Wall clock time and date at job start Tue Mar 31 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38304 * 119.89434 * 2 1 4 4 C 1.38246 * 120.21041 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99420 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.00415 * 0.02562 * 4 3 2 7 7 N 1.39892 * 120.10074 * 179.97438 * 6 4 3 8 8 C 1.39567 * 119.79454 * 0.25491 * 6 4 3 9 9 N 1.39812 * 120.10747 * 179.69800 * 8 6 4 10 10 C 1.38729 * 119.99937 * 172.17763 * 9 8 6 11 11 C 1.39634 * 119.84356 * 318.08706 * 10 9 8 12 12 C 1.36300 * 120.15417 * 179.72009 * 11 10 9 13 13 C 1.40911 * 119.83708 * 0.57089 * 12 11 10 14 14 C 1.41091 * 120.15017 * 179.67404 * 13 12 11 15 15 H 1.08004 * 119.99614 * 33.85906 * 14 13 12 16 16 C 1.39819 * 120.00474 * 213.85895 * 14 13 12 17 17 N 1.30929 * 120.00083 * 358.41048 * 16 14 13 18 18 Si 1.86802 * 120.00254 * 178.41111 * 16 14 13 19 19 H 1.48500 * 109.47414 * 59.99799 * 18 16 14 20 20 H 1.48508 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46809 * 299.99534 * 18 16 14 22 22 C 1.40911 * 119.69985 * 359.70286 * 13 12 11 23 23 C 1.36290 * 119.84361 * 0.02562 * 22 13 12 24 24 C 1.38201 * 119.89367 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47117 * 89.99617 * 1 2 3 26 26 H 1.08995 * 109.47149 * 209.99629 * 1 2 3 27 27 H 1.08999 * 109.46869 * 329.99991 * 1 2 3 28 28 H 1.08003 * 119.89520 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47251 * 270.02170 * 5 4 3 30 30 H 1.09000 * 109.47086 * 30.02473 * 5 4 3 31 31 H 1.09003 * 109.46973 * 150.02450 * 5 4 3 32 32 H 0.97000 * 120.00638 * 0.02562 * 7 6 4 33 33 H 0.97001 * 120.00231 * 179.72673 * 7 6 4 34 34 H 0.96998 * 120.00023 * 352.17951 * 9 8 6 35 35 H 1.08000 * 119.92418 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.08197 * 180.29522 * 12 11 10 37 37 H 0.96998 * 120.00427 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.07718 * 179.97438 * 22 13 12 39 39 H 1.08001 * 119.92475 * 180.02562 * 23 22 13 40 40 H 1.08006 * 120.00268 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1990 0.0000 4 6 3.5788 1.2067 -0.0005 5 6 4.3250 2.5160 -0.0011 6 6 4.2789 0.0095 -0.0016 7 7 5.6778 0.0149 -0.0027 8 6 3.5835 -1.2006 -0.0075 9 7 4.2827 -2.4113 -0.0150 10 6 3.5991 -3.6081 0.1426 11 6 2.5760 -3.7046 1.0880 12 6 1.8964 -4.8757 1.2442 13 6 2.2365 -5.9940 0.4573 14 6 1.5420 -7.2115 0.6183 15 1 0.4922 -7.2048 0.8721 16 6 2.2126 -8.4267 0.4494 17 7 3.4774 -8.4350 0.1113 18 14 1.3040 -10.0386 0.7061 19 1 0.1656 -10.1220 -0.2439 20 1 2.2317 -11.1733 0.4671 21 1 0.7922 -10.1019 2.0988 22 6 3.2739 -5.8911 -0.4908 23 6 3.9415 -4.7123 -0.6404 24 6 2.1958 -1.1981 0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6529 2.1324 0.0004 29 1 4.5041 2.8317 -1.0289 30 1 3.7320 3.2723 0.5132 31 1 5.2785 2.3910 0.5120 32 1 6.1597 0.8567 -0.0023 33 1 6.1661 -0.8233 0.0006 34 1 5.2458 -2.4144 -0.1304 35 1 2.3199 -2.8481 1.6940 36 1 1.1022 -4.9477 1.9724 37 1 3.9426 -9.2780 -0.0063 38 1 3.5399 -6.7445 -1.0969 39 1 4.7365 -4.6318 -1.3669 40 1 1.6541 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216099962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:14 Heat of formation + Delta-G solvation = 28.794698 kcal Electronic energy + Delta-G solvation = -21114.937840 eV Core-core repulsion = 18085.828182 eV Total energy + Delta-G solvation = -3029.109658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.11922 -39.48925 -36.84100 -35.98490 -34.84728 -32.63871 -31.72636 -31.04581 -29.98304 -27.80842 -26.92269 -26.02339 -23.30293 -22.86551 -21.58494 -21.13546 -19.23674 -18.74990 -17.85098 -17.52689 -16.88383 -16.51925 -15.80050 -15.40336 -15.16571 -14.88613 -14.61804 -14.47372 -14.25453 -13.95036 -13.91200 -13.64408 -13.30080 -13.17784 -13.15635 -12.78272 -12.68533 -12.54525 -12.32441 -12.14920 -11.83814 -11.76745 -11.54579 -11.19231 -11.04331 -10.75724 -9.48348 -9.26313 -8.58130 -8.49304 -7.65621 -6.24179 0.59541 0.76754 1.06293 1.14183 1.39914 1.50814 1.53985 2.24914 2.61422 2.78622 3.07474 3.17136 3.69265 4.02132 4.15400 4.38305 4.41730 4.51315 4.52870 4.61669 4.79095 4.87572 4.90317 4.94802 4.95549 5.11602 5.14782 5.17186 5.25295 5.33967 5.37513 5.47244 5.61729 5.69991 5.71975 5.92015 6.00213 6.10606 6.19368 6.33501 6.51431 6.65737 6.82604 6.99154 7.02339 7.05936 7.14576 8.44751 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.003767 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.451157 B = 7430.560674 C = 8168.041463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.108 4.108 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.098 4.098 6 C 0.138 3.862 7 N -0.875 5.875 8 C 0.130 3.870 9 N -0.674 5.674 10 C 0.057 3.943 11 C -0.116 4.116 12 C -0.207 4.207 13 C 0.062 3.938 14 C -0.500 4.500 15 H 0.073 0.927 16 C 0.028 3.972 17 N -0.845 5.845 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.263 1.263 22 C -0.152 4.152 23 C -0.135 4.135 24 C -0.177 4.177 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.393 0.607 34 H 0.399 0.601 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.283 0.717 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 16.502 -0.745 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C -0.154 4.154 4 C -0.140 4.140 5 C -0.154 4.154 6 C 0.033 3.967 7 N -0.421 5.421 8 C 0.027 3.973 9 N -0.298 5.298 10 C -0.038 4.038 11 C -0.137 4.137 12 C -0.227 4.227 13 C 0.060 3.940 14 C -0.531 4.531 15 H 0.091 0.909 16 C -0.184 4.184 17 N -0.474 5.474 18 Si 0.807 3.193 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.187 1.187 22 C -0.172 4.172 23 C -0.156 4.156 24 C -0.200 4.200 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.221 0.779 34 H 0.235 0.765 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.096 16.274 -0.779 16.426 hybrid contribution 0.508 -1.328 0.079 1.424 sum 2.603 14.946 -0.700 15.187 Atomic orbital electron populations 1.20689 0.90440 1.02666 1.02255 1.19711 0.96652 0.92218 1.02485 1.20718 0.92962 0.97351 1.04360 1.19478 0.93974 0.93788 1.06718 1.20598 0.99647 0.92628 1.02557 1.17201 0.85034 0.91372 1.03091 1.42162 1.01932 1.10925 1.87053 1.17609 0.91771 0.84696 1.03183 1.41191 1.07914 1.01063 1.79657 1.17175 1.00185 0.86391 1.00039 1.20423 0.98658 0.97019 0.97583 1.20898 1.04427 0.94537 1.02792 1.17950 0.92891 0.92814 0.90346 1.19663 0.97671 0.91306 1.44441 0.90921 1.26688 0.95515 1.04159 0.92004 1.69861 1.10634 1.29602 1.37273 0.85193 0.78602 0.75777 0.79720 1.18493 1.19461 1.18738 1.21097 0.99727 0.96439 0.99940 1.20603 1.01782 0.93751 0.99478 1.20789 0.92285 0.98680 1.08275 0.91266 0.92868 0.90036 0.84389 0.90842 0.90387 0.91391 0.76170 0.77870 0.76469 0.87422 0.88113 0.90668 0.87056 0.87367 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 10.01 71.24 0.71 -1.83 16 2 C -0.11 -3.22 5.88 -19.86 -0.12 -3.34 16 3 C -0.13 -3.40 9.34 22.29 0.21 -3.20 16 4 C -0.13 -3.30 5.89 -19.75 -0.12 -3.41 16 5 C -0.10 -1.58 9.57 71.24 0.68 -0.90 16 6 C 0.14 3.86 6.76 38.28 0.26 4.12 16 7 N -0.88 -18.30 8.98 -50.97 -0.46 -18.75 16 8 C 0.13 4.46 6.43 38.32 0.25 4.71 16 9 N -0.67 -24.12 5.40 -179.74 -0.97 -25.09 16 10 C 0.06 2.50 5.88 38.72 0.23 2.73 16 11 C -0.12 -5.29 7.28 22.15 0.16 -5.12 16 12 C -0.21 -10.33 9.74 22.47 0.22 -10.11 16 13 C 0.06 3.42 5.55 -21.27 -0.12 3.30 16 14 C -0.50 -27.46 9.03 23.35 0.21 -27.25 16 15 H 0.07 3.84 7.84 -2.91 -0.02 3.82 16 16 C 0.03 1.43 5.40 85.21 0.46 1.89 16 17 N -0.85 -45.10 10.62 21.81 0.23 -44.86 16 18 Si 0.99 39.37 29.56 68.60 2.03 41.40 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 22 C -0.15 -8.08 8.60 22.47 0.19 -7.88 16 23 C -0.14 -6.32 9.90 22.15 0.22 -6.10 16 24 C -0.18 -6.35 7.67 22.39 0.17 -6.18 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 28 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 31 H 0.07 0.94 6.54 -2.39 -0.02 0.92 16 32 H 0.41 6.31 6.83 -92.71 -0.63 5.68 16 33 H 0.39 7.80 7.04 -92.71 -0.65 7.15 16 34 H 0.40 12.25 7.05 -92.71 -0.65 11.60 16 35 H 0.11 4.60 6.65 -2.91 -0.02 4.58 16 36 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 38 H 0.11 6.24 6.15 -2.91 -0.02 6.22 16 39 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.11 4.46 5.36 -2.91 -0.02 4.44 16 Total: -1.00 -61.99 325.27 3.60 -58.39 By element: Atomic # 1 Polarization: 48.34 SS G_CDS: -0.85 Total: 47.49 kcal Atomic # 6 Polarization: -62.19 SS G_CDS: 3.62 Total: -58.57 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.20 Total: -88.70 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -61.99 3.60 -58.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216099962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.180 kcal (2) G-P(sol) polarization free energy of solvation -61.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds