Wall clock time and date at job start Tue Mar 31 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38304 * 119.89434 * 2 1 4 4 C 1.38246 * 120.21041 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99420 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.00415 * 0.02562 * 4 3 2 7 7 N 1.39892 * 120.10074 * 179.97438 * 6 4 3 8 8 C 1.39567 * 119.79454 * 0.25491 * 6 4 3 9 9 N 1.39812 * 120.10747 * 179.69800 * 8 6 4 10 10 C 1.38729 * 119.99937 * 172.17763 * 9 8 6 11 11 C 1.39634 * 119.84356 * 318.08706 * 10 9 8 12 12 C 1.36300 * 120.15417 * 179.72009 * 11 10 9 13 13 C 1.40911 * 119.83708 * 0.57089 * 12 11 10 14 14 C 1.41091 * 120.15017 * 179.67404 * 13 12 11 15 15 H 1.08004 * 119.99614 * 33.85906 * 14 13 12 16 16 C 1.39819 * 120.00474 * 213.85895 * 14 13 12 17 17 N 1.30929 * 120.00083 * 358.41048 * 16 14 13 18 18 Si 1.86802 * 120.00254 * 178.41111 * 16 14 13 19 19 H 1.48500 * 109.47414 * 59.99799 * 18 16 14 20 20 H 1.48508 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46809 * 299.99534 * 18 16 14 22 22 C 1.40911 * 119.69985 * 359.70286 * 13 12 11 23 23 C 1.36290 * 119.84361 * 0.02562 * 22 13 12 24 24 C 1.38201 * 119.89367 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47117 * 89.99617 * 1 2 3 26 26 H 1.08995 * 109.47149 * 209.99629 * 1 2 3 27 27 H 1.08999 * 109.46869 * 329.99991 * 1 2 3 28 28 H 1.08003 * 119.89520 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47251 * 270.02170 * 5 4 3 30 30 H 1.09000 * 109.47086 * 30.02473 * 5 4 3 31 31 H 1.09003 * 109.46973 * 150.02450 * 5 4 3 32 32 H 0.97000 * 120.00638 * 0.02562 * 7 6 4 33 33 H 0.97001 * 120.00231 * 179.72673 * 7 6 4 34 34 H 0.96998 * 120.00023 * 352.17951 * 9 8 6 35 35 H 1.08000 * 119.92418 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.08197 * 180.29522 * 12 11 10 37 37 H 0.96998 * 120.00427 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.07718 * 179.97438 * 22 13 12 39 39 H 1.08001 * 119.92475 * 180.02562 * 23 22 13 40 40 H 1.08006 * 120.00268 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1990 0.0000 4 6 3.5788 1.2067 -0.0005 5 6 4.3250 2.5160 -0.0011 6 6 4.2789 0.0095 -0.0016 7 7 5.6778 0.0149 -0.0027 8 6 3.5835 -1.2006 -0.0075 9 7 4.2827 -2.4113 -0.0150 10 6 3.5991 -3.6081 0.1426 11 6 2.5760 -3.7046 1.0880 12 6 1.8964 -4.8757 1.2442 13 6 2.2365 -5.9940 0.4573 14 6 1.5420 -7.2115 0.6183 15 1 0.4922 -7.2048 0.8721 16 6 2.2126 -8.4267 0.4494 17 7 3.4774 -8.4350 0.1113 18 14 1.3040 -10.0386 0.7061 19 1 0.1656 -10.1220 -0.2439 20 1 2.2317 -11.1733 0.4671 21 1 0.7922 -10.1019 2.0988 22 6 3.2739 -5.8911 -0.4908 23 6 3.9415 -4.7123 -0.6404 24 6 2.1958 -1.1981 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6529 2.1324 0.0004 29 1 4.5041 2.8317 -1.0289 30 1 3.7320 3.2723 0.5132 31 1 5.2785 2.3910 0.5120 32 1 6.1597 0.8567 -0.0023 33 1 6.1661 -0.8233 0.0006 34 1 5.2458 -2.4144 -0.1304 35 1 2.3199 -2.8481 1.6940 36 1 1.1022 -4.9477 1.9724 37 1 3.9426 -9.2780 -0.0063 38 1 3.5399 -6.7445 -1.0969 39 1 4.7365 -4.6318 -1.3669 40 1 1.6541 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216099962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:15 Heat of formation + Delta-G solvation = 42.905319 kcal Electronic energy + Delta-G solvation = -21114.325958 eV Core-core repulsion = 18085.828182 eV Total energy + Delta-G solvation = -3028.497776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.81004 -37.83001 -35.31264 -34.81547 -33.12405 -31.48611 -30.16089 -29.37821 -28.39644 -26.76929 -25.49857 -24.52145 -21.71536 -21.18111 -20.05589 -19.85575 -17.52036 -17.35896 -16.66502 -15.94540 -15.29719 -15.09119 -14.16373 -14.10692 -13.88424 -13.49120 -13.34351 -13.07117 -12.99499 -12.68570 -12.36051 -12.20819 -12.07833 -11.76476 -11.64685 -11.36111 -11.16181 -11.11231 -10.97711 -10.55743 -10.49201 -10.21074 -9.93245 -9.75363 -9.29375 -9.13452 -7.76092 -7.60093 -7.17834 -6.63627 -6.26020 -4.31120 1.87684 2.01133 2.77867 3.01079 3.08284 3.10849 3.19097 3.92453 3.96925 4.26115 4.28922 4.68664 5.08581 5.18403 5.50676 5.59400 5.60739 5.65233 5.67666 5.81883 5.93502 5.94263 6.09851 6.18522 6.23805 6.35645 6.43942 6.63559 6.70940 6.84083 7.03474 7.06828 7.16116 7.24652 7.33442 7.45956 7.58162 7.64948 7.85703 7.94896 8.02601 8.23093 8.37326 8.45818 8.64433 8.91379 8.97809 10.28636 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.003767 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.451157 B = 7430.560674 C = 8168.041463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.099 4.099 6 C 0.136 3.864 7 N -0.886 5.886 8 C 0.161 3.839 9 N -0.674 5.674 10 C 0.034 3.966 11 C -0.116 4.116 12 C -0.198 4.198 13 C 0.096 3.904 14 C -0.462 4.462 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.814 5.814 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.135 4.135 23 C -0.127 4.127 24 C -0.155 4.155 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.389 0.611 34 H 0.388 0.612 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.278 0.722 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 13.955 -0.871 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.161 4.161 4 C -0.135 4.135 5 C -0.156 4.156 6 C 0.032 3.968 7 N -0.431 5.431 8 C 0.057 3.943 9 N -0.296 5.296 10 C -0.060 4.060 11 C -0.136 4.136 12 C -0.218 4.218 13 C 0.093 3.907 14 C -0.493 4.493 15 H 0.093 0.907 16 C -0.145 4.145 17 N -0.442 5.442 18 Si 0.740 3.260 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.178 4.178 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.222 0.778 33 H 0.217 0.783 34 H 0.222 0.778 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.107 0.893 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.614 13.657 -0.900 13.782 hybrid contribution 0.596 -0.860 0.141 1.056 sum 2.210 12.797 -0.759 13.009 Atomic orbital electron populations 1.20663 0.91930 1.02012 1.01600 1.19422 0.95333 0.92457 1.02476 1.20320 0.92482 0.96873 1.06392 1.18973 0.93662 0.92582 1.08298 1.20522 0.99273 0.94488 1.01318 1.17071 0.83708 0.91906 1.04120 1.42194 1.03086 1.09842 1.87989 1.17433 0.91631 0.84326 1.00925 1.41369 1.07478 1.01856 1.78919 1.17141 1.01387 0.85525 1.01978 1.20318 0.98616 0.97367 0.97347 1.20751 1.04033 0.94293 1.02769 1.17663 0.91820 0.91932 0.89237 1.19426 0.97436 0.90170 1.42279 0.90702 1.25849 0.94801 1.01070 0.92762 1.69779 1.09365 1.28555 1.36470 0.86267 0.79806 0.80176 0.79789 1.19049 1.20468 1.19132 1.21177 0.98796 0.95948 0.99544 1.20426 1.01380 0.94073 0.98907 1.20822 0.91809 0.98708 1.06507 0.91964 0.91826 0.92370 0.87188 0.92116 0.91922 0.92677 0.77786 0.78337 0.77794 0.88556 0.88612 0.91137 0.85304 0.89307 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16 2 C -0.09 -1.48 5.88 -104.61 -0.62 -2.09 16 3 C -0.14 -2.00 9.34 -39.55 -0.37 -2.37 16 4 C -0.13 -1.81 5.89 -104.45 -0.62 -2.43 16 5 C -0.10 -1.02 9.57 36.01 0.34 -0.68 16 6 C 0.14 2.06 6.76 -83.52 -0.56 1.50 16 7 N -0.89 -10.52 8.98 32.54 0.29 -10.23 16 8 C 0.16 2.84 6.43 -83.53 -0.54 2.30 16 9 N -0.67 -12.27 5.40 -8.16 -0.04 -12.31 16 10 C 0.03 0.72 5.88 -83.70 -0.49 0.23 16 11 C -0.12 -2.58 7.28 -39.76 -0.29 -2.87 16 12 C -0.20 -4.77 9.74 -39.27 -0.38 -5.15 16 13 C 0.10 2.51 5.55 -106.79 -0.59 1.92 16 14 C -0.46 -12.14 9.03 -37.91 -0.34 -12.48 16 15 H 0.07 1.89 7.84 -52.48 -0.41 1.47 16 16 C 0.07 1.75 5.40 -17.35 -0.09 1.66 16 17 N -0.81 -20.97 10.62 55.54 0.59 -20.38 16 18 Si 0.91 18.83 29.56 -169.99 -5.02 13.81 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.13 -3.42 8.60 -39.27 -0.34 -3.76 16 23 C -0.13 -2.91 9.90 -39.76 -0.39 -3.30 16 24 C -0.16 -2.79 7.67 -39.40 -0.30 -3.09 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 32 H 0.39 3.75 6.83 -40.82 -0.28 3.48 16 33 H 0.39 4.33 7.04 -40.82 -0.29 4.04 16 34 H 0.39 6.17 7.05 -40.82 -0.29 5.89 16 35 H 0.10 2.02 6.65 -52.49 -0.35 1.68 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.13 3.42 6.15 -52.49 -0.32 3.09 16 39 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.14 2.69 5.36 -52.48 -0.28 2.41 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -27.71 325.27 -9.57 -37.28 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -5.07 Total: 18.55 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -5.22 Total: -31.62 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.84 Total: -42.92 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.71 -9.57 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216099962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.185 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds