Wall clock time and date at job start Tue Mar 31 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46982 * 2 1 4 4 O 1.42905 * 109.47358 * 240.00683 * 2 1 3 5 5 C 1.42897 * 114.00374 * 89.99232 * 4 2 1 6 6 H 1.09001 * 109.46697 * 30.00475 * 5 4 2 7 7 C 1.50699 * 109.47351 * 270.00794 * 5 4 2 8 8 H 1.07994 * 120.00370 * 125.46908 * 7 5 4 9 9 C 1.37882 * 119.99508 * 305.46407 * 7 5 4 10 10 N 1.31515 * 120.00177 * 6.16350 * 9 7 5 11 11 Si 1.86808 * 119.99602 * 186.15881 * 9 7 5 12 12 H 1.48491 * 109.47093 * 60.00525 * 11 9 7 13 13 H 1.48504 * 109.46698 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47175 * 299.99896 * 11 9 7 15 15 C 1.50697 * 109.47025 * 150.00176 * 5 4 2 16 16 C 1.38238 * 119.99880 * 208.80610 * 15 5 4 17 17 C 1.38234 * 119.99674 * 179.81004 * 16 15 5 18 18 C 1.38238 * 119.99988 * 0.40411 * 17 16 15 19 19 C 1.38232 * 120.00218 * 359.85739 * 18 17 16 20 20 C 1.38231 * 120.00198 * 29.08809 * 15 5 4 21 21 C 1.50698 * 109.47682 * 120.00216 * 2 1 3 22 22 C 1.38237 * 119.99808 * 84.72329 * 21 2 1 23 23 C 1.38240 * 119.99698 * 180.34639 * 22 21 2 24 24 C 1.38229 * 119.99918 * 359.88738 * 23 22 21 25 25 C 1.38229 * 120.00210 * 0.09162 * 24 23 22 26 26 C 1.38231 * 120.00247 * 359.97299 * 25 24 23 27 27 H 1.09001 * 109.46779 * 299.99612 * 1 2 3 28 28 H 1.08996 * 109.47596 * 59.99460 * 1 2 3 29 29 H 1.08997 * 109.46625 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99474 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.00209 * 0.02562 * 16 15 5 32 32 H 1.08004 * 119.99843 * 180.23481 * 17 16 15 33 33 H 1.08002 * 119.99597 * 179.83317 * 18 17 16 34 34 H 1.07998 * 119.99772 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.99629 * 359.97438 * 20 15 5 36 36 H 1.07999 * 120.00245 * 0.27916 * 22 21 2 37 37 H 1.07998 * 119.99329 * 180.02562 * 23 22 21 38 38 H 1.08000 * 119.99677 * 180.10527 * 24 23 22 39 39 H 1.08008 * 120.00273 * 180.02562 * 25 24 23 40 40 H 1.08007 * 120.00074 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.2000 0.1831 -2.2941 6 1 2.4627 1.1833 -1.9495 7 6 0.9285 0.2474 -3.1005 8 1 0.4809 1.2036 -3.3275 9 6 0.3368 -0.9146 -3.5484 10 7 0.8115 -2.0818 -3.1718 11 14 -1.1395 -0.8309 -4.6901 12 1 -0.7615 -0.1174 -5.9363 13 1 -1.5861 -2.2075 -5.0233 14 1 -2.2445 -0.1017 -4.0177 15 6 3.3126 -0.3606 -3.1529 16 6 4.0830 0.4999 -3.9125 17 6 5.1061 0.0015 -4.6972 18 6 5.3534 -1.3582 -4.7288 19 6 4.5795 -2.2192 -3.9734 20 6 3.5590 -1.7204 -3.1856 21 6 2.0324 -0.7104 1.2304 22 6 2.1591 -2.0870 1.2304 23 6 2.6132 -2.7393 2.3614 24 6 2.9429 -2.0148 3.4916 25 6 2.8166 -0.6383 3.4914 26 6 2.3613 0.0139 2.3609 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 0.3949 -2.8993 -3.4867 31 1 3.8878 1.5619 -3.8902 32 1 5.7104 0.6742 -5.2878 33 1 6.1510 -1.7478 -5.3440 34 1 4.7725 -3.2815 -3.9985 35 1 2.9544 -2.3931 -2.5954 36 1 1.9022 -2.6529 0.3471 37 1 2.7125 -3.8147 2.3612 38 1 3.2993 -2.5243 4.3746 39 1 3.0746 -0.0722 4.3743 40 1 2.2630 1.0895 2.3607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223446759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:47 Heat of formation + Delta-G solvation = 4.997067 kcal Electronic energy + Delta-G solvation = -21981.855296 eV Core-core repulsion = 18919.420944 eV Total energy + Delta-G solvation = -3062.434352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.01402 -38.21931 -36.44689 -33.14615 -31.61920 -30.51471 -30.19789 -29.70408 -28.34014 -26.67369 -23.21893 -22.85317 -22.07021 -21.44675 -20.11504 -20.00281 -16.77435 -16.54119 -15.86071 -15.18223 -14.94612 -14.72829 -14.11813 -13.97746 -13.55799 -13.43229 -13.19130 -12.93944 -12.63635 -12.28962 -12.13590 -12.03171 -11.60536 -11.53281 -11.36662 -10.96106 -10.82743 -10.70355 -10.56909 -10.44865 -10.09987 -9.90512 -9.83069 -9.22485 -8.66836 -8.52261 -8.31719 -8.05196 -7.80765 -7.45200 -6.00171 -4.18230 1.75046 1.82592 2.43583 2.54836 3.27418 3.32574 3.35965 4.20280 4.37081 4.80117 4.97291 5.25020 5.27747 5.33557 5.44292 5.58615 5.77934 5.88621 5.91612 5.94497 6.03379 6.06554 6.23607 6.33434 6.37929 6.42225 6.51294 6.58605 6.73398 6.76646 6.82624 6.88092 7.00017 7.08921 7.13750 7.19880 7.28764 7.43723 7.47893 7.65994 7.81517 7.96363 8.09900 8.19620 8.58458 9.00884 9.52716 10.96773 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.006636 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.965977 B = 4218.688388 C = 5359.823914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.135 3.865 3 H 0.047 0.953 4 O -0.347 6.347 5 C 0.247 3.753 6 H 0.016 0.984 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.091 3.909 10 N -0.838 5.838 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C -0.033 4.033 16 C -0.130 4.130 17 C -0.141 4.141 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.068 4.068 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.129 4.129 26 C -0.121 4.121 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.260 0.740 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 0.906 7.454 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.076 3.924 3 H 0.065 0.935 4 O -0.266 6.266 5 C 0.191 3.809 6 H 0.034 0.966 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.116 4.116 10 N -0.472 5.472 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.033 4.033 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.169 4.169 19 C -0.163 4.163 20 C -0.080 4.080 21 C -0.069 4.069 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.147 4.147 26 C -0.139 4.139 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.108 0.495 7.429 8.504 hybrid contribution -0.936 0.227 -0.901 1.319 sum 3.172 0.722 6.528 7.294 Atomic orbital electron populations 1.22174 0.95694 1.02339 1.01004 1.20550 0.93611 0.93432 0.84817 0.93546 1.88052 1.85406 1.34960 1.18131 1.18595 0.91516 0.87057 0.83718 0.96594 1.21268 1.08317 0.92953 1.36097 0.92395 1.24869 0.96489 0.95441 0.94849 1.69957 1.39167 0.97077 1.41006 0.86865 0.83351 0.77209 0.81787 1.20269 1.21206 1.20239 1.20180 0.92586 0.93849 0.96722 1.20787 0.96310 0.98956 0.98788 1.20760 0.99208 0.95110 1.00893 1.20807 1.00762 0.93835 1.01451 1.21130 0.97581 0.98452 0.99154 1.21439 0.93663 0.95980 0.96887 1.20184 0.97285 0.94388 0.94996 1.21199 0.96825 0.94385 0.97965 1.21168 1.00241 0.99596 0.93589 1.21022 1.01668 0.94280 0.98196 1.20965 1.01214 0.94604 0.97958 1.20960 1.00274 0.99498 0.93218 0.94540 0.90447 0.92527 0.93022 0.87619 0.87877 0.88130 0.87915 0.83322 0.84699 0.86614 0.86923 0.86776 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.30 37.16 0.35 -2.67 16 2 C 0.13 2.67 2.93 -27.89 -0.08 2.59 16 3 H 0.05 0.89 7.28 -51.92 -0.38 0.51 16 4 O -0.35 -7.99 6.69 -35.23 -0.24 -8.23 16 5 C 0.25 5.88 2.56 -29.04 -0.07 5.81 16 6 H 0.02 0.37 7.32 -51.93 -0.38 -0.01 16 7 C -0.55 -14.02 7.35 -34.44 -0.25 -14.27 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.09 2.34 5.23 -17.82 -0.09 2.25 16 10 N -0.84 -21.77 9.48 55.43 0.53 -21.25 16 11 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C -0.03 -0.77 4.82 -104.63 -0.50 -1.27 16 16 C -0.13 -2.75 9.71 -39.58 -0.38 -3.14 16 17 C -0.14 -2.71 10.05 -39.58 -0.40 -3.10 16 18 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 19 C -0.14 -2.97 10.05 -39.59 -0.40 -3.37 16 20 C -0.06 -1.42 8.00 -39.59 -0.32 -1.74 16 21 C -0.07 -1.23 5.00 -104.62 -0.52 -1.75 16 22 C -0.09 -1.53 9.35 -39.58 -0.37 -1.90 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 24 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 25 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 26 C -0.12 -1.88 9.68 -39.59 -0.38 -2.26 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.64 6.82 -51.93 -0.35 1.29 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.15 3.70 5.99 -52.48 -0.31 3.39 16 36 H 0.14 2.65 7.63 -52.49 -0.40 2.25 16 37 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -26.79 333.15 -10.34 -37.13 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.60 Total: 6.74 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: -5.03 Total: -34.81 kcal Atomic # 7 Polarization: -21.77 SS G_CDS: 0.53 Total: -21.25 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.24 Total: -8.23 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.79 -10.34 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223446759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.129 kcal (2) G-P(sol) polarization free energy of solvation -26.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds