94324 0.92633 0.95233 1.21568 0.98556 0.92783 1.01298 1.21219 0.91952 0.85203 1.00277 1.44802 1.08866 1.01926 1.81661 1.17955 0.93303 0.84713 0.93615 1.20972 0.93630 0.98431 1.10532 1.21091 1.00684 0.91187 0.95911 1.21172 0.91507 1.00051 1.06550 1.18445 0.93093 0.91006 0.98491 1.19895 0.94085 0.94116 1.02361 1.22062 1.02091 0.91014 0.94512 1.22475 0.93576 1.01879 1.00286 1.23372 0.96023 0.93496 0.94562 1.67667 1.40202 1.01270 1.12998 1.23051 0.89226 0.98856 0.95508 1.20714 0.99177 0.91088 1.11072 0.92728 0.98625 0.98634 0.92308 0.92319 0.93006 0.93014 0.76070 0.86483 0.83718 0.83704 0.82208 0.81155 0.80301 0.82518 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.10 -4.08 5.27 30.59 0.16 -3.92 16 11 C 0.14 4.58 4.91 86.38 0.42 5.00 16 12 N -0.74 -21.04 5.73 -339.52 -1.95 -22.99 16 13 C 0.21 5.65 6.65 38.18 0.25 5.90 16 14 C -0.21 -5.57 9.31 22.43 0.21 -5.36 16 15 C -0.07 -1.48 10.03 22.22 0.22 -1.26 16 16 C -0.17 -3.34 9.44 22.50 0.21 -3.13 16 17 C -0.01 -0.19 5.87 -20.06 -0.12 -0.31 16 18 C -0.10 -2.01 5.89 -19.95 -0.12 -2.13 16 19 C -0.07 -1.02 9.53 22.68 0.22 -0.81 16 20 C -0.16 -1.89 10.10 22.33 0.23 -1.66 16 21 C 0.08 1.23 11.17 84.70 0.95 2.17 16 22 N -0.51 -10.98 10.35 -194.96 -2.02 -13.00 16 23 C 0.09 1.92 10.60 84.96 0.90 2.82 16 24 C -0.20 -4.76 9.28 22.62 0.21 -4.55 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 26 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.05 1.76 7.94 -2.39 -0.02 1.74 16 31 H 0.05 1.76 7.95 -2.38 -0.02 1.74 16 32 H 0.40 10.24 8.48 -92.70 -0.79 9.46 16 33 H 0.12 3.16 6.72 -2.91 -0.02 3.14 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.15 1.89 6.27 -2.91 -0.02 1.87 16 36 H 0.16 1.46 6.32 -2.91 -0.02 1.44 16 37 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.16 3.07 6.23 -2.91 -0.02 3.05 16 40 H 0.13 2.76 6.23 -2.91 -0.02 2.74 16 Total: -1.00 -67.82 336.75 3.20 -64.62 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.26 Total: 17.12 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.59 Total: -35.71 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.68 Total: -92.03 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.82 3.20 -64.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.324 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds